Rw2G052330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000442
Physical Location & Seq
Forward (+)
80297608 .. 80299142
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G052330.1

Sequence Viewer

Length: 975 bp
ATGGGATTTCTAGTTGGCATTTTGAGGAAATTGGGCAGCAGCTCCATTGTCAGTAACATGGGGCCAAAGTTGAATTTGGGCACAAAGATGCATTGCTCATTTGGGACTCTGACAATGGAAGATATTAAGCAAGATGGCACATTGGAGCAAAAAAGAGCTTGCTTGAAAGGGCTACTTCATGAAATGGTATGGAGAATGAGGAGGGGCATTCAAGGAGGATGCACAGACCTAGAACAGATTCCTGTAATTTATGACGGAGCTTACTTGCCAGACGAGACATATGTAGTAGGGAAATACCCTAGCTACTTATTTTCAGTAAAAGATCTGGCAGTTCATCTTCATGAGAATGATCAAATGAGTTCAAGGGACAGCATGAAGTTTGAAGATTTCAAGATTTACACGAGCTTATTGAGCAACATAAGACATCTTGTACTGTTAGCTAGGCATCCTCATCTACAAACAACAGTGCAAGAGATAGCATACATACCAGCAACATTTCACCAAATGGATTTGATTCCTGCCAAACCGAATGCCCTATACCCATACCGGCACTTCCCACTTCCCCACCCCAATTGCCATCAAGTTCCAAGAGCATTGGCATTTACATCTCCAGAGAAACATCTACACCAGTGGCAGGATGCTTATAGGAGAGTGTGTGTCAATAGGAGGGTCCACATTGCACGGTCAATTGCAAGTGCTGGCATAGAGTTTCATGAAGTGTACAACTACCGTAGCTCATTCAAGACAACAGGATACAACGATCGTGATCCCATAGATGAGTTAAGATATTATAGCAATGTGATCAAGCACCACAAGAACCTAGATAAGGCAGTTGACTCCTTGTATGACATGTTTCCATCCAACACCACGGAGATGTTCAAATTTCATTGGTGCTATGATATGCATGCTATGGGGGCAATTAACCTCGAACACATCCAGCAGCAGGTAATAATACAATTTCCTTTACCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

37.58

Weight (kDa)

8.42

Isoelectric Point (pI)

