Rmu_sc0002026.1_g000021

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002026.1
OG0000442
Physical Location & Seq
Forward (+)
100204 .. 104869
4666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002026.1_g000021.1.cds

Sequence Viewer

Length: 1260 bp
atgtattccatctgcccccaagaactcgaagcagttgtcaaacaaaatggatcttttagcatagagacattggaaacaatacctcatgttttagctgatgatgctgtcttaaatgcaaaacaacttgcagctcatggaagagccgtcttggagggactcatcaaacaacaatttggaaaagaaatcacagatgagctcttcgacttgtatggcaagaaaatggagaaagaactctccatttttaagcaaaggaagagaactaactttcttgtccagcagcccaagaggcggagctgcaaaccccaactgagcccgccgcaattgttaaaaaaccaagcccgccgcaatttccaaaacgccatcgccgctcgccaagaagcctttctcaccttctgcttcccgatcccggctcaaaaaagcaccttgctttgttctctagagtggtgtctattcttattctgggacagaacattagagaggcggaggctggagcaaacccgagcaagaatagtttgggtgctccgatttgaggaaggaaaggcggtggaaggtgaattgattgggtttggagcagccatatggagaggggtgattgggaggggtggtggtgcttgccggcgtgacggggatgatggatggatggatggtgggatggctagcatttctcgaagcggtaggtatgccggcagtggtggaaccgcgagctccgcctcttgggctgctgctgcggctgcttcttctttggagcagaaggagaggggagagagagagagagagagagagaatgaggaaagagagctgaagaagaagagtgatgtcgatatgacgaactgtgctggtggttggcatgcgcagagtggtgggttgattcacatatctactggcagtgatgattgcggcggcttctgtgccgacggcgtcaatttgggttgggctaccgatggtgtggatcctgatcttggtggcggcgctgggagttcgtccattgtcatggttcgacggggaagcatttctctcagcgatcaggttagatggcgagcgtcggtatccgaattggcagggaagacgacgttgacccgtttgtgttgggcagtaatgaagtcggcagtgactgcggggtgtttccctcgactagcgtcagcgacggcgcaactggtggttgttggctggaaggatacttgtgggctcattaggttagggctttggtttaccctactatttgggcctgctctgggtgttgctgggtctcctgggccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

419

Amino Acids

45.59

Weight (kDa)

