RLG00000022073

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000442
Physical Location & Seq
Forward (+)
80659830 .. 80660478
649 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022073

Sequence Viewer

Length: 498 bp
ATGCTCATTCTATCATCTTCTACTAGAGGAGGGTGTCCTTTAGAACTGTGCTTATTCTCTCGTTCTAGTGTTTTGAATCTGATCAGGATTGTATTTGGATTCGGCGCAGGCATGGCCACCCTACCATTTCCCAAGTTGTACCTTGAAGAGGTGAAGCTAGAGGCAGAACTGGACATTAAGAAGGCTTGGGTCAGAGAAGTACTTCAAGGGATTATGTGGAGAATGTCCAAGGGCATCAACAGTGGATCCCTGGACCCTAAGCTTATTGAAATCATTGACAACAGACTTATTTTGCCAGAGGAAGCAGTCATAGAGGGCATACATCCACCATACCTTCTCGCCGTCAAGTCCTTCGTCACTGATTTCCATGCCAGTGACTATCCAAAGATGAGCCCAAGGGACCGGCTGCAGTACGATGACTTTGTGTCTTTTTTAGACATACTCACCAGTCTGTATGTGCTACCGTATATTTCTTCCCTACTTGCAACATATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.63

Weight (kDa)

5.39

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 240, 253
AcoI YGGCCR 1 cut(s) 114
AfaI GTAC 3 cut(s) 140, 201, 413
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 4 cut(s) 76, 146, 206, 269
AhdI GACNNNNNGTC 1 cut(s) 424
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 2 cut(s) 157, 262
AluI AGCT 2 cut(s) 157, 262
AlwI GGATC 2 cut(s) 240, 253
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 406
Asp700I GAANNNNTTC 1 cut(s) 201
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 253, 400
AsuHPI GGTGA 2 cut(s) 163, 436
AvaII GGWCC 2 cut(s) 253, 400
BalI TGGCCA 1 cut(s) 116
BamHI GGATCC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 395
BbvI GCAGC 1 cut(s) 393
BceAI ACGGC 1 cut(s) 326
BciT130I CCWGG 1 cut(s) 251
BclI TGATCA 1 cut(s) 81
BfaI CTAG 3 cut(s) 24, 66, 158
BfmI CTRYAG 1 cut(s) 407
BisI GCNGC 1 cut(s) 407
BlsI GCNGC 1 cut(s) 408
BmcAI AGTACT 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 251
Bme18I GGWCC 2 cut(s) 253, 400
BmeRI GACNNNNNGTC 1 cut(s) 424
BmgT120I GGNCC 2 cut(s) 253, 400
BmiI GGNNCC 3 cut(s) 247, 255, 401
BmrFI CCNGG 1 cut(s) 251
BmsI GCATC 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 258
BsaJI CCNNGG 3 cut(s) 228, 249, 395
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 3 cut(s) 174, 372, 447
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 3 cut(s) 228, 249, 395
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 148
BseNI ACTGG 3 cut(s) 174, 372, 447
BseRI GAGGAG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 393
BshFI GGCC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 403
BslFI GGGAC 1 cut(s) 413
BslI CCNNNNNNNGG 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 413
BsnI GGCC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 395
Bsp143I GATC 2 cut(s) 81, 245
BspANI GGCC 1 cut(s) 116
BspLI GGNNCC 3 cut(s) 247, 255, 401
BspMAI CTGCAG 1 cut(s) 411
BspPI GGATC 2 cut(s) 240, 253
BsrFI RCCGGY 1 cut(s) 402
BsrI ACTGG 3 cut(s) 174, 372, 447
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 3 cut(s) 228, 249, 395
BssMI GATC 2 cut(s) 81, 245
BssT1I CCWWGG 2 cut(s) 228, 395
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 3 cut(s) 48, 242, 465
Bst6I CTCTTC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 258
BstENI CCTNNNNNAGG 1 cut(s) 146
BstF5I GGATG 1 cut(s) 322
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 2 cut(s) 84, 248
BstMBI GATC 2 cut(s) 81, 245
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 407
BstV1I GCAGC 1 cut(s) 393
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
BsuRI GGCC 1 cut(s) 116
BtsCI GGATG 1 cut(s) 322
BtsIMutI CAGTG 3 cut(s) 247, 357, 379
Cac8I GCNNGC 1 cut(s) 109
CfoI GCGC 1 cut(s) 107
Cfr10I RCCGGY 1 cut(s) 402
Cfr13I GGNCC 2 cut(s) 253, 400
Csp6I GTAC 3 cut(s) 139, 200, 412
CviAII CATG 2 cut(s) 112, 368
