RLG00000017141

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000442
Physical Location & Seq
Reverse (-)
13330542 .. 13331254
713 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017141

Sequence Viewer

Length: 609 bp
ATGACTCCGACTCTCGAGAGAGAGAAATATCGCCGGTCTCTTTCTTGGGAAAGCGGCGGCGACAAACCTACTCATCTGCTTCTCTCTTCGGGTTGCGACGGCGACAAATCTCTTCGCCAGACTCTATCTTCAGTTAGAGGCTGTGTGTTTGTTGTATTTGATGGTAATTGGGTTCTAGTTAACCGGATCTGGTGTGGTGGAAGATTTCCAATGGGTAGTGATGTAGATCTGACCAACTGTGTTGGAGGTTGGCATGCGCAGCGCGGTGGGCTGATTCCCATCTCCATTGGCGGTGATGATTGCGGCGGATTCTGTTCTGACGGCGGCAATTTGGTTTGGGTTACCAATGGCGTGCGCTGGGGTCGTGATTTTGGGATGGTCGAAGATGGCAGAGTCCATCCATTGTCATGGTTTGGAAGAAAGCTTCTCTCTCCACGATCAAGCTGGGTGGCGTGCGTCGGTGTCCGAATTGGTAGGGAAGACAGCGTTGACCCGTCTGTGTTGGGCAGCAGTGAAGTCGGCGGCGGCGGCGGGGTGTTTCCCTCGACTGGTGTCTGCAACGGTGCAGCTATTGGTGGCTGGTCGGAAGGACATTTGTGGGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

21.52

Weight (kDa)