8.89

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 852
AccBSI CCGCTC 1 cut(s) 368
AccII CGCG 1 cut(s) 701
AclWI GGATC 4 cut(s) 58, 397, 944, 957
AcuI CTGAAG 1 cut(s) 821
AcyI GRCGYC 1 cut(s) 918
AfiI CCNNNNNNNGG 6 cut(s) 288, 406, 529, 714, 959, 1232
AjnI CCWGG 1 cut(s) 1249
AjuI GAANNNNNNNTTGG 2 cut(s) 366, 398
AluBI AGCT 6 cut(s) 95, 131, 196, 294, 705, 799
AluI AGCT 6 cut(s) 95, 131, 196, 294, 705, 799
Alw21I GWGCWC 3 cut(s) 198, 522, 707
Alw26I GTCTC 2 cut(s) 59, 1251
AlwI GGATC 4 cut(s) 58, 397, 944, 957
AlwNI CAGNNNCTG 1 cut(s) 1112
Ama87I CYCGRG 1 cut(s) 498
AoxI GGCC 2 cut(s) 1223, 1253
ApeKI GCWGC 8 cut(s) 128, 277, 294, 572, 719, 722, 725, 731
ArsI GACNNNNNNTTYG 2 cut(s) 21, 53
Asp700I GAANNNNTTC 2 cut(s) 381, 1009
AspLEI GCGC 3 cut(s) 853, 971, 1150
AspS9I GGNCC 2 cut(s) 1223, 1253
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 3 cut(s) 379, 563, 601
AsuNHI GCTAGC 1 cut(s) 656
AvaI CYCGRG 1 cut(s) 498
BamHI GGATCC 1 cut(s) 949
BanII GRGCYC 4 cut(s) 198, 314, 707, 1188
BbsI GAAGAC 1 cut(s) 1070
Bbv12I GWGCWC 3 cut(s) 198, 522, 707
BbvI GCAGC 8 cut(s) 140, 281, 289, 584, 706, 709, 712, 718
BccI CCATC 9 cut(s) 17, 368, 626, 630, 634, 638, 646, 935, 1026
BceAI ACGGC 3 cut(s) 128, 931, 1161
BciT130I CCWGG 1 cut(s) 1251
BciVI GTATCC 2 cut(s) 1057, 1168
BcnI CCSGG 1 cut(s) 407
BcoDI GTCTC 2 cut(s) 59, 1251
BfaI CTAG 3 cut(s) 437, 657, 1133
BfoI RGCGCY 1 cut(s) 972
BfuI GTATCC 2 cut(s) 1057, 1168
BglI GCCNNNNNGGC 2 cut(s) 286, 716
Bme1390I CCNGG 2 cut(s) 407, 1251
BmeT110I CYCGRG 1 cut(s) 498
BmgT120I GGNCC 2 cut(s) 1223, 1253
BmiI GGNNCC 2 cut(s) 697, 951
BmrFI CCNGG 2 cut(s) 407, 1251
BmsI GCATC 1 cut(s) 91
BmtI GCTAGC 1 cut(s) 660
BoxI GACNNNNGTC 1 cut(s) 1135
BpiI GAAGAC 1 cut(s) 1070
BpmI CTGGAG 1 cut(s) 509
BpuMI CCSGG 1 cut(s) 407
BsaBI GATNNNNATC 1 cut(s) 954
BsaHI GRCGYC 1 cut(s) 918
BsaI GGTCTC 1 cut(s) 1251
BsaJI CCNNGG 1 cut(s) 1250
BsaXI ACNNNNNCTCC 2 cut(s) 589, 619
Bsc4I CCNNNNNNNGG 6 cut(s) 288, 406, 529, 714, 959, 1232
Bse118I RCCGGY 2 cut(s) 615, 683
Bse1I ACTGG 2 cut(s) 886, 1158
Bse8I GATNNNNATC 1 cut(s) 954
BseBI CCWGG 1 cut(s) 1251
BseDI CCNNGG 1 cut(s) 1250
BseGI GGATG 5 cut(s) 634, 641, 645, 649, 657
BseJI GATNNNNATC 1 cut(s) 954
BseLI CCNNNNNNNGG 6 cut(s) 288, 406, 529, 714, 959, 1232
BseMII CTCAG 2 cut(s) 299, 1030
BseNI ACTGG 2 cut(s) 886, 1158
BseXI GCAGC 8 cut(s) 140, 281, 289, 584, 706, 709, 712, 718
BseYI CCCAGC 2 cut(s) 971, 1241
Bsh1236I CGCG 1 cut(s) 701
