Rh2AG631900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000442
Physical Location & Seq
Forward (+)
85833125 .. 85834692
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG631900.1

Sequence Viewer

Length: 930 bp
ATGGCATTTCTTCCTCACACTCAGGGCGCTGGAAGACTGTATCTTGAGGACGTGAAGGGCTCGGCATCAATGGAGAAGAAGAAATTTTATCTGAAAGATATTCTGGGGGAGATTACTTGGAAAATAACTAATGGGATCGAAAGTGGGTCTTTAGATCCCAAGAAGATGCCTATTTTGGATGATCGAGCCTCTTTGCCAGATGAGCCCTATATCATTGGAAAGTACCCGAATTATTTGGAGTCGGTGAAGCAGTTTTTGAAGGATATGCAGGAAGGAGATTGGGAGCAAATGACAGCAACAGAACGGCTTCTGTTTGATGATTTCAAAAGCTATCTCAACAAAGTCACCAATGTGAGGCATCTGATTCTGCTTGCTAGACACCCTCATTTTCACACACCTACACAAGAATTGGTGTTCATCCCATCAGCTCTGGATCAGTTTTATAGCATCCCGAAGAACCCCTTCTCCAATTCAAAGCGATACTTCCCGGAACTATGTGATGAGCATCACAATAGTCCGGCTGATATACCTGCAACAATTGATGATCCAGAGGCAACACTGATGAAATGGGAGATTGCATATACGAAGATGGTGCAAAGGAATGGCAGAAAGGTGAACATTGAGGGGTTCATTGCTCAACTTCCTCCAGAATTTCAGAAACAATTCAAGCATGGAATCAAGCATAAGCTGGATGTTCCACACAAATACCAGAACAGTAATCCGGTTGATGAGCTGAACTTCATTCGCAACAGCTTGAAGCATATTCACGAAAAGTTTCCAAATGAAACGGTAGTTGAAGATATGGAGATACTCAAGCAGCTGAAAACGGTAACTTCAATTTATTCCATGGAGATGTTTCAGTTCTACTGGTGCTATGATGGCCATGCTAGGGGAACCATCGATCTCAACTTCATCAACCAGGCCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

36.0

Weight (kDa)

