RLG00000009488

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000442
Physical Location & Seq
Reverse (-)
53492561 .. 53495080
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009488

Sequence Viewer

Length: 519 bp
ATGGAATGGAACAGTGATGTCGATCCGACGAACTGTGCTGGTGGTTGGCATGCGCAGAGTGGTGGGCTGATTCACATATCTGCTGGCGGTGATGTTTGCGGCGGCTTCTATGCCGACGGCGGCAATTTGGTTTGGGCTACCGACGGCGTGGTGCGATGTCCAGATGTCTTTGCTGGATCGCGATCGGCTTTAGGTAGGGGATGTGACTGGATCTGGTTTTGTGGAGACGCAAAGGATCCTGATCTTAGTGGTGGAGCTGGGGTCGCGATTTTGGGATGGTCGAAGATGACAGCTAGGGATTGGGATGAGGAAGGCTTCGTTTCTCTTGCAGATACGGTGATGGCTTGTCCTGCTAGATGGCAACTGGCAGAGTCCGTCCATTATCATGGTTCGGTGGGGAAGCTTCTCTCTCTACGATCATGGACCCGTCTGTGTTGGGCAGTAATGAAGTCGGCAGAGGCTATAGGGTGTTTTCCTCGACTGGCGTTTGCGATGGCGCAACTAGTGGTTGTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

18.26

Weight (kDa)