BshFI GGCC 2 cut(s) 1225, 1255
BsiHKAI GWGCWC 3 cut(s) 198, 522, 707
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 3 cut(s) 407, 616, 684
BslFI GGGAC 2 cut(s) 168, 476
BslI CCNNNNNNNGG 6 cut(s) 288, 406, 529, 714, 959, 1232
BsmAI GTCTC 2 cut(s) 59, 1251
BsmFI GGGAC 2 cut(s) 168, 476
BsnI GGCC 2 cut(s) 1225, 1255
Bso31I GGTCTC 1 cut(s) 1251
BsoBI CYCGRG 1 cut(s) 498
Bsp1286I GDGCHC 5 cut(s) 198, 314, 522, 707, 1188
Bsp143I GATC 5 cut(s) 50, 402, 949, 955, 1021
BspANI GGCC 2 cut(s) 1225, 1255
BspCNI CTCAG 2 cut(s) 300, 1029
BspFNI CGCG 1 cut(s) 701
BspLI GGNNCC 2 cut(s) 697, 951
BspOI GCTAGC 1 cut(s) 660
BspPI GGATC 4 cut(s) 58, 397, 944, 957
BspQI GCTCTTC 2 cut(s) 133, 203
BspTNI GGTCTC 1 cut(s) 1251
BsrBI CCGCTC 1 cut(s) 368
BsrFI RCCGGY 2 cut(s) 615, 683
BsrI ACTGG 2 cut(s) 886, 1158
BssAI RCCGGY 2 cut(s) 615, 683
BssECI CCNNGG 1 cut(s) 1250
BssMI GATC 5 cut(s) 50, 402, 949, 955, 1021
BssNI GRCGYC 1 cut(s) 918
Bst2UI CCWGG 1 cut(s) 1251
Bst4CI ACNGT 1 cut(s) 833
Bst6I CTCTTC 4 cut(s) 133, 203, 248, 803
BstACI GRCGYC 1 cut(s) 918
BstAPI GCANNNNNTGC 1 cut(s) 1112
BstDEI CTNAG 2 cut(s) 308, 1016
BstF5I GGATG 5 cut(s) 634, 641, 645, 649, 657
BstFNI CGCG 1 cut(s) 701
BstH2I RGCGCY 1 cut(s) 972
BstHHI GCGC 3 cut(s) 853, 971, 1150
BstKTI GATC 5 cut(s) 53, 405, 952, 958, 1024
BstMAI GTCTC 2 cut(s) 59, 1251
BstMBI GATC 5 cut(s) 50, 402, 949, 955, 1021
BstMWI GCNNNNNNNGC 9 cut(s) 101, 286, 365, 707, 716, 725, 728, 731, 1112
BstNI CCWGG 1 cut(s) 1251
BstNSI RCATGY 1 cut(s) 851
BstPAI GACNNNNGTC 1 cut(s) 1135
BstSCI CCNGG 2 cut(s) 405, 1249
BstUI CGCG 1 cut(s) 701
BstV1I GCAGC 8 cut(s) 140, 281, 289, 584, 706, 709, 712, 718
BstV2I GAAGAC 1 cut(s) 1070
BstX2I RGATCY 2 cut(s) 50, 949
BstXI CCANNNNNNTGG 1 cut(s) 991
BstYI RGATCY 2 cut(s) 50, 949
BsuI GTATCC 2 cut(s) 1057, 1168
BsuRI GGCC 2 cut(s) 1225, 1255
BtgZI GCGATG 1 cut(s) 346
BtsCI GGATG 5 cut(s) 634, 641, 645, 649, 657
BtsI GCAGTG 3 cut(s) 694, 892, 1113
BtsIMutI CAGTG 3 cut(s) 694, 892, 1113
CaiI CAGNNNCTG 1 cut(s) 1112
CfoI GCGC 3 cut(s) 853, 971, 1150
Cfr10I RCCGGY 2 cut(s) 615, 683
Cfr13I GGNCC 2 cut(s) 1223, 1253
CseI GACGC 3 cut(s) 907, 1029, 1125
CviAII CATG 4 cut(s) 86, 134, 848, 991
DdeI CTNAG 2 cut(s) 308, 1016
DpnI GATC 5 cut(s) 52, 404, 951, 957, 1023
DpnII GATC 5 cut(s) 50, 402, 949, 955, 1021
Eam1104I CTCTTC 4 cut(s) 133, 203, 248, 803
EarI CTCTTC 4 cut(s) 133, 203, 248, 803
EciI GGCGGA 3 cut(s) 304, 496, 697
Ecl136II GAGCTC 2 cut(s) 196, 705
