Rh2CG610900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000442
Physical Location & Seq
Reverse (-)
78871815 .. 78872442
628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG610900.1

Sequence Viewer

Length: 525 bp
ATGTTATTGCTGCTTCGCCACCCTTATTTTCAATCATTGGATGAAGCTCTGAGATTCATTCCATCCGCCCTTAAATTACTTAATGGCTTAAAGGGTGAAAAGTTTCCAGTTCCAGGAACTGAGGGTATACCCAATCTAGCAACAATATTGCCTAACAGATATTATTATGTCGATTGGAAACGTGCATACAAGCATCTATGCCGCACAAAGAGAGTTAATATTTCAGAGTCAATTGGCAGAATTGAATCTGAAGATAACAGACGTGGATTTACTTCTCTATATAATGCTGAAAATAATGGCACACCGTATAAAGATACCGATGAGATAGATGAGCTGAAATTTTATGCAAAGGCGTGTAAACATCTAGTAAGATATATGAAGATACGTAGCGAAAGTGATTTACGCCAAGCCTTGGGTAAGGCGTTTGGTCTCGTGCCCGGAAAAATGTTCAAGCTTTTCTGGATATATGCAGGATGTCACGACGGGAAAGTTAACTTGGATTTTGTCAGACCTCTGCGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

20.21

Weight (kDa)

