Rh1AG323200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000442
Physical Location & Seq
Reverse (-)
55703421 .. 55704586
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG323200.1

Sequence Viewer

Length: 630 bp
ATGGTCTCTCTCGAGAGAGAGAAATATCGCCGGTCTCTTTCTTTGGAGAGAGGCGGCGACAACCCTACTCGTCTGCTTCTCTCCTTGGGTTGCAACGGCGACAAATCTTCTCGTCAGACTCTATCTTCTGTTAGAGGCTGCGTGTTTGCTGTATTTGATGGTGATTGGGGTCTAGCTAAGCGGATCTGTTTTGGTGGAAAGTTTCCAATGGGTAGTGATGTAGATCCGACGAACTGCGTTGGACGTTGGCATGTGCAGAGCGGTGGACTGATTCCCATCTCTGTTGGCGGTGATGAGGTTTGGGTTACCGACGGAGTGGTGCGCTGCCCAGATGACTTTGCTGGATCCCGATGGGCCTTAGATCGGGGATGCGACTGGAACTGGTTTTGTGGAGATGTACAGGATCCTGATCTTGGTGGCGGCGCTGGGTTCGCGAGTCTGGGATGGTCGGAGATGGCAAAGTCTGTCCATTGTCATGGTTTAGAAGGAAAGGTTCTCTTTCCACGATCAAGCTGGATGGCGTGCGTCGGTGTCCGATGTGGTAGGGAAGACGAGGTTGACCCGTTTGTGTTGGGCAGCAGTGAAGTCGGCGGCGGATGCGGGAAAAATTGCATAACACAATTGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

22.42

Weight (kDa)

