FvH4_3g43021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000442
Physical Location & Seq
Forward (+)
35937300 .. 35938107
808 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43021.t1

Sequence Viewer

Length: 618 bp
ATGGATGTCATTGAAAATATCCGTTCAAGGAAAGCGAATGGCATCCATGGTGGATCTCTAGCTTTATATGACATTCAAGTGATCGGTTCTAGAGCTACACTTCCTCAAAATATTTACCAGCCCACGGTGCACAAGGATTATATTGAGGGCTATAAAGATTTTTTTGACGATTTATTTGGAGGCAATGACGAACCATTGGACGACGTGTATTACATGGACCTCAAATCATATATGAAGAATCTGGAGACAATCGAACAATTGTTATTGTTGCTTCGACACCCTTACTTTCAGACAGTGGCTGAAGCTTTGAGATTCATTTCATCGGTGGTTAAAATACTTGATGACTTGGGTGCAAGGTTTCCAGATCCAATGAAAACAGCAGACAATGGTTATCAATACGCTTGGCACCGTGAGAACAACTATAAGGCTACCGATGGTGTACATGAGCTGTACTTTTATGCAACAGTGTGCAAACAGATGAATCACGTAAATGAAAAAGTTAGAGCCTTGCGTGAGGGGTTTACAAATGTGCCCATAAAAGCATTCAAGGTTTTCTGGACCTACCCAGGATATTACGACGGGCGTATCAACTTGGATTTTGTTAGACCTCTGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.92

Weight (kDa)