6.5

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 258
AccII CGCG 1 cut(s) 264
AclWI GGATC 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 548
AluBI AGCT 3 cut(s) 424, 444, 569
AluI AGCT 3 cut(s) 424, 444, 569
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 194
Ama87I CYCGRG 1 cut(s) 14
ApeKI GCWGC 3 cut(s) 259, 507, 566
AspLEI GCGC 3 cut(s) 259, 264, 357
AsuHPI GGTGA 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 14
BanII GRGCYC 1 cut(s) 604
BbsI GAAGAC 1 cut(s) 486
BbvI GCAGC 3 cut(s) 271, 519, 578
BccI CCATC 5 cut(s) 155, 287, 370, 380, 405
BceAI ACGGC 2 cut(s) 115, 337
BcgI CGANNNNNNTGC 2 cut(s) 499, 533
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 176
BglII AGATCT 1 cut(s) 226
BmeT110I CYCGRG 1 cut(s) 14
BoxI GACNNNNGTC 1 cut(s) 551
BpiI GAAGAC 1 cut(s) 486
BsaBI GATNNNNATC 2 cut(s) 225, 278
BsaI GGTCTC 1 cut(s) 42
BsaWI WCCGGW 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 548
Bse118I RCCGGY 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 553
Bse8I GATNNNNATC 2 cut(s) 225, 278
BseGI GGATG 2 cut(s) 381, 397
BseJI GATNNNNATC 2 cut(s) 225, 278
BseLI CCNNNNNNNGG 1 cut(s) 548
BseNI ACTGG 1 cut(s) 553
BseXI GCAGC 3 cut(s) 271, 519, 578
BseYI CCCAGC 2 cut(s) 357, 444
BsgI GTGCAG 1 cut(s) 585
Bsh1236I CGCG 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 2 cut(s) 34, 184
BslI CCNNNNNNNGG 1 cut(s) 548
BsmAI GTCTC 1 cut(s) 42
Bso31I GGTCTC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 604
Bsp143I GATC 3 cut(s) 186, 226, 437
BspFNI CGCG 1 cut(s) 264
BspPI GGATC 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 33
BsrI ACTGG 1 cut(s) 553
BssAI RCCGGY 1 cut(s) 33
BssMI GATC 3 cut(s) 186, 226, 437
Bst4CI ACNGT 2 cut(s) 239, 563
Bst6I CTCTTC 2 cut(s) 91, 117
BstC8I GCNNGC 3 cut(s) 255, 353, 454
BstEII GGTNACC 1 cut(s) 340
BstF5I GGATG 2 cut(s) 381, 397
BstFNI CGCG 1 cut(s) 264
BstHHI GCGC 3 cut(s) 259, 264, 357
BstKTI GATC 3 cut(s) 189, 229, 440
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 3 cut(s) 186, 226, 437
BstMWI GCNNNNNNNGC 3 cut(s) 259, 268, 528
BstNSI RCATGY 1 cut(s) 257
BstPAI GACNNNNGTC 1 cut(s) 551
BstPI GGTNACC 1 cut(s) 340
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 3 cut(s) 271, 519, 578
BstV2I GAAGAC 1 cut(s) 486
BstX2I RGATCY 2 cut(s) 186, 226
BstXI CCANNNNNNTGG 1 cut(s) 408
BstYI RGATCY 2 cut(s) 186, 226
BtsCI GGATG 2 cut(s) 381, 397
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 3 cut(s) 255, 353, 454
CfoI GCGC 3 cut(s) 259, 264, 357
Cfr10I RCCGGY 1 cut(s) 33
CseI GACGC 1 cut(s) 445
CspCI CAANNNNNGTGG 2 cut(s) 429, 464
CviAII CATG 2 cut(s) 254, 408
CviJI RGCY 7 cut(s) 141, 271, 424, 444, 569, 579, 602
CviKI_1 RGCY 7 cut(s) 141, 271, 424, 444, 569, 579, 602
DpnI GATC 3 cut(s) 188, 228, 439
DpnII GATC 3 cut(s) 186, 226, 437
Eam1104I CTCTTC 2 cut(s) 91, 117
EarI CTCTTC 2 cut(s) 91, 117
EciI GGCGGA 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 604
Eco31I GGTCTC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 14
Eco91I GGTNACC 1 cut(s) 340
EcoO65I GGTNACC 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 604
FaeI CATG 2 cut(s) 257, 411
FaiI YATR 2 cut(s) 255, 409
FatI CATG 2 cut(s) 253, 407
FauI CCCGC 1 cut(s) 524
FokI GGATG 2 cut(s) 384, 388
FriOI GRGCYC 1 cut(s) 604
FspBI CTAG 1 cut(s) 176
FspI TGCGCA 1 cut(s) 258
GlaI GCGC 3 cut(s) 258, 263, 356
GsaI CCCAGC 2 cut(s) 361, 448
HapII CCGG 2 cut(s) 34, 184
HgaI GACGC 1 cut(s) 445
HhaI GCGC 3 cut(s) 259, 264, 357
Hin1II CATG 2 cut(s) 257, 411
Hin6I GCGC 3 cut(s) 257, 262, 355
HinP1I GCGC 3 cut(s) 257, 262, 355
HincII GTYRAC 2 cut(s) 181, 490
HindII GTYRAC 2 cut(s) 181, 490
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 6 cut(s) 4, 10, 121, 274, 309, 393
HpaI GTTAAC 1 cut(s) 181
HpaII CCGG 2 cut(s) 34, 184
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 2 cut(s) 181, 490
Hpy188I TCNGA 5 cut(s) 9, 231, 319, 467, 586
Hpy188III TCNNGA 3 cut(s) 14, 16, 365
Hpy8I GTNNAC 2 cut(s) 181, 490
Hpy99I CGWCG 2 cut(s) 101, 461
HpyAV CCTTC 1 cut(s) 581
HpyCH4III ACNGT 2 cut(s) 239, 563
HpyCH4V TGCA 2 cut(s) 558, 566
HpyF10VI GCNNNNNNNGC 3 cut(s) 259, 268, 528
Hsp92II CATG 2 cut(s) 257, 411
HspAI GCGC 3 cut(s) 257, 262, 355
KspAI GTTAAC 1 cut(s) 181
Kzo9I GATC 3 cut(s) 186, 226, 437
LpnPI CCDG 8 cut(s) 47, 131, 175, 197, 343, 430, 534, 565
Lsp1109I GCAGC 3 cut(s) 271, 519, 578
MaeI CTAG 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 340
MalI GATC 3 cut(s) 188, 228, 439
MboI GATC 3 cut(s) 186, 226, 437
MboII GAAGA 7 cut(s) 78, 104, 120, 213, 395, 429, 491
MflI RGATCY 2 cut(s) 186, 226
MhlI GDGCHC 1 cut(s) 604
MluCI AATT 3 cut(s) 166, 328, 468
MlyI GAGTC 3 cut(s) 4, 115, 402
MmeI TCCRAC 3 cut(s) 32, 223, 564
MnlI CCTC 3 cut(s) 131, 239, 553
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 406
MspI CCGG 2 cut(s) 34, 184
MteI GCGCNGCGC 1 cut(s) 260
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 259, 268, 528
NdeII GATC 3 cut(s) 186, 226, 437
NlaIII CATG 2 cut(s) 257, 411
NsbI TGCGCA 1 cut(s) 258
NspI RCATGY 1 cut(s) 257
PaeI GCATGC 1 cut(s) 257
PaeR7I CTCGAG 1 cut(s) 14
PfeI GAWTC 2 cut(s) 274, 309
PleI GAGTC 3 cut(s) 4, 115, 401
PpsI GAGTC 3 cut(s) 4, 115, 401
PshAI GACNNNNGTC 1 cut(s) 551
PspEI GGTNACC 1 cut(s) 340
PspFI CCCAGC 2 cut(s) 357, 444
PsuI RGATCY 2 cut(s) 186, 226
RseI CAYNNNNRTG 1 cut(s) 406
SaqAI TTAA 1 cut(s) 180
Sau3AI GATC 3 cut(s) 186, 226, 437
SchI GAGTC 3 cut(s) 4, 115, 402
SduI GDGCHC 1 cut(s) 604
SetI ASST 5 cut(s) 70, 250, 426, 446, 571
Sfr274I CTCGAG 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 406
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
SphI GCATGC 1 cut(s) 257
Sse9I AATT 3 cut(s) 166, 328, 468
SspMI CTAG 1 cut(s) 176
TaaI ACNGT 2 cut(s) 239, 563
TaqI TCGA 3 cut(s) 15, 381, 545
TasI AATT 3 cut(s) 166, 328, 468
TauI GCSGC 7 cut(s) 57, 60, 306, 327, 525, 528, 531
TfiI GAWTC 2 cut(s) 274, 309
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 517
TseI GCWGC 3 cut(s) 259, 507, 566
TspRI CASTG 1 cut(s) 517
XceI RCATGY 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 441
XhoI CTCGAG 1 cut(s) 14
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.