5.01

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 54
AccII CGCG 2 cut(s) 181, 266
AciI CCGC 4 cut(s) 87, 99, 102, 120
AclWI GGATC 5 cut(s) 17, 184, 218, 230, 243
AhlI ACTAGT 1 cut(s) 502
AluBI AGCT 3 cut(s) 257, 293, 403
AluI AGCT 3 cut(s) 257, 293, 403
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 5 cut(s) 17, 184, 218, 230, 243
AspLEI GCGC 2 cut(s) 55, 499
AspS9I GGNCC 1 cut(s) 423
AsuHPI GGTGA 2 cut(s) 101, 349
AvaII GGWCC 1 cut(s) 423
BamHI GGATCC 1 cut(s) 235
BccI CCATC 4 cut(s) 270, 334, 351, 487
BceAI ACGGC 2 cut(s) 133, 160
BcoDI GTCTC 1 cut(s) 219
BcuI ACTAGT 1 cut(s) 502
BfaI CTAG 3 cut(s) 294, 354, 503
BfmI CTRYAG 1 cut(s) 462
BisI GCNGC 3 cut(s) 100, 103, 121
BlsI GCNGC 3 cut(s) 101, 104, 122
Bme18I GGWCC 1 cut(s) 423
BmgT120I GGNCC 1 cut(s) 423
BmiI GGNNCC 2 cut(s) 237, 425
BsaBI GATNNNNATC 3 cut(s) 21, 181, 240
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bse1I ACTGG 3 cut(s) 212, 369, 486
Bse8I GATNNNNATC 3 cut(s) 21, 181, 240
BseGI GGATG 3 cut(s) 206, 281, 310
BseJI GATNNNNATC 3 cut(s) 21, 181, 240
BseNI ACTGG 3 cut(s) 212, 369, 486
BseYI CCCAGC 1 cut(s) 257
Bsh1236I CGCG 2 cut(s) 181, 266
Bsh1285I CGRYCG 1 cut(s) 185
BsiEI CGRYCG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 219
BsmBI CGTCTC 1 cut(s) 219
Bsp143I GATC 7 cut(s) 22, 176, 182, 210, 235, 241, 416
Bsp68I TCGCGA 2 cut(s) 181, 266
BspACI CCGC 4 cut(s) 87, 99, 102, 120
BspFNI CGCG 2 cut(s) 181, 266
BspLI GGNNCC 2 cut(s) 237, 425
BspPI GGATC 5 cut(s) 17, 184, 218, 230, 243
BsrI ACTGG 3 cut(s) 212, 369, 486
BssMI GATC 7 cut(s) 22, 176, 182, 210, 235, 241, 416
Bst4CI ACNGT 3 cut(s) 14, 35, 337
BstC8I GCNNGC 2 cut(s) 51, 85
BstDEI CTNAG 1 cut(s) 245
BstF5I GGATG 3 cut(s) 206, 281, 310
BstFNI CGCG 2 cut(s) 181, 266
BstHHI GCGC 2 cut(s) 55, 499
BstKTI GATC 7 cut(s) 25, 179, 185, 213, 238, 244, 419
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 7 cut(s) 22, 176, 182, 210, 235, 241, 416
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 2 cut(s) 263, 350
BstNSI RCATGY 1 cut(s) 53
BstSFI CTRYAG 1 cut(s) 462
BstUI CGCG 2 cut(s) 181, 266
BstX2I RGATCY 2 cut(s) 210, 235
BstXI CCANNNNNNTGG 1 cut(s) 386
BstYI RGATCY 2 cut(s) 210, 235
BtgZI GCGATG 2 cut(s) 169, 506
BtsCI GGATG 3 cut(s) 206, 281, 310
BtsIMutI CAGTG 1 cut(s) 19
BtuMI TCGCGA 2 cut(s) 181, 266
Cac8I GCNNGC 2 cut(s) 51, 85
CfoI GCGC 2 cut(s) 55, 499
Cfr13I GGNCC 1 cut(s) 423
CseI GACGC 1 cut(s) 236
CviAII CATG 3 cut(s) 50, 386, 420
DdeI CTNAG 1 cut(s) 245
DpnI GATC 7 cut(s) 24, 178, 184, 212, 237, 243, 418
DpnII GATC 7 cut(s) 22, 176, 182, 210, 235, 241, 416
Eco47I GGWCC 1 cut(s) 423
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 3 cut(s) 53, 389, 423
FaiI YATR 6 cut(s) 51, 77, 111, 387, 421, 464
FatI CATG 3 cut(s) 49, 385, 419
Fnu4HI GCNGC 3 cut(s) 100, 103, 121
FokI GGATG 3 cut(s) 213, 288, 317
Fsp4HI GCNGC 3 cut(s) 100, 103, 121
FspBI CTAG 3 cut(s) 294, 354, 503
FspI TGCGCA 1 cut(s) 54
GlaI GCGC 2 cut(s) 54, 498
GluI GCNGC 3 cut(s) 100, 103, 121
GsaI CCCAGC 1 cut(s) 261
HgaI GACGC 1 cut(s) 236
HhaI GCGC 2 cut(s) 55, 499
Hin1II CATG 3 cut(s) 53, 389, 423
Hin6I GCGC 2 cut(s) 53, 497
HinP1I GCGC 2 cut(s) 53, 497
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 2 cut(s) 70, 371
HphI GGTGA 2 cut(s) 101, 349
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 4 cut(s) 161, 180, 239, 265
Hpy99I CGWCG 3 cut(s) 31, 119, 146
HpyAV CCTTC 1 cut(s) 305
HpyCH4III ACNGT 3 cut(s) 14, 35, 337
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 350
HpyF3I CTNAG 1 cut(s) 245
Hsp92II CATG 3 cut(s) 53, 389, 423
HspAI GCGC 2 cut(s) 53, 497
Kzo9I GATC 7 cut(s) 22, 176, 182, 210, 235, 241, 416
LmnI GCTCC 1 cut(s) 254
MaeI CTAG 3 cut(s) 294, 354, 503
MaeIII GTNAC 1 cut(s) 203
MalI GATC 7 cut(s) 24, 178, 184, 212, 237, 243, 418
MboI GATC 7 cut(s) 22, 176, 182, 210, 235, 241, 416
MboII GAAGA 1 cut(s) 295
MflI RGATCY 2 cut(s) 210, 235
MluCI AATT 1 cut(s) 124
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 50
MnlI CCTC 3 cut(s) 301, 451, 486
MslI CAYNNNNRTG 1 cut(s) 384
MvnI CGCG 2 cut(s) 181, 266
MwoI GCNNNNNNNGC 2 cut(s) 263, 350
NdeII GATC 7 cut(s) 22, 176, 182, 210, 235, 241, 416
NlaIII CATG 3 cut(s) 53, 389, 423
NlaIV GGNNCC 2 cut(s) 237, 425
NmuCI GTSAC 1 cut(s) 203
NruI TCGCGA 2 cut(s) 181, 266
NsbI TGCGCA 1 cut(s) 54
NspI RCATGY 1 cut(s) 53
PaeI GCATGC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 3 cut(s) 101, 104, 122
Ple19I CGATCG 1 cut(s) 185
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
PspFI CCCAGC 1 cut(s) 257
PspN4I GGNNCC 2 cut(s) 237, 425
PspPI GGNCC 1 cut(s) 423
PsuI RGATCY 2 cut(s) 210, 235
PvuI CGATCG 1 cut(s) 185
RruI TCGCGA 2 cut(s) 181, 266
RseI CAYNNNNRTG 1 cut(s) 384
SatI GCNGC 3 cut(s) 100, 103, 121
Sau3AI GATC 7 cut(s) 22, 176, 182, 210, 235, 241, 416
Sau96I GGNCC 1 cut(s) 423
SchI GAGTC 1 cut(s) 380
SetI ASST 4 cut(s) 196, 259, 295, 405
SfcI CTRYAG 1 cut(s) 462
SinI GGWCC 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 384
SpeI ACTAGT 1 cut(s) 502
SphI GCATGC 1 cut(s) 53
Sse9I AATT 1 cut(s) 124
SsiI CCGC 4 cut(s) 87, 99, 102, 120
SspMI CTAG 3 cut(s) 294, 354, 503
TaaI ACNGT 3 cut(s) 14, 35, 337
TaqI TCGA 3 cut(s) 21, 281, 478
TasI AATT 1 cut(s) 124
TauI GCSGC 3 cut(s) 102, 105, 123
TfiI GAWTC 1 cut(s) 70
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 461
TspGWI ACGGA 1 cut(s) 364
TspRI CASTG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 423
XceI RCATGY 1 cut(s) 53
XspI CTAG 3 cut(s) 294, 354, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.