Eco24I GRGCYC 4 cut(s) 198, 314, 707, 1188
Eco31I GGTCTC 1 cut(s) 1251
Eco53kI GAGCTC 2 cut(s) 196, 705
Eco57I CTGAAG 1 cut(s) 821
Eco88I CYCGRG 1 cut(s) 498
EcoICRI GAGCTC 2 cut(s) 196, 705
EcoRII CCWGG 1 cut(s) 1249
EcoT38I GRGCYC 4 cut(s) 198, 314, 707, 1188
FaeI CATG 4 cut(s) 89, 137, 851, 994
FaqI GGGAC 2 cut(s) 168, 476
FatI CATG 4 cut(s) 85, 133, 847, 990
FauI CCCGC 3 cut(s) 321, 347, 1108
FauNDI CATATG 1 cut(s) 578
FokI GGATG 5 cut(s) 641, 648, 652, 656, 664
FriOI GRGCYC 4 cut(s) 198, 314, 707, 1188
FspBI CTAG 3 cut(s) 437, 657, 1133
FspI TGCGCA 1 cut(s) 852
GlaI GCGC 3 cut(s) 852, 970, 1149
GsaI CCCAGC 2 cut(s) 975, 1245
GsuI CTGGAG 1 cut(s) 509
HaeII RGCGCY 1 cut(s) 972
HaeIII GGCC 2 cut(s) 1225, 1255
HapII CCGG 3 cut(s) 407, 616, 684
HgaI GACGC 3 cut(s) 907, 1029, 1125
HhaI GCGC 3 cut(s) 853, 971, 1150
Hin1I GRCGYC 1 cut(s) 918
Hin1II CATG 4 cut(s) 89, 137, 851, 994
Hin6I GCGC 3 cut(s) 851, 969, 1148
HinP1I GCGC 3 cut(s) 851, 969, 1148
HincII GTYRAC 1 cut(s) 1074
HindII GTYRAC 1 cut(s) 1074
HinfI GANTC 2 cut(s) 156, 868
HpaII CCGG 3 cut(s) 407, 616, 684
HphI GGTGA 3 cut(s) 379, 563, 601
Hpy166II GTNNAC 2 cut(s) 1074, 1209
Hpy188I TCNGA 2 cut(s) 524, 1051
Hpy188III TCNNGA 4 cut(s) 400, 437, 666, 953
Hpy8I GTNNAC 2 cut(s) 1074, 1209
Hpy99I CGWCG 5 cut(s) 917, 1002, 1045, 1072, 1147
HpyAV CCTTC 5 cut(s) 400, 527, 542, 745, 1165
HpyCH4III ACNGT 1 cut(s) 833
HpyCH4IV ACGT 1 cut(s) 1070
HpyCH4V TGCA 3 cut(s) 116, 128, 297
HpyF10VI GCNNNNNNNGC 9 cut(s) 101, 286, 365, 707, 716, 725, 728, 731, 1112
HpyF3I CTNAG 2 cut(s) 308, 1016
HpySE526I ACGT 1 cut(s) 1070
Hsp92I GRCGYC 1 cut(s) 918
Hsp92II CATG 4 cut(s) 89, 137, 851, 994
HspAI GCGC 3 cut(s) 851, 969, 1148
KroI GCCGGC 2 cut(s) 615, 683
KroNI GCCGGC 2 cut(s) 617, 685
Kzo9I GATC 5 cut(s) 50, 402, 949, 955, 1021
LguI GCTCTTC 2 cut(s) 133, 203
LmnI GCTCC 6 cut(s) 291, 490, 525, 569, 710, 745
Lsp1109I GCAGC 8 cut(s) 140, 281, 289, 584, 706, 709, 712, 718
LweI GCATC 1 cut(s) 91
MaeI CTAG 3 cut(s) 437, 657, 1133
MaeII ACGT 1 cut(s) 1070
MaeIII GTNAC 2 cut(s) 620, 1108
MalI GATC 5 cut(s) 52, 404, 951, 957, 1023
MbiI CCGCTC 1 cut(s) 368
MboI GATC 5 cut(s) 50, 402, 949, 955, 1021
MboII GAAGA 8 cut(s) 150, 190, 265, 729, 814, 817, 820, 1075
MfeI CAATTG 1 cut(s) 320
MflI RGATCY 2 cut(s) 50, 949
MhlI GDGCHC 5 cut(s) 198, 314, 522, 707, 1188
MluCI AATT 6 cut(s) 170, 320, 346, 554, 922, 1052
MlyI GAGTC 1 cut(s) 150
MroNI GCCGGC 2 cut(s) 615, 683
