RLG00000022284

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000442
Physical Location & Seq
Reverse (-)
82237087 .. 82238516
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022284

Sequence Viewer

Length: 696 bp
ATGGGTAGTGATGTCGATACGACGAACTATGCTAGAGCTTTAGGTCGGGGATGTGATCGGATCTGGTTTTGTGGAGACGCAGAGAATCCTGATCTTGGTGGAGGCGTTGGGGTCGCGATTTTGGGATGGTCGGAGATGACAACTAGGGATTGGGACGAGGAAGGCTTCATTTTTCCTGCAGATACGGTGATGGCTTGTCCTGCTAGATGGCTTCTGGCAGGGTCTGTCCATTGCGTCGATGTCCAAATCGGCAGGGAAGACGACGCTGACCCGTCTATGTTAGGTAGTATTGACGTCGGCGGCAGCTGCGTGGTGTTTCCCTCGACTGGTGTTGGCGACGGTGCCGCTGATGGTGGTTGGCTGGAAGTAAGTTTGAGCTGGAAGAGTGGAGGGGGCCAGCCACGCGTCACCATTTTCATTGAACCAAGTAAAAGTTGGAAAATGATGCTCCGCCTAAACCAAAGCCCACGTGTCCCACCTTTTTCCCGAGTGCTTCACACCCTCCCACACCTCATTGGCCAGTACGTGGGGCCCTCAATCACAGAACTCAATTTAGAGTGGGACCCTCTCCTTAAACGAATCAGCCAATGGCTTGCGAGCACTGTTGGAGAGAGGGGTGCCCTAGACAGGTGGTGCTTCCTCTTCCAGCCACCACGCTGGCCTTCTATGATTTTCGCTTCAGCTACCGGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.13

Weight (kDa)

