Rorug02G0085600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000442
Physical Location & Seq
Forward (+)
6845879 .. 6849701
3823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0085600.1

Sequence Viewer

Length: 369 bp
ATGATCTCTATTAGAACTTTGTCAAGAAATGAGGACCCACAATTGGAAGAAGATAAACTACTTGGCACAGGTATACCAGAAGGTCTAAATGTGGAATCTCCTCCTCAGTACAGAAATGCATATCAACCTATCCCAAGGCTTGGTTCGCTTTATCTTCGTTTTGGGCTAGCTGAAAATGCCTCCCACCACCTCTCATTTCCTGGACAAAGGCCAGAACAGTCTGAGTTGCAGAAGTTGAAGTCACTGGAGAAGCATCTGAAACAATGTTCAGATGCCCGTAAGCTTGGTGATTGGAAGAATGTGCTAAGGGAATCGGATGCAGCCATAGAAATGGGAGTGGAATCCTCCCCTCAGGTAGCAATGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.74

Weight (kDa)

5.92

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 140
AccI GTMKAC 1 cut(s) 73
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 43, 140
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 127, 159
AluBI AGCT 2 cut(s) 170, 283
AluI AGCT 2 cut(s) 170, 283
AoxI GGCC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 299
AsuNHI GCTAGC 1 cut(s) 166
AvaII GGWCC 1 cut(s) 34
AxyI CCTNAGG 1 cut(s) 351
BarI GAAGNNNNNNTAC 2 cut(s) 42, 74
BbvI GCAGC 1 cut(s) 332
BciT130I CCWGG 1 cut(s) 201
BfaI CTAG 1 cut(s) 167
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 3 cut(s) 262, 262, 307
BmtI GCTAGC 1 cut(s) 170
BpmI CTGGAG 1 cut(s) 266
Bpu10I CCTNAGC 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 134
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 140
Bse1I ACTGG 1 cut(s) 249
Bse21I CCTNAGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 366
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 2 cut(s) 43, 140
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 3 cut(s) 119, 213, 365
BseNI ACTGG 1 cut(s) 249
BseRI GAGGAG 2 cut(s) 90, 93
BseXI GCAGC 1 cut(s) 332
BshFI GGCC 1 cut(s) 211
BslI CCNNNNNNNGG 2 cut(s) 43, 140
BsnI GGCC 1 cut(s) 211
Bsp143I GATC 1 cut(s) 3
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 3 cut(s) 118, 214, 364
BspLI GGNNCC 1 cut(s) 36
BspOI GCTAGC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 1 cut(s) 3
BssNAI GTATAC 1 cut(s) 74
BssT1I CCWWGG 1 cut(s) 134
Bst1107I GTATAC 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 4 cut(s) 105, 222, 305, 351
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 2 cut(s) 145, 176
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 332
BstXI CCANNNNNNTGG 1 cut(s) 331
BstZ17I GTATAC 1 cut(s) 74
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 1 cut(s) 211
BtsCI GGATG 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 1 cut(s) 109
CviJI RGCY 6 cut(s) 139, 166, 170, 211, 283, 323
CviKI_1 RGCY 6 cut(s) 139, 166, 170, 211, 283, 323
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 4 cut(s) 105, 222, 305, 351
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 34
Eco81I CCTNAGG 1 cut(s) 351
EcoO109I RGGNCCY 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 134
EcoT22I ATGCAT 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 134
FaiI YATR 3 cut(s) 74, 121, 326
FblI GTMKAC 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 1 cut(s) 167
GluI GCNGC 1 cut(s) 321
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 3 cut(s) 95, 311, 341
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 4 cut(s) 223, 258, 271, 316
Hpy188III TCNNGA 1 cut(s) 24
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4V TGCA 4 cut(s) 119, 229, 320, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 176
HpyF3I CTNAG 4 cut(s) 105, 222, 305, 351
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 7 cut(s) 54, 90, 186, 213, 225, 230, 338
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 3 cut(s) 262, 262, 307
MaeI CTAG 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 240
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 4 cut(s) 59, 62, 146, 307
MfeI CAATTG 1 cut(s) 41
MluCI AATT 1 cut(s) 41
MnlI CCTC 7 cut(s) 25, 111, 114, 190, 200, 355, 360
Mph1103I ATGCAT 1 cut(s) 121
MslI CAYNNNNRTG 1 cut(s) 329
MspR9I CCNGG 1 cut(s) 201
MunI CAATTG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 145, 176
NdeII GATC 1 cut(s) 3
NheI GCTAGC 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 240
NsiI ATGCAT 1 cut(s) 121
PfeI GAWTC 3 cut(s) 95, 311, 341
PflMI CCANNNNNTGG 1 cut(s) 140
PfoI TCCNGGA 1 cut(s) 199
PkrI GCNGC 1 cut(s) 322
PpuMI RGGWCCY 1 cut(s) 34
Psp5II RGGWCCY 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 34
PspPPI RGGWCCY 1 cut(s) 34
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 329
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 201
SetI ASST 7 cut(s) 73, 85, 130, 172, 192, 285, 357
SfaNI GCATC 3 cut(s) 262, 262, 307
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 329
Sse9I AATT 1 cut(s) 41
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 199
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 219
TasI AATT 1 cut(s) 41
TatI WGTACW 1 cut(s) 108
TfiI GAWTC 3 cut(s) 95, 311, 341
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 1 cut(s) 240
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 240
TspRI CASTG 1 cut(s) 249
Van91I CCANNNNNTGG 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 73
XspI CTAG 1 cut(s) 167
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.