50.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 934
AclWI GGATC 1 cut(s) 761
AcsI RAATTY 2 cut(s) 73, 881
AfaI GTAC 2 cut(s) 432, 722
AfiI CCNNNNNNNGG 3 cut(s) 634, 826, 943
AflIII ACRYGT 1 cut(s) 849
AgsI TTSAA 8 cut(s) 73, 166, 212, 363, 383, 391, 742, 880
AluBI AGCT 7 cut(s) 42, 158, 260, 303, 405, 440, 735
AluI AGCT 7 cut(s) 42, 158, 260, 303, 405, 440, 735
Alw26I GTCTC 1 cut(s) 269
AlwI GGATC 1 cut(s) 761
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 3 cut(s) 36, 39, 940
ApoI RAATTY 2 cut(s) 73, 881
Asp700I GAANNNNTTC 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 62, 670
AsuHPI GGTGA 1 cut(s) 491
AvaII GGWCC 1 cut(s) 670
BaeGI GKGCMC 1 cut(s) 83
BauI CACGAG 1 cut(s) 400
BbvI GCAGC 3 cut(s) 48, 51, 952
BccI CCATC 3 cut(s) 128, 585, 865
BciVI GTATCC 1 cut(s) 746
BclI TGATCA 2 cut(s) 349, 801
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 5 cut(s) 11, 230, 300, 441, 821
BfuAI ACCTGC 1 cut(s) 934
BfuI GTATCC 1 cut(s) 746
BglII AGATCT 1 cut(s) 322
BisI GCNGC 3 cut(s) 37, 40, 941
BlsI GCNGC 3 cut(s) 38, 41, 942
Bme18I GGWCC 1 cut(s) 670
BmgT120I GGNCC 2 cut(s) 62, 670
BmiI GGNNCC 2 cut(s) 63, 671
BmsI GCATC 4 cut(s) 78, 209, 454, 628
BpmI CTGGAG 1 cut(s) 594
BsaBI GATNNNNATC 1 cut(s) 765
BsaJI CCNNGG 1 cut(s) 867
BsaXI ACNNNNNCTCC 2 cut(s) 640, 670
Bsc4I CCNNNNNNNGG 3 cut(s) 634, 826, 943
Bse118I RCCGGY 1 cut(s) 546
Bse1I ACTGG 1 cut(s) 628
Bse3DI GCAATG 3 cut(s) 91, 675, 802
Bse8I GATNNNNATC 1 cut(s) 765
BseDI CCNNGG 1 cut(s) 867
BseGI GGATG 5 cut(s) 224, 445, 643, 857, 933
BseJI GATNNNNATC 1 cut(s) 765
BseLI CCNNNNNNNGG 3 cut(s) 634, 826, 943
BseMI GCAATG 3 cut(s) 91, 675, 802
BseNI ACTGG 1 cut(s) 628
BseRI GAGGAG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 3 cut(s) 48, 51, 952
Bsh1285I CGRYCG 1 cut(s) 763
BshFI GGCC 1 cut(s) 64
BsiEI CGRYCG 1 cut(s) 763
BsiSI CCGG 1 cut(s) 547
BslFI GGGAC 2 cut(s) 118, 380
BslI CCNNNNNNNGG 3 cut(s) 634, 826, 943
BsmAI GTCTC 1 cut(s) 269
BsmFI GGGAC 2 cut(s) 118, 380
BsmI GAATGC 2 cut(s) 207, 535
BsnI GGCC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 83
Bsp1407I TGTACA 1 cut(s) 720
Bsp143I GATC 5 cut(s) 322, 349, 760, 766, 801
BspANI GGCC 1 cut(s) 64
BspHI TCATGA 3 cut(s) 178, 340, 712
BspLI GGNNCC 2 cut(s) 63, 671
BspMI ACCTGC 1 cut(s) 934
BspPI GGATC 1 cut(s) 761
BsrDI GCAATG 3 cut(s) 91, 675, 802
BsrFI RCCGGY 1 cut(s) 546
BsrGI TGTACA 1 cut(s) 720
BsrI ACTGG 1 cut(s) 628
BssAI RCCGGY 1 cut(s) 546
BssECI CCNNGG 1 cut(s) 867
BssMI GATC 5 cut(s) 322, 349, 760, 766, 801
BssSI CACGAG 1 cut(s) 400
Bst2BI CACGAG 1 cut(s) 400