4.75

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 297
AccB1I GGYRCC 2 cut(s) 341, 617
AccB7I CCANNNNNTGG 1 cut(s) 526
AccII CGCG 2 cut(s) 116, 405
AciI CCGC 3 cut(s) 300, 345, 451
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 517
AcuI CTGAAG 1 cut(s) 663
AcvI CACGTG 1 cut(s) 470
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 1 cut(s) 524
AfiI CCNNNNNNNGG 4 cut(s) 95, 326, 526, 627
AflIII ACRYGT 2 cut(s) 403, 469
AgsI TTSAA 1 cut(s) 422
AluBI AGCT 4 cut(s) 38, 306, 378, 683
AluI AGCT 4 cut(s) 38, 306, 378, 683
Alw21I GWGCWC 1 cut(s) 602
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 1 cut(s) 68
AlwNI CAGNNNCTG 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 486
AoxI GGCC 4 cut(s) 394, 517, 530, 659
ApaI GGGCCC 1 cut(s) 534
ApeKI GCWGC 2 cut(s) 303, 306
AspS9I GGNCC 4 cut(s) 394, 530, 531, 562
AsuHPI GGTGA 2 cut(s) 199, 400
AvaI CYCGRG 1 cut(s) 486
AvaII GGWCC 1 cut(s) 562
BaeGI GKGCMC 2 cut(s) 534, 622
BalI TGGCCA 1 cut(s) 519
BanI GGYRCC 2 cut(s) 341, 617
BanII GRGCYC 1 cut(s) 534
BbrPI CACGTG 1 cut(s) 470
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 602
BbvI GCAGC 2 cut(s) 293, 315
BccI CCATC 4 cut(s) 120, 184, 201, 344
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 5 cut(s) 33, 144, 204, 623, 694
BfmI CTRYAG 1 cut(s) 177
BisI GCNGC 4 cut(s) 301, 304, 307, 345
BlsI GCNGC 4 cut(s) 302, 305, 308, 346
Bme18I GGWCC 1 cut(s) 562
BmeT110I CYCGRG 1 cut(s) 486
BmgT120I GGNCC 4 cut(s) 394, 530, 531, 562
BmiI GGNNCC 7 cut(s) 343, 395, 531, 532, 563, 564, 619
BmsI GCATC 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 264
BsaAI YACGTR 2 cut(s) 470, 526
BsaHI GRCGYC 1 cut(s) 294
BsaWI WCCGGW 1 cut(s) 686
Bsc4I CCNNNNNNNGG 4 cut(s) 95, 326, 526, 627
Bse1I ACTGG 2 cut(s) 331, 520
Bse3DI GCAATG 1 cut(s) 229
BseGI GGATG 2 cut(s) 56, 131
BseLI CCNNNNNNNGG 4 cut(s) 95, 326, 526, 627
BseMI GCAATG 1 cut(s) 229
BseNI ACTGG 2 cut(s) 331, 520
BseSI GKGCMC 2 cut(s) 534, 622
BseXI GCAGC 2 cut(s) 293, 315
Bsh1236I CGCG 2 cut(s) 116, 405
BshFI GGCC 4 cut(s) 396, 519, 532, 661
BshNI GGYRCC 2 cut(s) 341, 617
BsiHKAI GWGCWC 1 cut(s) 602
BsiHKCI CYCGRG 1 cut(s) 486
BsiSI CCGG 1 cut(s) 687
BslFI GGGAC 3 cut(s) 167, 458, 575
BslI CCNNNNNNNGG 4 cut(s) 95, 326, 526, 627
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 3 cut(s) 167, 458, 575
BsnI GGCC 4 cut(s) 396, 519, 532, 661
BsoBI CYCGRG 1 cut(s) 486
Bsp120I GGGCCC 1 cut(s) 530
Bsp1286I GDGCHC 3 cut(s) 534, 602, 622
Bsp143I GATC 3 cut(s) 55, 60, 91
Bsp68I TCGCGA 1 cut(s) 116
BspACI CCGC 3 cut(s) 300, 345, 451
BspANI GGCC 4 cut(s) 396, 519, 532, 661
BspFNI CGCG 2 cut(s) 116, 405
BspLI GGNNCC 7 cut(s) 343, 395, 531, 532, 563, 564, 619
BspMAI CTGCAG 1 cut(s) 181
BspPI GGATC 1 cut(s) 68
BspT107I GGYRCC 2 cut(s) 341, 617
BsrDI GCAATG 1 cut(s) 229
BsrI ACTGG 2 cut(s) 331, 520
BssMI GATC 3 cut(s) 55, 60, 91
BssNI GRCGYC 1 cut(s) 294
Bst4CI ACNGT 3 cut(s) 187, 341, 604
Bst6I CTCTTC 2 cut(s) 377, 647
BstACI GRCGYC 1 cut(s) 294
BstBAI YACGTR 2 cut(s) 470, 526
BstC8I GCNNGC 4 cut(s) 398, 594, 598, 659
BstF5I GGATG 2 cut(s) 56, 131
BstFNI CGCG 2 cut(s) 116, 405
BstKTI GATC 3 cut(s) 58, 63, 94
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 3 cut(s) 55, 60, 91
BstMWI GCNNNNNNNGC 3 cut(s) 200, 306, 402
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 2 cut(s) 534, 622
BstUI CGCG 2 cut(s) 116, 405
BstV1I GCAGC 2 cut(s) 293, 315
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 60
BstXI CCANNNNNNTGG 1 cut(s) 657
BstYI RGATCY 1 cut(s) 60
BsuRI GGCC 4 cut(s) 396, 519, 532, 661
BtsCI GGATG 2 cut(s) 56, 131
BtsIMutI CAGTG 1 cut(s) 600
BtuMI TCGCGA 1 cut(s) 116
Cac8I GCNNGC 4 cut(s) 398, 594, 598, 659
CaiI CAGNNNCTG 1 cut(s) 224
Cfr13I GGNCC 4 cut(s) 394, 530, 531, 562
CseI GACGC 4 cut(s) 86, 223, 272, 394
Csp6I GTAC 1 cut(s) 523
