FvH4_6g46882

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000442
Physical Location & Seq
Forward (+)
35660839 .. 35661683
845 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46882.t1

Sequence Viewer

Length: 654 bp
ATGGATATGATTCAAGACATTCGTTCAAAAAAGGAGAGGGGCGTTCATAGTGGATCCCTAGCTTTACATCACATTATAGTGAAGGATTCTACAGCTAGGATTCCATGTGATACCATTTACGATCCTGTAGTTCACAAGGATTATATTGAGGGCTACAAAGATTTCTTTAACGATTTATATAGCGGTAATGAACCGCTGGACGACCCCAATTATGTAGACCTCAAGTCATATGTGATGAAGTTGAAGACATTGCGTGAATTGTTATTGTTACTTCGCCACCCATATTTTCAACATACGGGTCAGGCTCTGAGATTCATTCCGTTGGCCTTTGAAGTACTTAAAAGGTTAGAGGGTTATACGTTTCAGGTCCGATATCAAGCGTCAGCAAAGTCTCACAAAACTCCAGTCACTTGGCAGCATGTATATAGTGCTCTACGGAAAGAAGGCGAGGAAGTTAATATTTCAAAGTCTATTAACAAACTTAGTTCAGATCAAAAGAAAGCATTTAAGGGTATATACGACCGCCGAAAGAAGGATGGATCCAAGAAGGATAAGTATATTGATACCGATGCGATACATGAGCTCAAGTTTTATAAAAGGGTGTCTAGACATCACGCACAACCACATAAGCTGGATGATGTTGAAAAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

25.48

Weight (kDa)