Bst4CI ACNGT 4 cut(s) 435, 466, 684, 731
BstAUI TGTACA 1 cut(s) 720
BstC8I GCNNGC 3 cut(s) 160, 700, 906
BstDSI CCRYGG 1 cut(s) 867
BstENI CCTNNNNNAGG 1 cut(s) 824
BstF5I GGATG 5 cut(s) 224, 445, 643, 857, 933
BstKTI GATC 5 cut(s) 325, 352, 763, 769, 804
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 5 cut(s) 322, 349, 760, 766, 801
BstMCI CGRYCG 1 cut(s) 763
BstMWI GCNNNNNNNGC 2 cut(s) 411, 914
BstNSI RCATGY 2 cut(s) 853, 908
BstSLI GKGCMC 1 cut(s) 83
BstV1I GCAGC 3 cut(s) 48, 51, 952
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuI GTATCC 1 cut(s) 746
BsuRI GGCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 867
BtsCI GGATG 5 cut(s) 224, 445, 643, 857, 933
BtsIMutI CAGTG 2 cut(s) 471, 635
BveI ACCTGC 1 cut(s) 934
Cac8I GCNNGC 3 cut(s) 160, 700, 906
CciI TCATGA 3 cut(s) 178, 340, 712
Cfr10I RCCGGY 1 cut(s) 546
Cfr13I GGNCC 2 cut(s) 62, 670
Csp6I GTAC 2 cut(s) 431, 721
CspCI CAANNNNNGTGG 2 cut(s) 554, 589
CviAII CATG 7 cut(s) 58, 179, 341, 373, 713, 850, 905
CviJI RGCY 9 cut(s) 42, 64, 158, 172, 260, 303, 405, 440, 735
CviKI_1 RGCY 9 cut(s) 42, 64, 158, 172, 260, 303, 405, 440, 735
CviQI GTAC 2 cut(s) 431, 721
DpnI GATC 5 cut(s) 324, 351, 762, 768, 803
DpnII GATC 5 cut(s) 322, 349, 760, 766, 801
Eco47I GGWCC 1 cut(s) 670
EcoNI CCTNNNNNAGG 1 cut(s) 824
EcoT22I ATGCAT 2 cut(s) 93, 906
FaeI CATG 7 cut(s) 61, 182, 344, 376, 716, 853, 908
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FaqI GGGAC 2 cut(s) 118, 380
FatI CATG 7 cut(s) 57, 178, 340, 372, 712, 849, 904
FauNDI CATATG 1 cut(s) 280
FbaI TGATCA 2 cut(s) 349, 801
Fnu4HI GCNGC 3 cut(s) 37, 40, 941
FokI GGATG 5 cut(s) 231, 432, 650, 844, 920
Fsp4HI GCNGC 3 cut(s) 37, 40, 941
FspBI CTAG 5 cut(s) 11, 230, 300, 441, 821
GluI GCNGC 3 cut(s) 37, 40, 941
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 1 cut(s) 64
HapII CCGG 1 cut(s) 547
Hin1II CATG 7 cut(s) 61, 182, 344, 376, 716, 853, 908
HincII GTYRAC 1 cut(s) 835
HindII GTYRAC 1 cut(s) 835
HinfI GANTC 4 cut(s) 106, 238, 514, 836
HpaII CCGG 1 cut(s) 547
HphI GGTGA 1 cut(s) 491
Hpy166II GTNNAC 3 cut(s) 673, 721, 835
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 7 cut(s) 179, 341, 391, 611, 713, 742, 764
Hpy8I GTNNAC 3 cut(s) 673, 721, 835
HpyCH4III ACNGT 4 cut(s) 435, 466, 684, 731
HpyCH4V TGCA 6 cut(s) 91, 222, 469, 680, 692, 904
HpyF10VI GCNNNNNNNGC 2 cut(s) 411, 914
Hsp92II CATG 7 cut(s) 61, 182, 344, 376, 716, 853, 908
Ksp22I TGATCA 2 cut(s) 349, 801
Kzo9I GATC 5 cut(s) 322, 349, 760, 766, 801
LmnI GCTCC 3 cut(s) 47, 145, 257
Lsp1109I GCAGC 3 cut(s) 48, 51, 952
LweI GCATC 4 cut(s) 78, 209, 454, 628