6.23

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 538
AclWI GGATC 4 cut(s) 143, 149, 441, 539
AcoI YGGCCR 1 cut(s) 880
AcsI RAATTY 2 cut(s) 83, 650
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 2 cut(s) 354, 889
AgsI TTSAA 7 cut(s) 259, 325, 474, 667, 757, 797, 837
AjiI CACGTC 1 cut(s) 52
AjnI CCWGG 1 cut(s) 918
AleI CACNNNNGTG 1 cut(s) 350
AloI GAACNNNNNNTCC 2 cut(s) 449, 481
AluBI AGCT 6 cut(s) 330, 428, 688, 733, 753, 820
AluI AGCT 6 cut(s) 330, 428, 688, 733, 753, 820
AlwI GGATC 4 cut(s) 143, 149, 441, 539
AoxI GGCC 2 cut(s) 880, 921
ApeKI GCWGC 1 cut(s) 817
ApoI RAATTY 2 cut(s) 83, 650
Asp700I GAANNNNTTC 4 cut(s) 306, 461, 662, 774
AspLEI GCGC 1 cut(s) 29
AsuC2I CCSGG 2 cut(s) 488, 925
AsuHPI GGTGA 3 cut(s) 256, 337, 625
BalI TGGCCA 1 cut(s) 882
BanII GRGCYC 2 cut(s) 62, 207
BbsI GAAGAC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 829
BccI CCATC 4 cut(s) 430, 583, 872, 905
BceAI ACGGC 1 cut(s) 320
BcgI CGANNNNNNTGC 2 cut(s) 574, 608
BciT130I CCWGG 1 cut(s) 920
BcnI CCSGG 2 cut(s) 488, 925
BfaI CTAG 2 cut(s) 375, 888
BfoI RGCGCY 1 cut(s) 30
BfuAI ACCTGC 1 cut(s) 538
BisI GCNGC 1 cut(s) 818
BlsI GCNGC 1 cut(s) 819
Bme1390I CCNGG 3 cut(s) 488, 920, 925
BmgBI CACGTC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 895
BmrFI CCNGG 3 cut(s) 488, 920, 925
BmsI GCATC 5 cut(s) 74, 156, 367, 456, 514
BpiI GAAGAC 1 cut(s) 40
BpmI CTGGAG 1 cut(s) 630
BpuEI CTTGAG 2 cut(s) 65, 797
BpuMI CCSGG 2 cut(s) 488, 925
Bsa29I ATCGAT 1 cut(s) 900
BsaBI GATNNNNATC 1 cut(s) 504
BsaJI CCNNGG 1 cut(s) 846
BsaWI WCCGGW 1 cut(s) 721
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 889
Bse1I ACTGG 1 cut(s) 872
Bse3DI GCAATG 1 cut(s) 630
Bse8I GATNNNNATC 1 cut(s) 504
BseBI CCWGG 1 cut(s) 920
BseCI ATCGAT 1 cut(s) 900
BseDI CCNNGG 1 cut(s) 846
BseGI GGATG 4 cut(s) 184, 417, 447, 697
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 2 cut(s) 354, 889
BseMI GCAATG 1 cut(s) 630
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 872
BseXI GCAGC 1 cut(s) 829
BshFI GGCC 2 cut(s) 882, 923
BshVI ATCGAT 1 cut(s) 900
BsiSI CCGG 4 cut(s) 488, 518, 722, 924
BslI CCNNNNNNNGG 2 cut(s) 354, 889
BsnI GGCC 2 cut(s) 882, 923
Bsp1286I GDGCHC 2 cut(s) 62, 207
Bsp143I GATC 6 cut(s) 135, 154, 181, 433, 544, 901
Bsp19I CCATGG 1 cut(s) 846
BspANI GGCC 2 cut(s) 882, 923
BspCNI CTCAG 1 cut(s) 34
BspDI ATCGAT 1 cut(s) 900
BspLI GGNNCC 1 cut(s) 895
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 4 cut(s) 143, 149, 441, 539
BsrDI GCAATG 1 cut(s) 630
BsrI ACTGG 1 cut(s) 872
BssECI CCNNGG 1 cut(s) 846
BssMI GATC 6 cut(s) 135, 154, 181, 433, 544, 901
BssT1I CCWWGG 1 cut(s) 846
Bst2UI CCWGG 1 cut(s) 920
Bst4CI ACNGT 4 cut(s) 39, 716, 790, 829
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 1 cut(s) 21
BstDSI CCRYGG 1 cut(s) 846
BstF5I GGATG 4 cut(s) 184, 417, 447, 697
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 6 cut(s) 138, 157, 184, 436, 547, 904
BstMBI GATC 6 cut(s) 135, 154, 181, 433, 544, 901
BstMWI GCNNNNNNNGC 2 cut(s) 202, 879
BstNI CCWGG 1 cut(s) 920
BstSCI CCNGG 3 cut(s) 486, 918, 923
BstV1I GCAGC 1 cut(s) 829
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 900
BsuRI GGCC 2 cut(s) 882, 923
BsuTUI ATCGAT 1 cut(s) 900
BtgI CCRYGG 1 cut(s) 846
BtrI CACGTC 1 cut(s) 52
BtsCI GGATG 4 cut(s) 184, 417, 447, 697
BtsIMutI CAGTG 1 cut(s) 557
BveI ACCTGC 1 cut(s) 538
Cac8I GCNNGC 1 cut(s) 372
CfoI GCGC 1 cut(s) 29
ClaI ATCGAT 1 cut(s) 900
Csp6I GTAC 1 cut(s) 223
CviAII CATG 3 cut(s) 671, 847, 884
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 1 cut(s) 21
DpnI GATC 6 cut(s) 137, 156, 183, 435, 546, 903
DpnII GATC 6 cut(s) 135, 154, 181, 433, 544, 901
EaeI YGGCCR 1 cut(s) 880
Eco130I CCWWGG 1 cut(s) 846
Eco24I GRGCYC 2 cut(s) 62, 207
EcoRII CCWGG 1 cut(s) 918
EcoT14I CCWWGG 1 cut(s) 846
EcoT38I GRGCYC 2 cut(s) 62, 207
ErhI CCWWGG 1 cut(s) 846