CviJI RGCY 6 cut(s) 116, 157, 185, 262, 393, 406
CviKI_1 RGCY 6 cut(s) 116, 157, 185, 262, 393, 406
CviQI GTAC 3 cut(s) 139, 200, 412
DdeI CTNAG 1 cut(s) 258
DpnI GATC 2 cut(s) 83, 247
DpnII GATC 2 cut(s) 81, 245
DriI GACNNNNNGTC 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 141
Eam1105I GACNNNNNGTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 141
Eco130I CCWWGG 2 cut(s) 228, 395
Eco24I GRGCYC 1 cut(s) 395
Eco47I GGWCC 2 cut(s) 253, 400
EcoNI CCTNNNNNAGG 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 2 cut(s) 228, 395
EcoT38I GRGCYC 1 cut(s) 395
ErhI CCWWGG 2 cut(s) 228, 395
FaeI CATG 2 cut(s) 115, 371
FaqI GGGAC 1 cut(s) 413
FatI CATG 2 cut(s) 111, 367
FbaI TGATCA 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 407
FokI GGATG 1 cut(s) 309
FriOI GRGCYC 1 cut(s) 395
Fsp4HI GCNGC 1 cut(s) 407
FspBI CTAG 3 cut(s) 24, 66, 158
GlaI GCGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 407
HaeIII GGCC 1 cut(s) 116
HapII CCGG 1 cut(s) 403
HhaI GCGC 1 cut(s) 107
Hin1II CATG 2 cut(s) 115, 371
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 2 cut(s) 76, 99
HpaII CCGG 1 cut(s) 403
HphI GGTGA 2 cut(s) 163, 436
Hpy188I TCNGA 2 cut(s) 81, 194
Hpy188III TCNNGA 1 cut(s) 85
HpyAV CCTTC 3 cut(s) 175, 344, 361
HpyCH4III ACNGT 3 cut(s) 48, 242, 465
HpyCH4V TGCA 2 cut(s) 409, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 258
Hsp92II CATG 2 cut(s) 115, 371
HspAI GCGC 1 cut(s) 105
Ksp22I TGATCA 1 cut(s) 81
Kzo9I GATC 2 cut(s) 81, 245
LpnPI CCDG 9 cut(s) 70, 93, 155, 236, 263, 309, 385, 416, 460
Lsp1109I GCAGC 1 cut(s) 393
LweI GCATC 1 cut(s) 243
MaeI CTAG 3 cut(s) 24, 66, 158
MaeIII GTNAC 2 cut(s) 355, 374
MalI GATC 2 cut(s) 83, 247
MboI GATC 2 cut(s) 81, 245
MboII GAAGA 3 cut(s) 9, 158, 465
MflI RGATCY 1 cut(s) 245
MhlI GDGCHC 1 cut(s) 395
MlsI TGGCCA 1 cut(s) 116
MluNI TGGCCA 1 cut(s) 116
MnlI CCTC 6 cut(s) 20, 23, 142, 154, 292, 307
Mox20I TGGCCA 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 201
MscI TGGCCA 1 cut(s) 116
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 372
Msp20I TGGCCA 1 cut(s) 116
MspI CCGG 1 cut(s) 403
MspR9I CCNGG 1 cut(s) 251
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 2 cut(s) 81, 245
NlaIII CATG 2 cut(s) 115, 371
NlaIV GGNNCC 3 cut(s) 247, 255, 401
NmuCI GTSAC 2 cut(s) 355, 374
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 2 cut(s) 76, 99
PkrI GCNGC 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 3 cut(s) 247, 255, 401
PspPI GGNCC 2 cut(s) 253, 400
PstI CTGCAG 1 cut(s) 411
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 3 cut(s) 140, 201, 413
RsaNI GTAC 3 cut(s) 139, 200, 412
RseI CAYNNNNRTG 1 cut(s) 372
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 1 cut(s) 407
Sau3AI GATC 2 cut(s) 81, 245
Sau96I GGNCC 2 cut(s) 253, 400
ScaI AGTACT 1 cut(s) 201
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 1 cut(s) 395
SetI ASST 5 cut(s) 144, 153, 159, 264, 336
SfaNI GCATC 1 cut(s) 243
SfcI CTRYAG 1 cut(s) 407
SinI GGWCC 2 cut(s) 253, 400
SmiMI CAYNNNNRTG 1 cut(s) 372
SspMI CTAG 3 cut(s) 24, 66, 158
StyD4I CCNGG 1 cut(s) 249
StyI CCWWGG 2 cut(s) 228, 395
TaaI ACNGT 3 cut(s) 48, 242, 465
TatI WGTACW 1 cut(s) 199
TfiI GAWTC 2 cut(s) 76, 99
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 3 cut(s) 247, 364, 379
TseFI GTSAC 2 cut(s) 355, 374
TseI GCWGC 1 cut(s) 406
Tsp45I GTSAC 2 cut(s) 355, 374
TspRI CASTG 3 cut(s) 247, 364, 379
VpaK11BI GGWCC 2 cut(s) 253, 400
XagI CCTNNNNNAGG 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 201
XspI CTAG 3 cut(s) 24, 66, 158
ZrmI AGTACT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.