9.56

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 412
AccI GTMKAC 1 cut(s) 127
AciI CCGC 2 cut(s) 66, 202
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 1 cut(s) 270
AfiI CCNNNNNNNGG 2 cut(s) 113, 412
AgsI TTSAA 3 cut(s) 32, 245, 451
AjiI CACGTC 1 cut(s) 263
AjnI CCWGG 1 cut(s) 112
AjuI GAANNNNNNNTTGG 2 cut(s) 479, 511
AluBI AGCT 3 cut(s) 47, 334, 454
AluI AGCT 3 cut(s) 47, 334, 454
Alw26I GTCTC 1 cut(s) 434
AlwNI CAGNNNCTG 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 10
ApoI RAATTY 1 cut(s) 338
Asp700I GAANNNNTTC 1 cut(s) 102
AsuC2I CCSGG 1 cut(s) 438
AsuHPI GGTGA 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 438
BauI CACGAG 1 cut(s) 431
BccI CCATC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 114
BcnI CCSGG 1 cut(s) 438
BcoDI GTCTC 1 cut(s) 434
BfaI CTAG 2 cut(s) 137, 365
BisI GCNGC 2 cut(s) 11, 202
BlsI GCNGC 2 cut(s) 12, 203
Bme1390I CCNGG 2 cut(s) 114, 438
BmgBI CACGTC 1 cut(s) 263
BmrFI CCNGG 2 cut(s) 114, 438
BmsI GCATC 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 438
BsaAI YACGTR 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 434
BsaJI CCNNGG 1 cut(s) 411
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 412
Bse1I ACTGG 1 cut(s) 107
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 3 cut(s) 46, 62, 479
BseLI CCNNNNNNNGG 2 cut(s) 113, 412
BseMII CTCAG 2 cut(s) 41, 111
BseNI ACTGG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 438
BsiSI CCGG 1 cut(s) 438
BslI CCNNNNNNNGG 2 cut(s) 113, 412
BsmAI GTCTC 1 cut(s) 434
Bso31I GGTCTC 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 438
BspACI CCGC 2 cut(s) 66, 202
BspCNI CTCAG 2 cut(s) 42, 112
BspTNI GGTCTC 1 cut(s) 434
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 411
BssNAI GTATAC 1 cut(s) 128
BssSI CACGAG 1 cut(s) 431
BssT1I CCWWGG 1 cut(s) 411
Bst1107I GTATAC 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 431
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 306
BstBAI YACGTR 1 cut(s) 386
BstDEI CTNAG 2 cut(s) 50, 120
BstF5I GGATG 3 cut(s) 46, 62, 479
BstMAI GTCTC 1 cut(s) 434
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 2 cut(s) 112, 436
BstSLI GKGCMC 1 cut(s) 438
BstSNI TACGTA 1 cut(s) 386
BstZ17I GTATAC 1 cut(s) 128
BtrI CACGTC 1 cut(s) 263
BtsCI GGATG 3 cut(s) 46, 62, 479
CaiI CAGNNNCTG 1 cut(s) 119
CviJI RGCY 5 cut(s) 47, 87, 334, 410, 454
CviKI_1 RGCY 5 cut(s) 47, 87, 334, 410, 454
DdeI CTNAG 2 cut(s) 50, 120
EciI GGCGGA 1 cut(s) 55
Eco105I TACGTA 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 411
Eco31I GGTCTC 1 cut(s) 434
Eco57I CTGAAG 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 2 cut(s) 11, 202
FokI GGATG 3 cut(s) 49, 53, 486
Fsp4HI GCNGC 2 cut(s) 11, 202
FspBI CTAG 2 cut(s) 137, 365
GluI GCNGC 2 cut(s) 11, 202
HapII CCGG 1 cut(s) 438
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HindIII AAGCTT 1 cut(s) 452
HinfI GANTC 3 cut(s) 54, 227, 245
HpaI GTTAAC 1 cut(s) 493
HpaII CCGG 1 cut(s) 438
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 3 cut(s) 128, 359, 493
Hpy188I TCNGA 4 cut(s) 51, 226, 250, 509
Hpy188III TCNNGA 2 cut(s) 460, 479
Hpy8I GTNNAC 3 cut(s) 128, 359, 493
Hpy99I CGWCG 1 cut(s) 485
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4IV ACGT 3 cut(s) 181, 262, 385
HpyCH4V TGCA 3 cut(s) 185, 347, 470
HpyF3I CTNAG 2 cut(s) 50, 120
HpySE526I ACGT 3 cut(s) 181, 262, 385
KspAI GTTAAC 1 cut(s) 493
LpnPI CCDG 6 cut(s) 99, 120, 126, 445, 451, 456
LweI GCATC 1 cut(s) 202
MaeI CTAG 2 cut(s) 137, 365
MaeII ACGT 3 cut(s) 181, 262, 385
MaeIII GTNAC 1 cut(s) 476
MboII GAAGA 2 cut(s) 263, 391
MfeI CAATTG 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 438
MluCI AATT 5 cut(s) 74, 231, 240, 338, 520
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 2 cut(s) 115, 522
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 6 cut(s) 72, 81, 89, 216, 492, 523
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 2 cut(s) 114, 438
MunI CAATTG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 114
NciI CCSGG 1 cut(s) 438
NmuCI GTSAC 1 cut(s) 476
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 2 cut(s) 54, 245
PflMI CCANNNNNTGG 1 cut(s) 412
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 2 cut(s) 12, 203
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
Ppu21I YACGTR 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PstNI CAGNNNCTG 1 cut(s) 119
SaqAI TTAA 6 cut(s) 72, 81, 89, 216, 492, 523
SatI GCNGC 2 cut(s) 11, 202
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 2 cut(s) 114, 438
SduI GDGCHC 1 cut(s) 438
SetI ASST 7 cut(s) 49, 184, 265, 336, 388, 456, 514
SfaNI GCATC 1 cut(s) 202
SnaBI TACGTA 1 cut(s) 386
Sse9I AATT 5 cut(s) 74, 231, 240, 338, 520
SsiI CCGC 2 cut(s) 66, 202
SspI AATATT 2 cut(s) 147, 220
SspMI CTAG 2 cut(s) 137, 365
StyD4I CCNGG 2 cut(s) 112, 436
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 1 cut(s) 306
TaiI ACGT 3 cut(s) 184, 265, 388
TaqI TCGA 1 cut(s) 171
TasI AATT 5 cut(s) 74, 231, 240, 338, 520
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 2 cut(s) 54, 245
Tru1I TTAA 6 cut(s) 72, 81, 89, 216, 492, 523
Tru9I TTAA 6 cut(s) 72, 81, 89, 216, 492, 523
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 3 cut(s) 46, 57, 392
Van91I CCANNNNNTGG 1 cut(s) 412
XapI RAATTY 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 2 cut(s) 137, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.