Rh2BG644700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000442
Physical Location & Seq
Reverse (-)
86468102 .. 86471972
3871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG644700.1

Sequence Viewer

Length: 303 bp
ATGAGTTTGGAGGATGTGAAGAGGGTTGCTTTGCATTATGGATTTCATATAGAGATCAATGATGCAAGTAAGTATGCCCAAGTACTGAAGGCCAATTCACTGGATCTGGTTAGTGGAAGATTCACAATTGGCAGTGATGTCGTTCTGACTAATTGTGCTGGAGGTTGGCATGCACAGAGCGGTGGACTGATTCCCAGATCTGTTGGTGGTGATGAATGCGGAGGCTTCTATGCCGACGACGGCAATTTGGTGTGGGCTAACGACGACGTGGTGCGATGCCCAGATGGCCTTGCCGGATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.54

Weight (kDa)

4.67

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 180
AciI CCGC 2 cut(s) 180, 219
AclWI GGATC 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 107
AfaI GTAC 1 cut(s) 84
AjiI CACGTC 1 cut(s) 268
AlwI GGATC 1 cut(s) 111
AoxI GGCC 2 cut(s) 90, 286
AsuHPI GGTGA 1 cut(s) 221
BccI CCATC 1 cut(s) 278
BceAI ACGGC 1 cut(s) 256
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BglI GCCNNNNNGGC 1 cut(s) 285
BglII AGATCT 1 cut(s) 197
BmcAI AGTACT 1 cut(s) 84
BmgBI CACGTC 1 cut(s) 268
BmsI GCATC 2 cut(s) 52, 266
BpmI CTGGAG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 19
BseNI ACTGG 1 cut(s) 105
BshFI GGCC 2 cut(s) 92, 288
BsiSI CCGG 1 cut(s) 294
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 2 cut(s) 92, 288
Bsp143I GATC 4 cut(s) 54, 103, 197, 296
BspACI CCGC 2 cut(s) 180, 219
BspANI GGCC 2 cut(s) 92, 288
BspPI GGATC 1 cut(s) 111
BsrBI CCGCTC 1 cut(s) 180
BsrI ACTGG 1 cut(s) 105
BssMI GATC 4 cut(s) 54, 103, 197, 296
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 171
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 4 cut(s) 57, 106, 200, 299
BstMBI GATC 4 cut(s) 54, 103, 197, 296
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 173
BstX2I RGATCY 2 cut(s) 103, 197
BstXI CCANNNNNNTGG 1 cut(s) 100
BstYI RGATCY 2 cut(s) 103, 197
BsuRI GGCC 2 cut(s) 92, 288
BtgZI GCGATG 1 cut(s) 289
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 98, 139
Cac8I GCNNGC 1 cut(s) 171
Csp6I GTAC 1 cut(s) 83
CviAII CATG 1 cut(s) 170
CviJI RGCY 4 cut(s) 92, 225, 257, 288
CviKI_1 RGCY 4 cut(s) 92, 225, 257, 288
CviQI GTAC 1 cut(s) 83
DpnI GATC 4 cut(s) 56, 105, 199, 298
DpnII GATC 4 cut(s) 54, 103, 197, 296
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 107
FaeI CATG 1 cut(s) 173
FaiI YATR 6 cut(s) 39, 48, 50, 75, 171, 231
FatI CATG 1 cut(s) 169
FokI GGATG 1 cut(s) 26
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 2 cut(s) 92, 288
HapII CCGG 1 cut(s) 294
Hin1II CATG 1 cut(s) 173
HinfI GANTC 2 cut(s) 120, 190
HpaII CCGG 1 cut(s) 294
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 1 cut(s) 300
Hpy8I GTNNAC 1 cut(s) 185
Hpy99I CGWCG 4 cut(s) 239, 242, 266, 269
HpyAV CCTTC 1 cut(s) 82
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 3 cut(s) 34, 65, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 1 cut(s) 173
Kzo9I GATC 4 cut(s) 54, 103, 197, 296
LpnPI CCDG 5 cut(s) 86, 92, 144, 208, 294
LweI GCATC 2 cut(s) 52, 266
MaeII ACGT 1 cut(s) 267
MalI GATC 4 cut(s) 56, 105, 199, 298
MbiI CCGCTC 1 cut(s) 180
MboI GATC 4 cut(s) 54, 103, 197, 296
MboII GAAGA 2 cut(s) 31, 129
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 2 cut(s) 103, 197
MluCI AATT 4 cut(s) 94, 126, 151, 244
MnlI CCTC 4 cut(s) 4, 15, 155, 215
MspI CCGG 1 cut(s) 294
MunI CAATTG 1 cut(s) 126
Mva1269I GAATGC 1 cut(s) 221
MwoI GCNNNNNNNGC 1 cut(s) 285
NdeII GATC 4 cut(s) 54, 103, 197, 296
NlaIII CATG 1 cut(s) 173
NspI RCATGY 1 cut(s) 173
PaeI GCATGC 1 cut(s) 173
PctI GAATGC 1 cut(s) 221
PfeI GAWTC 2 cut(s) 120, 190
PsuI RGATCY 2 cut(s) 103, 197
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
Sau3AI GATC 4 cut(s) 54, 103, 197, 296
ScaI AGTACT 1 cut(s) 84
SetI ASST 2 cut(s) 166, 270
SfaNI GCATC 2 cut(s) 52, 266
SgeI CNNG 9 cut(s) 78, 92, 113, 119, 171, 182, 207, 280, 293
SphI GCATGC 1 cut(s) 173
Sse9I AATT 4 cut(s) 94, 126, 151, 244
SsiI CCGC 2 cut(s) 180, 219
TaiI ACGT 1 cut(s) 270
TasI AATT 4 cut(s) 94, 126, 151, 244
TatI WGTACW 1 cut(s) 82
TfiI GAWTC 2 cut(s) 120, 190
TscAI CASTG 2 cut(s) 105, 139
TspDTI ATGAA 2 cut(s) 35, 228
TspRI CASTG 2 cut(s) 105, 139
XceI RCATGY 1 cut(s) 173
ZrmI AGTACT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.