6.07

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 405
AclWI GGATC 2 cut(s) 61, 359
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 2 cut(s) 441, 452
AfiI CCNNNNNNNGG 1 cut(s) 124
AflIII ACRYGT 1 cut(s) 204
AgsI TTSAA 4 cut(s) 14, 27, 77, 547
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 1 cut(s) 565
AluBI AGCT 4 cut(s) 62, 95, 305, 448
AluI AGCT 4 cut(s) 62, 95, 305, 448
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 239
Alw44I GTGCAC 1 cut(s) 128
AlwI GGATC 2 cut(s) 61, 359
AlwNI CAGNNNCTG 1 cut(s) 299
ApaLI GTGCAC 1 cut(s) 128
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AspS9I GGNCC 2 cut(s) 217, 558
AvaII GGWCC 2 cut(s) 217, 558
BaeGI GKGCMC 2 cut(s) 132, 534
BaeI ACNNNNGTAYC 2 cut(s) 568, 601
BanI GGYRCC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 132
BccI CCATC 1 cut(s) 428
BciT130I CCWGG 1 cut(s) 567
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 2 cut(s) 59, 90
Bme1390I CCNGG 1 cut(s) 567
Bme18I GGWCC 2 cut(s) 217, 558
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 2 cut(s) 217, 558
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 1 cut(s) 567
BmsI GCATC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 487
BsaJI CCNNGG 3 cut(s) 46, 123, 565
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 567
BseDI CCNNGG 3 cut(s) 46, 123, 565
BseGI GGATG 2 cut(s) 10, 42
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 602
BseSI GKGCMC 2 cut(s) 132, 534
BshNI GGYRCC 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 239
BsmI GAATGC 1 cut(s) 542
Bsp1286I GDGCHC 2 cut(s) 132, 534
Bsp1407I TGTACA 1 cut(s) 439
Bsp143I GATC 3 cut(s) 53, 81, 364
Bsp19I CCATGG 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 603
BspLI GGNNCC 1 cut(s) 407
BspPI GGATC 2 cut(s) 61, 359
BspT107I GGYRCC 1 cut(s) 405
BsrDI GCAATG 1 cut(s) 190
BsrGI TGTACA 1 cut(s) 439
BssECI CCNNGG 3 cut(s) 46, 123, 565
BssMI GATC 3 cut(s) 53, 81, 364
BssT1I CCWWGG 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 567
Bst4CI ACNGT 4 cut(s) 127, 295, 410, 466
BstAUI TGTACA 1 cut(s) 439
BstBAI YACGTR 1 cut(s) 487
BstDEI CTNAG 1 cut(s) 611
BstDSI CCRYGG 2 cut(s) 46, 123
BstF5I GGATG 2 cut(s) 10, 42
BstKTI GATC 3 cut(s) 56, 84, 367
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 3 cut(s) 53, 81, 364
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstNI CCWGG 1 cut(s) 567
BstSCI CCNGG 1 cut(s) 565
BstSLI GKGCMC 2 cut(s) 132, 534
BstX2I RGATCY 2 cut(s) 53, 364
BstYI RGATCY 2 cut(s) 53, 364
BtgI CCRYGG 2 cut(s) 46, 123
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 2 cut(s) 10, 42
BtsIMutI CAGTG 2 cut(s) 300, 471
CaiI CAGNNNCTG 1 cut(s) 299
Cfr13I GGNCC 2 cut(s) 217, 558
Csp6I GTAC 2 cut(s) 440, 451
CviAII CATG 3 cut(s) 47, 214, 443
CviJI RGCY 9 cut(s) 62, 95, 121, 150, 299, 305, 428, 448, 506
CviKI_1 RGCY 9 cut(s) 62, 95, 121, 150, 299, 305, 428, 448, 506
CviQI GTAC 2 cut(s) 440, 451
DdeI CTNAG 1 cut(s) 611
DpnI GATC 3 cut(s) 55, 83, 366
DpnII GATC 3 cut(s) 53, 81, 364
Eco130I CCWWGG 1 cut(s) 46
Eco47I GGWCC 2 cut(s) 217, 558
Eco57I CTGAAG 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 565
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 3 cut(s) 50, 217, 446
FatI CATG 3 cut(s) 46, 213, 442
FokI GGATG 2 cut(s) 17, 29
FspBI CTAG 2 cut(s) 59, 90
GsuI CTGGAG 1 cut(s) 263
Hin1II CATG 3 cut(s) 50, 217, 446
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 3 cut(s) 238, 312, 481
Hpy166II GTNNAC 3 cut(s) 130, 440, 522
Hpy188I TCNGA 2 cut(s) 291, 612
Hpy188III TCNNGA 4 cut(s) 90, 242, 362, 556
Hpy8I GTNNAC 3 cut(s) 130, 440, 522
Hpy99I CGWCG 2 cut(s) 206, 581
HpyCH4III ACNGT 4 cut(s) 127, 295, 410, 466
HpyCH4IV ACGT 2 cut(s) 204, 486
HpyCH4V TGCA 4 cut(s) 130, 353, 461, 471
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 1 cut(s) 611
HpySE526I ACGT 2 cut(s) 204, 486
Hsp92II CATG 3 cut(s) 50, 217, 446
Kzo9I GATC 3 cut(s) 53, 81, 364
LpnPI CCDG 6 cut(s) 131, 227, 375, 541, 552, 579
LweI GCATC 1 cut(s) 51
MaeI CTAG 2 cut(s) 59, 90
MaeII ACGT 2 cut(s) 204, 486
MalI GATC 3 cut(s) 55, 83, 366
MboI GATC 3 cut(s) 53, 81, 364
MboII GAAGA 1 cut(s) 247
MfeI CAATTG 1 cut(s) 257
MflI RGATCY 2 cut(s) 53, 364
MhlI GDGCHC 2 cut(s) 132, 534
MluCI AATT 1 cut(s) 257
MnlI CCTC 7 cut(s) 114, 139, 173, 230, 508, 606, 618
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 2 cut(s) 77, 489
MspR9I CCNGG 1 cut(s) 567
MunI CAATTG 1 cut(s) 257
Mva1269I GAATGC 1 cut(s) 542
MvaI CCWGG 1 cut(s) 567
MwoI GCNNNNNNNGC 1 cut(s) 127
NcoI CCATGG 1 cut(s) 46
NdeII GATC 3 cut(s) 53, 81, 364
NlaIII CATG 3 cut(s) 50, 217, 446
NlaIV GGNNCC 1 cut(s) 407
PctI GAATGC 1 cut(s) 542
PfeI GAWTC 3 cut(s) 238, 312, 481
Ppu21I YACGTR 1 cut(s) 487
Psp6I CCWGG 1 cut(s) 565
PspGI CCWGG 1 cut(s) 565
PspN4I GGNNCC 1 cut(s) 407
PspPI GGNCC 2 cut(s) 217, 558
PstNI CAGNNNCTG 1 cut(s) 299
PsuI RGATCY 2 cut(s) 53, 364
RsaI GTAC 2 cut(s) 441, 452
RsaNI GTAC 2 cut(s) 440, 451
RseI CAYNNNNRTG 2 cut(s) 77, 489
SaqAI TTAA 1 cut(s) 330
Sau3AI GATC 3 cut(s) 53, 81, 364
Sau96I GGNCC 2 cut(s) 217, 558
ScrFI CCNGG 1 cut(s) 567
SduI GDGCHC 2 cut(s) 132, 534
SfaNI GCATC 1 cut(s) 51
SinI GGWCC 2 cut(s) 217, 558
SmiMI CAYNNNNRTG 2 cut(s) 77, 489
Sse9I AATT 1 cut(s) 257
SspI AATATT 1 cut(s) 112
SspMI CTAG 2 cut(s) 59, 90
StyD4I CCNGG 1 cut(s) 565
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 4 cut(s) 127, 295, 410, 466
TaiI ACGT 2 cut(s) 207, 489
TaqI TCGA 2 cut(s) 252, 274
TasI AATT 1 cut(s) 257
TatI WGTACW 2 cut(s) 439, 450
TfiI GAWTC 3 cut(s) 238, 312, 481
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 2 cut(s) 300, 471
TspDTI ATGAA 6 cut(s) 248, 304, 309, 386, 494, 507
TspGWI ACGGA 1 cut(s) 11
TspRI CASTG 2 cut(s) 300, 471
VneI GTGCAC 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 217, 558
XbaI TCTAGA 1 cut(s) 89
XspI CTAG 2 cut(s) 59, 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.