CviQI GTAC 1 cut(s) 523
DpnI GATC 3 cut(s) 57, 62, 93
DpnII GATC 3 cut(s) 55, 60, 91
EaeI YGGCCR 1 cut(s) 517
Eam1104I CTCTTC 2 cut(s) 377, 647
EarI CTCTTC 2 cut(s) 377, 647
EciI GGCGGA 1 cut(s) 440
Eco24I GRGCYC 1 cut(s) 534
Eco47I GGWCC 1 cut(s) 562
Eco57I CTGAAG 1 cut(s) 663
Eco72I CACGTG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 486
EcoO109I RGGNCCY 3 cut(s) 530, 531, 562
EcoT38I GRGCYC 1 cut(s) 534
Esp3I CGTCTC 1 cut(s) 69
FaiI YATR 3 cut(s) 30, 278, 668
FaqI GGGAC 3 cut(s) 167, 458, 575
Fnu4HI GCNGC 4 cut(s) 301, 304, 307, 345
FokI GGATG 2 cut(s) 63, 138
FriOI GRGCYC 1 cut(s) 534
Fsp4HI GCNGC 4 cut(s) 301, 304, 307, 345
FspBI CTAG 5 cut(s) 33, 144, 204, 623, 694
GluI GCNGC 4 cut(s) 301, 304, 307, 345
HaeIII GGCC 4 cut(s) 396, 519, 532, 661
HapII CCGG 1 cut(s) 687
HgaI GACGC 4 cut(s) 86, 223, 272, 394
Hin1I GRCGYC 1 cut(s) 294
HinfI GANTC 2 cut(s) 85, 579
HpaII CCGG 1 cut(s) 687
HphI GGTGA 2 cut(s) 199, 400
Hpy188I TCNGA 2 cut(s) 60, 133
Hpy188III TCNNGA 3 cut(s) 89, 115, 486
Hpy99I CGWCG 5 cut(s) 25, 239, 266, 299, 341
HpyAV CCTTC 2 cut(s) 155, 672
HpyCH4III ACNGT 3 cut(s) 187, 341, 604
HpyCH4IV ACGT 3 cut(s) 294, 469, 525
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 306, 402
HpySE526I ACGT 3 cut(s) 294, 469, 525
Hsp92I GRCGYC 1 cut(s) 294
KflI GGGWCCC 1 cut(s) 562
Kzo9I GATC 3 cut(s) 55, 60, 91
LmnI GCTCC 1 cut(s) 453
Lsp1109I GCAGC 2 cut(s) 293, 315
LweI GCATC 1 cut(s) 435
MaeI CTAG 5 cut(s) 33, 144, 204, 623, 694
MaeII ACGT 3 cut(s) 294, 469, 525
MaeIII GTNAC 1 cut(s) 406
MalI GATC 3 cut(s) 57, 62, 93
MboI GATC 3 cut(s) 55, 60, 91
MboII GAAGA 3 cut(s) 269, 394, 634
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 3 cut(s) 534, 602, 622
MlsI TGGCCA 1 cut(s) 519
MluCI AATT 1 cut(s) 550
MluI ACGCGT 1 cut(s) 403
MluNI TGGCCA 1 cut(s) 519
MmeI TCCRAC 3 cut(s) 111, 416, 586
Mox20I TGGCCA 1 cut(s) 519
MscI TGGCCA 1 cut(s) 519
MseI TTAA 1 cut(s) 573
Msp20I TGGCCA 1 cut(s) 519
MspA1I CMGCKG 2 cut(s) 306, 347
MspI CCGG 1 cut(s) 687
MvnI CGCG 2 cut(s) 116, 405
MwoI GCNNNNNNNGC 3 cut(s) 200, 306, 402
NdeII GATC 3 cut(s) 55, 60, 91
NlaIV GGNNCC 7 cut(s) 343, 395, 531, 532, 563, 564, 619
NmuCI GTSAC 1 cut(s) 406
NruI TCGCGA 1 cut(s) 116
PfeI GAWTC 2 cut(s) 85, 579
PflMI CCANNNNNTGG 1 cut(s) 526
PkrI GCNGC 4 cut(s) 302, 305, 308, 346
PmaCI CACGTG 1 cut(s) 470
PmlI CACGTG 1 cut(s) 470
Ppu21I YACGTR 2 cut(s) 470, 526
PpuMI RGGWCCY 1 cut(s) 562
Psp5II RGGWCCY 1 cut(s) 562
PspCI CACGTG 1 cut(s) 470
PspN4I GGNNCC 7 cut(s) 343, 395, 531, 532, 563, 564, 619
PspOMI GGGCCC 1 cut(s) 530
PspPI GGNCC 4 cut(s) 394, 530, 531, 562
PspPPI RGGWCCY 1 cut(s) 562
PstI CTGCAG 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 224
PsuI RGATCY 1 cut(s) 60
PvuII CAGCTG 1 cut(s) 306
RruI TCGCGA 1 cut(s) 116
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 4 cut(s) 301, 304, 307, 345
Sau3AI GATC 3 cut(s) 55, 60, 91
Sau96I GGNCC 4 cut(s) 394, 530, 531, 562
SduI GDGCHC 3 cut(s) 534, 602, 622
SfaNI GCATC 1 cut(s) 435
SfcI CTRYAG 1 cut(s) 177
SinI GGWCC 1 cut(s) 562
Sse9I AATT 1 cut(s) 550
SsiI CCGC 3 cut(s) 300, 345, 451
SspMI CTAG 5 cut(s) 33, 144, 204, 623, 694
TaaI ACNGT 3 cut(s) 187, 341, 604
TaiI ACGT 3 cut(s) 297, 472, 528
TaqI TCGA 3 cut(s) 15, 237, 323
TasI AATT 1 cut(s) 550
TauI GCSGC 2 cut(s) 303, 347
TfiI GAWTC 2 cut(s) 85, 579
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 1 cut(s) 607
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 2 cut(s) 303, 306
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 2 cut(s) 157, 406
TspRI CASTG 1 cut(s) 607
Van91I CCANNNNNTGG 1 cut(s) 526
VpaK11BI GGWCC 1 cut(s) 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 432
XspI CTAG 5 cut(s) 33, 144, 204, 623, 694
ZraI GACGTC 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.