5.4

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 261
AccII CGCG 1 cut(s) 434
AciI CCGC 8 cut(s) 54, 181, 261, 288, 420, 591, 594, 600
AclWI GGATC 6 cut(s) 191, 218, 339, 352, 398, 411
AfaI GTAC 1 cut(s) 399
AfiI CCNNNNNNNGG 2 cut(s) 363, 413
AluBI AGCT 2 cut(s) 176, 513
AluI AGCT 2 cut(s) 176, 513
Alw26I GTCTC 2 cut(s) 10, 39
AlwI GGATC 6 cut(s) 191, 218, 339, 352, 398, 411
Ama87I CYCGRG 1 cut(s) 11
AoxI GGCC 1 cut(s) 354
ApeKI GCWGC 3 cut(s) 138, 324, 576
AspLEI GCGC 2 cut(s) 324, 425
AspS9I GGNCC 1 cut(s) 354
AsuHPI GGTGA 2 cut(s) 173, 302
AvaI CYCGRG 1 cut(s) 11
BamHI GGATCC 2 cut(s) 344, 403
BbsI GAAGAC 1 cut(s) 555
BbvI GCAGC 3 cut(s) 125, 311, 588
BccI CCATC 6 cut(s) 152, 284, 345, 438, 448, 511
BceAI ACGGC 1 cut(s) 112
BcgI CGANNNNNNTGC 2 cut(s) 568, 602
BcoDI GTCTC 2 cut(s) 10, 39
BfaI CTAG 1 cut(s) 173
BfoI RGCGCY 1 cut(s) 426
BisI GCNGC 6 cut(s) 55, 139, 325, 421, 577, 592
BlpI GCTNAGC 1 cut(s) 177
BlsI GCNGC 6 cut(s) 56, 140, 326, 422, 578, 593
BmeT110I CYCGRG 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 2 cut(s) 346, 405
BmsI GCATC 2 cut(s) 359, 587
BpiI GAAGAC 1 cut(s) 555
Bpu1102I GCTNAGC 1 cut(s) 177
BsaBI GATNNNNATC 3 cut(s) 222, 275, 408
BsaI GGTCTC 2 cut(s) 10, 39
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 2 cut(s) 363, 413
Bse118I RCCGGY 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 380, 386
Bse8I GATNNNNATC 3 cut(s) 222, 275, 408
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 4 cut(s) 374, 449, 522, 602
BseJI GATNNNNATC 3 cut(s) 222, 275, 408
BseLI CCNNNNNNNGG 2 cut(s) 363, 413
BseNI ACTGG 2 cut(s) 380, 386
BseXI GCAGC 3 cut(s) 125, 311, 588
BseYI CCCAGC 1 cut(s) 425
BsgI GTGCAG 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 434
BshFI GGCC 1 cut(s) 356
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 1 cut(s) 31
BslI CCNNNNNNNGG 2 cut(s) 363, 413
BsmAI GTCTC 2 cut(s) 10, 39
BsnI GGCC 1 cut(s) 356
Bso31I GGTCTC 2 cut(s) 10, 39
BsoBI CYCGRG 1 cut(s) 11
Bsp1407I TGTACA 1 cut(s) 397
Bsp143I GATC 7 cut(s) 183, 223, 344, 361, 403, 409, 506
Bsp1720I GCTNAGC 1 cut(s) 177
Bsp68I TCGCGA 1 cut(s) 434
BspACI CCGC 8 cut(s) 54, 181, 261, 288, 420, 591, 594, 600
BspANI GGCC 1 cut(s) 356
BspFNI CGCG 1 cut(s) 434
BspLI GGNNCC 2 cut(s) 346, 405
BspPI GGATC 6 cut(s) 191, 218, 339, 352, 398, 411
BspTNI GGTCTC 2 cut(s) 10, 39
BsrBI CCGCTC 1 cut(s) 261
BsrFI RCCGGY 1 cut(s) 30
BsrGI TGTACA 1 cut(s) 397
BsrI ACTGG 2 cut(s) 380, 386
BssAI RCCGGY 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 7 cut(s) 183, 223, 344, 361, 403, 409, 506
BssT1I CCWWGG 1 cut(s) 84
BstAUI TGTACA 1 cut(s) 397
BstC8I GCNNGC 1 cut(s) 523
BstDEI CTNAG 2 cut(s) 177, 358
BstEII GGTNACC 1 cut(s) 304
BstF5I GGATG 4 cut(s) 374, 449, 522, 602
BstFNI CGCG 1 cut(s) 434
BstH2I RGCGCY 1 cut(s) 426
BstHHI GCGC 2 cut(s) 324, 425
BstKTI GATC 7 cut(s) 186, 226, 347, 364, 406, 412, 509
BstMAI GTCTC 2 cut(s) 10, 39
BstMBI GATC 7 cut(s) 183, 223, 344, 361, 403, 409, 506
BstMWI GCNNNNNNNGC 2 cut(s) 431, 597
BstNSI RCATGY 1 cut(s) 254
BstPI GGTNACC 1 cut(s) 304
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 3 cut(s) 125, 311, 588
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 4 cut(s) 183, 223, 344, 403
BstXI CCANNNNNNTGG 1 cut(s) 476
BstYI RGATCY 4 cut(s) 183, 223, 344, 403
BsuRI GGCC 1 cut(s) 356
BtsCI GGATG 4 cut(s) 374, 449, 522, 602
BtsI GCAGTG 1 cut(s) 586
BtsIMutI CAGTG 1 cut(s) 586
BtuMI TCGCGA 1 cut(s) 434
Cac8I GCNNGC 1 cut(s) 523
CfoI GCGC 2 cut(s) 324, 425
Cfr10I RCCGGY 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 354
CseI GACGC 1 cut(s) 514
Csp6I GTAC 1 cut(s) 398
CviAII CATG 2 cut(s) 251, 476
CviJI RGCY 4 cut(s) 138, 176, 356, 513
CviKI_1 RGCY 4 cut(s) 138, 176, 356, 513
CviQI GTAC 1 cut(s) 398
DdeI CTNAG 2 cut(s) 177, 358