FaeI CATG 3 cut(s) 674, 850, 887
FalI AAGNNNNNCTT 6 cut(s) 133, 165, 446, 478, 467, 499
FatI CATG 3 cut(s) 670, 846, 883
Fnu4HI GCNGC 1 cut(s) 818
FokI GGATG 4 cut(s) 191, 404, 434, 704
FriOI GRGCYC 2 cut(s) 62, 207
Fsp4HI GCNGC 1 cut(s) 818
FspBI CTAG 2 cut(s) 375, 888
GlaI GCGC 1 cut(s) 28
GluI GCNGC 1 cut(s) 818
GsuI CTGGAG 1 cut(s) 630
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 2 cut(s) 882, 923
HapII CCGG 4 cut(s) 488, 518, 722, 924
HhaI GCGC 1 cut(s) 29
Hin1II CATG 3 cut(s) 674, 850, 887
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HinfI GANTC 3 cut(s) 239, 364, 675
HpaII CCGG 4 cut(s) 488, 518, 722, 924
HphI GGTGA 3 cut(s) 256, 337, 625
Hpy166II GTNNAC 1 cut(s) 616
Hpy188I TCNGA 3 cut(s) 93, 363, 657
Hpy188III TCNNGA 6 cut(s) 44, 431, 451, 548, 647, 767
Hpy8I GTNNAC 1 cut(s) 616
HpyAV CCTTC 4 cut(s) 49, 253, 266, 472
HpyCH4III ACNGT 4 cut(s) 39, 716, 790, 829
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 4 cut(s) 268, 533, 578, 595
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 879
HpyF3I CTNAG 1 cut(s) 21
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 3 cut(s) 674, 850, 887
HspAI GCGC 1 cut(s) 27
Kzo9I GATC 6 cut(s) 135, 154, 181, 433, 544, 901
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 1 cut(s) 829
LweI GCATC 5 cut(s) 74, 156, 367, 456, 514
MaeI CTAG 2 cut(s) 375, 888
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 343, 829
MalI GATC 6 cut(s) 137, 156, 183, 435, 546, 903
MboI GATC 6 cut(s) 135, 154, 181, 433, 544, 901
MboII GAAGA 7 cut(s) 45, 88, 91, 175, 466, 598, 809
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 2 cut(s) 62, 207
MlsI TGGCCA 1 cut(s) 882
MluCI AATT 8 cut(s) 83, 229, 407, 469, 537, 650, 662, 837
MluNI TGGCCA 1 cut(s) 882
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 8 cut(s) 24, 40, 199, 348, 393, 544, 616, 654
Mox20I TGGCCA 1 cut(s) 882
MroXI GAANNNNTTC 4 cut(s) 306, 461, 662, 774
MscI TGGCCA 1 cut(s) 882
MslI CAYNNNNRTG 2 cut(s) 350, 851
Msp20I TGGCCA 1 cut(s) 882
MspA1I CMGCKG 1 cut(s) 820
MspI CCGG 4 cut(s) 488, 518, 722, 924
MspR9I CCNGG 3 cut(s) 488, 920, 925
MunI CAATTG 1 cut(s) 537
MvaI CCWGG 1 cut(s) 920
MwoI GCNNNNNNNGC 2 cut(s) 202, 879
NciI CCSGG 2 cut(s) 488, 925
NcoI CCATGG 1 cut(s) 846
NdeII GATC 6 cut(s) 135, 154, 181, 433, 544, 901
NlaIII CATG 3 cut(s) 674, 850, 887
NlaIV GGNNCC 1 cut(s) 895
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 343
OliI CACNNNNGTG 1 cut(s) 350
PdmI GAANNNNTTC 4 cut(s) 306, 461, 662, 774
PfeI GAWTC 2 cut(s) 364, 675
PfoI TCCNGGA 1 cut(s) 486
PkrI GCNGC 1 cut(s) 819
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 918
PspGI CCWGG 1 cut(s) 918
PspN4I GGNNCC 1 cut(s) 895
PsuI RGATCY 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 820
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 2 cut(s) 350, 851
SatI GCNGC 1 cut(s) 818
Sau3AI GATC 6 cut(s) 135, 154, 181, 433, 544, 901
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 3 cut(s) 488, 920, 925
SduI GDGCHC 2 cut(s) 62, 207
SfaNI GCATC 5 cut(s) 74, 156, 367, 456, 514
SmiMI CAYNNNNRTG 2 cut(s) 350, 851
SmlI CTYRAG 2 cut(s) 44, 812
SmoI CTYRAG 2 cut(s) 44, 812
Sse9I AATT 8 cut(s) 83, 229, 407, 469, 537, 650, 662, 837
SspMI CTAG 2 cut(s) 375, 888
StyD4I CCNGG 3 cut(s) 486, 918, 923
StyI CCWWGG 1 cut(s) 846
TaaI ACNGT 4 cut(s) 39, 716, 790, 829
TaiI ACGT 1 cut(s) 54
TaqI TCGA 3 cut(s) 138, 184, 900
TasI AATT 8 cut(s) 83, 229, 407, 469, 537, 650, 662, 837
TfiI GAWTC 2 cut(s) 364, 675
TscAI CASTG 1 cut(s) 564
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 1 cut(s) 817
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 6 cut(s) 406, 578, 619, 730, 798, 901
TspRI CASTG 1 cut(s) 564
XapI RAATTY 2 cut(s) 83, 650
XmnI GAANNNNTTC 4 cut(s) 306, 461, 662, 774
XspI CTAG 2 cut(s) 375, 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.