MaeI CTAG 5 cut(s) 11, 230, 300, 441, 821
MaeIII GTNAC 1 cut(s) 53
MalI GATC 5 cut(s) 324, 351, 762, 768, 803
MboI GATC 5 cut(s) 322, 349, 760, 766, 801
MboII GAAGA 3 cut(s) 131, 329, 395
MfeI CAATTG 2 cut(s) 571, 687
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 8 cut(s) 29, 73, 246, 571, 687, 881, 918, 956
MlyI GAGTC 2 cut(s) 100, 830
MmeI TCCRAC 1 cut(s) 885
MnlI CCTC 7 cut(s) 18, 192, 195, 209, 459, 660, 935
Mph1103I ATGCAT 2 cut(s) 93, 906
MroXI GAANNNNTTC 1 cut(s) 237
MseI TTAA 3 cut(s) 126, 782, 921
MslI CAYNNNNRTG 4 cut(s) 86, 339, 345, 872
MspI CCGG 1 cut(s) 547
MunI CAATTG 2 cut(s) 571, 687
Mva1269I GAATGC 2 cut(s) 207, 535
MwoI GCNNNNNNNGC 2 cut(s) 411, 914
NdeI CATATG 1 cut(s) 280
NdeII GATC 5 cut(s) 322, 349, 760, 766, 801
NlaIII CATG 7 cut(s) 61, 182, 344, 376, 716, 853, 908
NlaIV GGNNCC 2 cut(s) 63, 671
NsiI ATGCAT 2 cut(s) 93, 906
NspI RCATGY 2 cut(s) 853, 908
PaeI GCATGC 1 cut(s) 908
PagI TCATGA 3 cut(s) 178, 340, 712
PciI ACATGT 1 cut(s) 849
PctI GAATGC 2 cut(s) 207, 535
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 2 cut(s) 238, 514
PkrI GCNGC 3 cut(s) 38, 41, 942
Ple19I CGATCG 1 cut(s) 763
PleI GAGTC 2 cut(s) 100, 830
PpsI GAGTC 2 cut(s) 100, 830
PscI ACATGT 1 cut(s) 849
PspN4I GGNNCC 2 cut(s) 63, 671
PspPI GGNCC 2 cut(s) 62, 670
PsuI RGATCY 1 cut(s) 322
PvuI CGATCG 1 cut(s) 763
RsaI GTAC 2 cut(s) 432, 722
RsaNI GTAC 2 cut(s) 431, 721
RseI CAYNNNNRTG 4 cut(s) 86, 339, 345, 872
SaqAI TTAA 3 cut(s) 126, 782, 921
SatI GCNGC 3 cut(s) 37, 40, 941
Sau3AI GATC 5 cut(s) 322, 349, 760, 766, 801
Sau96I GGNCC 2 cut(s) 62, 670
SchI GAGTC 2 cut(s) 100, 830
SduI GDGCHC 1 cut(s) 83
SfaNI GCATC 4 cut(s) 78, 209, 454, 628
SinI GGWCC 1 cut(s) 670
SmiMI CAYNNNNRTG 4 cut(s) 86, 339, 345, 872
SphI GCATGC 1 cut(s) 908
Sse9I AATT 8 cut(s) 29, 73, 246, 571, 687, 881, 918, 956
SspMI CTAG 5 cut(s) 11, 230, 300, 441, 821
TaaI ACNGT 4 cut(s) 435, 466, 684, 731
TaqI TCGA 1 cut(s) 927
TasI AATT 8 cut(s) 29, 73, 246, 571, 687, 881, 918, 956
TatI WGTACW 2 cut(s) 430, 720
TfiI GAWTC 2 cut(s) 238, 514
Tru1I TTAA 3 cut(s) 126, 782, 921
Tru9I TTAA 3 cut(s) 126, 782, 921
TscAI CASTG 2 cut(s) 471, 635
TseI GCWGC 3 cut(s) 36, 39, 940
TspDTI ATGAA 8 cut(s) 167, 195, 323, 329, 389, 701, 729, 875
TspGWI ACGGA 2 cut(s) 270, 884
TspRI CASTG 2 cut(s) 471, 635
VpaK11BI GGWCC 1 cut(s) 670
XagI CCTNNNNNAGG 1 cut(s) 824
XapI RAATTY 2 cut(s) 73, 881
XceI RCATGY 2 cut(s) 853, 908
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 5 cut(s) 11, 230, 300, 441, 821
Zsp2I ATGCAT 2 cut(s) 93, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.