Rmu_sc0000888.1_g000012

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000888.1
OG0000442
Physical Location & Seq
Forward (+)
50482 .. 50946
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000888.1_g000012.1.cds

Sequence Viewer

Length: 282 bp
atggcagcagagaataccagtaaagtctttgaagcacatcctatgaaaggtggagatggccccaatagctatacaaaaaactccattctgcagagagcttctgtcgatgctgccaaagaacttctgaacaaggcaattgcagaaaagctggacatcaaaagtttcttaccttccaagtcttttcgcattgcagatctgggttgctctactggaccaaatacttttacggcagttggaaacatacttgaagctgtggatccaagtatcgaagccaagggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

93

Amino Acids

9.8

Weight (kDa)

6.56

Isoelectric Point (pI)

23.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 251, 264
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 2 cut(s) 32, 248
AluBI AGCT 4 cut(s) 69, 98, 148, 251
AluI AGCT 4 cut(s) 69, 98, 148, 251
AlwI GGATC 2 cut(s) 251, 264
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 2 cut(s) 5, 110
AspS9I GGNCC 2 cut(s) 59, 212
AvaII GGWCC 1 cut(s) 212
BamHI GGATCC 1 cut(s) 256
BbvI GCAGC 2 cut(s) 17, 97
BccI CCATC 1 cut(s) 50
BceAI ACGGC 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 89
BglII AGATCT 1 cut(s) 193
BisI GCNGC 2 cut(s) 6, 111
BlsI GCNGC 2 cut(s) 7, 112
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 2 cut(s) 59, 212
BmiI GGNNCC 2 cut(s) 61, 258
BmsI GCATC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 2 cut(s) 18, 214
Bse3DI GCAATG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 186
BseNI ACTGG 2 cut(s) 18, 214
BseXI GCAGC 2 cut(s) 17, 97
BshFI GGCC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 47
BsnI GGCC 1 cut(s) 60
Bsp143I GATC 2 cut(s) 193, 256
BspANI GGCC 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 61, 258
BspMAI CTGCAG 1 cut(s) 93
BspPI GGATC 2 cut(s) 251, 264
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 2 cut(s) 18, 214
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 2 cut(s) 193, 256
BssT1I CCWWGG 1 cut(s) 273
BstENI CCTNNNNNAGG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 2 cut(s) 196, 259
BstMBI GATC 2 cut(s) 193, 256
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 89
BstV1I GCAGC 2 cut(s) 17, 97
BstX2I RGATCY 2 cut(s) 193, 256
BstYI RGATCY 2 cut(s) 193, 256
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 59, 212
CviJI RGCY 7 cut(s) 60, 69, 98, 148, 251, 272, 279
CviKI_1 RGCY 7 cut(s) 60, 69, 98, 148, 251, 272, 279
DpnI GATC 2 cut(s) 195, 258
DpnII GATC 2 cut(s) 193, 256
Eco130I CCWWGG 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaiI YATR 3 cut(s) 44, 72, 242
Fnu4HI GCNGC 2 cut(s) 6, 111
FokI GGATG 1 cut(s) 24
Fsp4HI GCNGC 2 cut(s) 6, 111
GluI GCNGC 2 cut(s) 6, 111
HaeIII GGCC 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 180
HpyCH4V TGCA 3 cut(s) 91, 140, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
Kzo9I GATC 2 cut(s) 193, 256
LpnPI CCDG 4 cut(s) 31, 134, 182, 195
Lsp1109I GCAGC 2 cut(s) 17, 97
LweI GCATC 1 cut(s) 97
MalI GATC 2 cut(s) 195, 258
MboI GATC 2 cut(s) 193, 256
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 2 cut(s) 193, 256
MluCI AATT 1 cut(s) 135
MmeI TCCRAC 1 cut(s) 214
MunI CAATTG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 66
NdeII GATC 2 cut(s) 193, 256
NlaIV GGNNCC 2 cut(s) 61, 258
PkrI GCNGC 2 cut(s) 7, 112
PspN4I GGNNCC 2 cut(s) 61, 258
PspPI GGNCC 2 cut(s) 59, 212
PstI CTGCAG 1 cut(s) 93
PsuI RGATCY 2 cut(s) 193, 256
SatI GCNGC 2 cut(s) 6, 111
Sau3AI GATC 2 cut(s) 193, 256
Sau96I GGNCC 2 cut(s) 59, 212
SetI ASST 6 cut(s) 52, 71, 100, 150, 172, 253
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 1 cut(s) 89
SgeI CNNG 8 cut(s) 30, 142, 161, 187, 209, 222, 257, 273
SinI GGWCC 1 cut(s) 212
Sse9I AATT 1 cut(s) 135
StyI CCWWGG 1 cut(s) 273
TaqI TCGA 2 cut(s) 105, 267
TasI AATT 1 cut(s) 135
TseI GCWGC 2 cut(s) 5, 110
TspDTI ATGAA 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 212
XagI CCTNNNNNAGG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.