DpnI GATC 7 cut(s) 185, 225, 346, 363, 405, 411, 508
DpnII GATC 7 cut(s) 183, 223, 344, 361, 403, 409, 506
EciI GGCGGA 1 cut(s) 609
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 2 cut(s) 10, 39
Eco88I CYCGRG 1 cut(s) 11
Eco91I GGTNACC 1 cut(s) 304
EcoO65I GGTNACC 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 2 cut(s) 254, 479
FaiI YATR 3 cut(s) 252, 477, 614
FalI AAGNNNNNCTT 2 cut(s) 482, 514
FatI CATG 2 cut(s) 250, 475
FauI CCCGC 1 cut(s) 593
Fnu4HI GCNGC 6 cut(s) 55, 139, 325, 421, 577, 592
FokI GGATG 4 cut(s) 381, 456, 529, 609
Fsp4HI GCNGC 6 cut(s) 55, 139, 325, 421, 577, 592
FspBI CTAG 1 cut(s) 173
GlaI GCGC 2 cut(s) 323, 424
GluI GCNGC 6 cut(s) 55, 139, 325, 421, 577, 592
GsaI CCCAGC 1 cut(s) 429
HaeII RGCGCY 1 cut(s) 426
HaeIII GGCC 1 cut(s) 356
HapII CCGG 1 cut(s) 31
HgaI GACGC 1 cut(s) 514
HhaI GCGC 2 cut(s) 324, 425
Hin1II CATG 2 cut(s) 254, 479
Hin6I GCGC 2 cut(s) 322, 423
HinP1I GCGC 2 cut(s) 322, 423
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HinfI GANTC 3 cut(s) 118, 271, 436
HpaII CCGG 1 cut(s) 31
HphI GGTGA 2 cut(s) 173, 302
Hpy166II GTNNAC 2 cut(s) 266, 559
Hpy188I TCNGA 4 cut(s) 117, 228, 451, 536
Hpy188III TCNNGA 5 cut(s) 11, 13, 348, 407, 433
Hpy8I GTNNAC 2 cut(s) 266, 559
Hpy99I CGWCG 3 cut(s) 232, 314, 530
HpyAV CCTTC 1 cut(s) 479
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 3 cut(s) 93, 256, 612
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 597
HpyF3I CTNAG 2 cut(s) 177, 358
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 2 cut(s) 254, 479
HspAI GCGC 2 cut(s) 322, 423
Kzo9I GATC 7 cut(s) 183, 223, 344, 361, 403, 409, 506
Lsp1109I GCAGC 3 cut(s) 125, 311, 588
LweI GCATC 2 cut(s) 359, 587
MaeI CTAG 1 cut(s) 173
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 1 cut(s) 304
MalI GATC 7 cut(s) 185, 225, 346, 363, 405, 411, 508
MbiI CCGCTC 1 cut(s) 261
MboI GATC 7 cut(s) 183, 223, 344, 361, 403, 409, 506
MboII GAAGA 3 cut(s) 99, 117, 560
MfeI CAATTG 1 cut(s) 620
MflI RGATCY 4 cut(s) 183, 223, 344, 403
MluCI AATT 2 cut(s) 607, 620
MlyI GAGTC 2 cut(s) 112, 445
MmeI TCCRAC 3 cut(s) 220, 251, 429
MnlI CCTC 4 cut(s) 44, 128, 289, 547
MslI CAYNNNNRTG 1 cut(s) 474
MspI CCGG 1 cut(s) 31
MunI CAATTG 1 cut(s) 620
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 2 cut(s) 431, 597
NdeII GATC 7 cut(s) 183, 223, 344, 361, 403, 409, 506
NlaIII CATG 2 cut(s) 254, 479
NlaIV GGNNCC 2 cut(s) 346, 405
NruI TCGCGA 1 cut(s) 434
NspI RCATGY 1 cut(s) 254
PaeR7I CTCGAG 1 cut(s) 11
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 6 cut(s) 56, 140, 326, 422, 578, 593
PleI GAGTC 2 cut(s) 112, 444
PpsI GAGTC 2 cut(s) 112, 444
PspEI GGTNACC 1 cut(s) 304
PspFI CCCAGC 1 cut(s) 425
PspN4I GGNNCC 2 cut(s) 346, 405
PspPI GGNCC 1 cut(s) 354
PsuI RGATCY 4 cut(s) 183, 223, 344, 403
RruI TCGCGA 1 cut(s) 434
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 474
SatI GCNGC 6 cut(s) 55, 139, 325, 421, 577, 592
Sau3AI GATC 7 cut(s) 183, 223, 344, 361, 403, 409, 506
Sau96I GGNCC 1 cut(s) 354
SchI GAGTC 2 cut(s) 112, 445
SetI ASST 6 cut(s) 178, 247, 300, 495, 515, 558
SfaNI GCATC 2 cut(s) 359, 587
Sfr274I CTCGAG 1 cut(s) 11
SlaI CTCGAG 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 2 cut(s) 607, 620
SsiI CCGC 8 cut(s) 54, 181, 261, 288, 420, 591, 594, 600
SspMI CTAG 1 cut(s) 173
StyI CCWWGG 1 cut(s) 84
TaiI ACGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 607, 620
TatI WGTACW 1 cut(s) 397
TauI GCSGC 3 cut(s) 57, 423, 594
TfiI GAWTC 1 cut(s) 271
TscAI CASTG 1 cut(s) 586
TseI GCWGC 3 cut(s) 138, 324, 576
TspGWI ACGGA 1 cut(s) 327
TspRI CASTG 1 cut(s) 586
XceI RCATGY 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 1 cut(s) 510
XhoI CTCGAG 1 cut(s) 11
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.