9.29

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 594
AccI GTMKAC 1 cut(s) 216
AciI CCGC 3 cut(s) 183, 194, 523
AclWI GGATC 5 cut(s) 48, 61, 116, 534, 547
AfaI GTAC 1 cut(s) 336
AfiI CCNNNNNNNGG 1 cut(s) 532
AgsI TTSAA 7 cut(s) 14, 27, 244, 290, 332, 465, 644
AhdI GACNNNNNGTC 1 cut(s) 223
AluBI AGCT 4 cut(s) 62, 95, 583, 631
AluI AGCT 4 cut(s) 62, 95, 583, 631
Alw21I GWGCWC 2 cut(s) 433, 585
Alw26I GTCTC 1 cut(s) 396
AlwI GGATC 5 cut(s) 48, 61, 116, 534, 547
AlwNI CAGNNNCTG 1 cut(s) 307
AoxI GGCC 1 cut(s) 324
ApeKI GCWGC 1 cut(s) 415
ArsI GACNNNNNNTTYG 2 cut(s) 390, 422
AspS9I GGNCC 1 cut(s) 367
AvaII GGWCC 1 cut(s) 367
BamHI GGATCC 2 cut(s) 53, 539
BanII GRGCYC 1 cut(s) 585
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 2 cut(s) 433, 585
BbvI GCAGC 1 cut(s) 427
BccI CCATC 1 cut(s) 530
BcoDI GTCTC 1 cut(s) 396
BfaI CTAG 3 cut(s) 59, 96, 606
BfmI CTRYAG 2 cut(s) 90, 126
BisI GCNGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 417
BmcAI AGTACT 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 367
BmeRI GACNNNNNGTC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 367
BmiI GGNNCC 2 cut(s) 55, 541
BmsI GCATC 1 cut(s) 559
BpiI GAAGAC 1 cut(s) 251
BpmI CTGGAG 1 cut(s) 387
BpuEI CTTGAG 2 cut(s) 206, 569
Bsc4I CCNNNNNNNGG 1 cut(s) 532
Bse1I ACTGG 1 cut(s) 404
Bse3DI GCAATG 1 cut(s) 248
BseGI GGATG 2 cut(s) 541, 640
BseLI CCNNNNNNNGG 1 cut(s) 532
BseMI GCAATG 1 cut(s) 248
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 1 cut(s) 404
BseXI GCAGC 1 cut(s) 427
Bsh1285I CGRYCG 1 cut(s) 523
BshFI GGCC 1 cut(s) 326
BsiEI CGRYCG 1 cut(s) 523
BsiHKAI GWGCWC 2 cut(s) 433, 585
BslI CCNNNNNNNGG 1 cut(s) 532
BsmAI GTCTC 1 cut(s) 396
BsnI GGCC 1 cut(s) 326
Bsp1286I GDGCHC 2 cut(s) 433, 585
Bsp143I GATC 4 cut(s) 53, 121, 490, 539
BspACI CCGC 3 cut(s) 183, 194, 523
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 1 cut(s) 300
BspLI GGNNCC 2 cut(s) 55, 541
BspPI GGATC 5 cut(s) 48, 61, 116, 534, 547
BsrDI GCAATG 1 cut(s) 248
BsrI ACTGG 1 cut(s) 404
BssMI GATC 4 cut(s) 53, 121, 490, 539
BstDEI CTNAG 2 cut(s) 308, 482
BstF5I GGATG 2 cut(s) 541, 640
BstKTI GATC 4 cut(s) 56, 124, 493, 542
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 4 cut(s) 53, 121, 490, 539
BstMCI CGRYCG 1 cut(s) 523
BstNSI RCATGY 1 cut(s) 422
BstSFI CTRYAG 2 cut(s) 90, 126
BstV1I GCAGC 1 cut(s) 427
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 2 cut(s) 53, 539
BstXI CCANNNNNNTGG 1 cut(s) 411
BstYI RGATCY 2 cut(s) 53, 539
BsuRI GGCC 1 cut(s) 326
BtsCI GGATG 2 cut(s) 541, 640
CaiI CAGNNNCTG 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 367
CseI GACGC 1 cut(s) 369
Csp6I GTAC 1 cut(s) 335
CviAII CATG 3 cut(s) 105, 419, 578
CviJI RGCY 7 cut(s) 62, 95, 153, 305, 326, 583, 631
CviKI_1 RGCY 7 cut(s) 62, 95, 153, 305, 326, 583, 631
CviQI GTAC 1 cut(s) 335
DdeI CTNAG 2 cut(s) 308, 482
DpnI GATC 4 cut(s) 55, 123, 492, 541
DpnII GATC 4 cut(s) 53, 121, 490, 539
DriI GACNNNNNGTC 1 cut(s) 223
Eam1105I GACNNNNNGTC 1 cut(s) 223
Ecl136II GAGCTC 1 cut(s) 583
Eco24I GRGCYC 1 cut(s) 585
Eco32I GATATC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 367