MroXI GAANNNNTTC 2 cut(s) 381, 1009
MseI TTAA 3 cut(s) 110, 243, 326
MslI CAYNNNNRTG 1 cut(s) 989
MspI CCGG 3 cut(s) 407, 616, 684
MspR9I CCNGG 2 cut(s) 407, 1251
MunI CAATTG 1 cut(s) 320
MvaI CCWGG 1 cut(s) 1251
MvnI CGCG 1 cut(s) 701
MwoI GCNNNNNNNGC 9 cut(s) 101, 286, 365, 707, 716, 725, 728, 731, 1112
NaeI GCCGGC 2 cut(s) 617, 685
NciI CCSGG 1 cut(s) 407
NdeI CATATG 1 cut(s) 578
NdeII GATC 5 cut(s) 50, 402, 949, 955, 1021
NgoMIV GCCGGC 2 cut(s) 615, 683
NheI GCTAGC 1 cut(s) 656
NlaIII CATG 4 cut(s) 89, 137, 851, 994
NlaIV GGNNCC 2 cut(s) 697, 951
NmuCI GTSAC 2 cut(s) 620, 1108
NsbI TGCGCA 1 cut(s) 852
NspI RCATGY 1 cut(s) 851
PaeI GCATGC 1 cut(s) 851
PciSI GCTCTTC 2 cut(s) 133, 203
PdiI GCCGGC 2 cut(s) 617, 685
PdmI GAANNNNTTC 2 cut(s) 381, 1009
PfeI GAWTC 1 cut(s) 868
PflFI GACNNNGTC 1 cut(s) 917
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
PshAI GACNNNNGTC 1 cut(s) 1135
Psp124BI GAGCTC 2 cut(s) 198, 707
Psp6I CCWGG 1 cut(s) 1249
PspFI CCCAGC 2 cut(s) 971, 1241
PspGI CCWGG 1 cut(s) 1249
PspN4I GGNNCC 2 cut(s) 697, 951
PspPI GGNCC 2 cut(s) 1223, 1253
PstNI CAGNNNCTG 1 cut(s) 1112
PsuI RGATCY 2 cut(s) 50, 949
PsyI GACNNNGTC 1 cut(s) 917
RseI CAYNNNNRTG 1 cut(s) 989
SacI GAGCTC 2 cut(s) 198, 707
SapI GCTCTTC 2 cut(s) 133, 203
SaqAI TTAA 3 cut(s) 110, 243, 326
Sau3AI GATC 5 cut(s) 50, 402, 949, 955, 1021
Sau96I GGNCC 2 cut(s) 1223, 1253
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 2 cut(s) 407, 1251
SduI GDGCHC 5 cut(s) 198, 314, 522, 707, 1188
SfaNI GCATC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 989
SphI GCATGC 1 cut(s) 851
Sse9I AATT 6 cut(s) 170, 320, 346, 554, 922, 1052
SspMI CTAG 3 cut(s) 437, 657, 1133
SstI GAGCTC 2 cut(s) 198, 707
StyD4I CCNGG 2 cut(s) 405, 1249
TaaI ACNGT 1 cut(s) 833
TaiI ACGT 1 cut(s) 1073
TaqI TCGA 6 cut(s) 27, 201, 667, 819, 997, 1129
TasI AATT 6 cut(s) 170, 320, 346, 554, 922, 1052
TauI GCSGC 7 cut(s) 319, 345, 368, 731, 900, 903, 969
TfiI GAWTC 1 cut(s) 868
Tru1I TTAA 3 cut(s) 110, 243, 326
Tru9I TTAA 3 cut(s) 110, 243, 326
TscAI CASTG 3 cut(s) 694, 892, 1113
TseFI GTSAC 2 cut(s) 620, 1108
TseI GCWGC 8 cut(s) 128, 277, 294, 572, 719, 722, 725, 731
Tsp45I GTSAC 2 cut(s) 620, 1108
TspDTI ATGAA 1 cut(s) 1112
TspRI CASTG 3 cut(s) 694, 892, 1113
Tth111I GACNNNGTC 1 cut(s) 917
XbaI TCTAGA 1 cut(s) 436
XceI RCATGY 1 cut(s) 851
XmnI GAANNNNTTC 2 cut(s) 381, 1009
XspI CTAG 3 cut(s) 437, 657, 1133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.