Eco53kI GAGCTC 1 cut(s) 583
EcoICRI GAGCTC 1 cut(s) 583
EcoRV GATATC 1 cut(s) 374
EcoT38I GRGCYC 1 cut(s) 585
FaeI CATG 3 cut(s) 108, 422, 581
FatI CATG 3 cut(s) 104, 418, 577
FauNDI CATATG 1 cut(s) 229
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 416
FokI GGATG 2 cut(s) 548, 647
FriOI GRGCYC 1 cut(s) 585
Fsp4HI GCNGC 1 cut(s) 416
FspBI CTAG 3 cut(s) 59, 96, 606
GluI GCNGC 1 cut(s) 416
GsuI CTGGAG 1 cut(s) 387
HaeIII GGCC 1 cut(s) 326
HgaI GACGC 1 cut(s) 369
Hin1II CATG 3 cut(s) 108, 422, 581
HinfI GANTC 4 cut(s) 10, 86, 100, 312
Hpy166II GTNNAC 2 cut(s) 133, 217
Hpy188I TCNGA 3 cut(s) 309, 371, 490
Hpy188III TCNNGA 2 cut(s) 14, 606
Hpy8I GTNNAC 2 cut(s) 133, 217
HpyAV CCTTC 4 cut(s) 76, 437, 526, 541
HpyCH4IV ACGT 1 cut(s) 359
HpyF3I CTNAG 2 cut(s) 308, 482
HpySE526I ACGT 1 cut(s) 359
Hsp92II CATG 3 cut(s) 108, 422, 581
Kzo9I GATC 4 cut(s) 53, 121, 490, 539
LpnPI CCDG 6 cut(s) 138, 182, 287, 350, 417, 617
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 1 cut(s) 559
MaeI CTAG 3 cut(s) 59, 96, 606
MaeII ACGT 1 cut(s) 359
MaeIII GTNAC 2 cut(s) 267, 406
MalI GATC 4 cut(s) 55, 123, 492, 541
MboI GATC 4 cut(s) 53, 121, 490, 539
MboII GAAGA 1 cut(s) 256
MflI RGATCY 2 cut(s) 53, 539
MhlI GDGCHC 2 cut(s) 433, 585
MluCI AATT 2 cut(s) 208, 257
MnlI CCTC 5 cut(s) 30, 142, 230, 343, 442
MseI TTAA 5 cut(s) 168, 339, 456, 474, 507
MslI CAYNNNNRTG 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 196
NdeI CATATG 1 cut(s) 229
NdeII GATC 4 cut(s) 53, 121, 490, 539
NlaIII CATG 3 cut(s) 108, 422, 581
NlaIV GGNNCC 2 cut(s) 55, 541
NmuCI GTSAC 1 cut(s) 406
NspI RCATGY 1 cut(s) 422
PfeI GAWTC 4 cut(s) 10, 86, 100, 312
PkrI GCNGC 1 cut(s) 417
PsiI TTATAA 1 cut(s) 594
Psp124BI GAGCTC 1 cut(s) 585
PspN4I GGNNCC 2 cut(s) 55, 541
PspPI GGNCC 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 307
PsuI RGATCY 2 cut(s) 53, 539
RsaI GTAC 1 cut(s) 336
RsaNI GTAC 1 cut(s) 335
RseI CAYNNNNRTG 1 cut(s) 77
SacI GAGCTC 1 cut(s) 585
SaqAI TTAA 5 cut(s) 168, 339, 456, 474, 507
SatI GCNGC 1 cut(s) 416
Sau3AI GATC 4 cut(s) 53, 121, 490, 539
Sau96I GGNCC 1 cut(s) 367
ScaI AGTACT 1 cut(s) 336
SduI GDGCHC 2 cut(s) 433, 585
SetI ASST 8 cut(s) 64, 97, 222, 347, 362, 369, 585, 633
SfaNI GCATC 1 cut(s) 559
SfcI CTRYAG 2 cut(s) 90, 126
SinI GGWCC 1 cut(s) 367
SmiMI CAYNNNNRTG 1 cut(s) 77
SmlI CTYRAG 2 cut(s) 221, 584
SmoI CTYRAG 2 cut(s) 221, 584
Sse9I AATT 2 cut(s) 208, 257
SsiI CCGC 3 cut(s) 183, 194, 523
SspI AATATT 1 cut(s) 460
SspMI CTAG 3 cut(s) 59, 96, 606
SstI GAGCTC 1 cut(s) 585
TaiI ACGT 1 cut(s) 362
TasI AATT 2 cut(s) 208, 257
TatI WGTACW 1 cut(s) 334
TfiI GAWTC 4 cut(s) 10, 86, 100, 312
Tru1I TTAA 5 cut(s) 168, 339, 456, 474, 507
Tru9I TTAA 5 cut(s) 168, 339, 456, 474, 507
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 1 cut(s) 415
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 4 cut(s) 35, 204, 251, 304
TspGWI ACGGA 2 cut(s) 309, 451
VpaK11BI GGWCC 1 cut(s) 367
XbaI TCTAGA 1 cut(s) 605
XceI RCATGY 1 cut(s) 422
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 3 cut(s) 59, 96, 606
ZrmI AGTACT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.