Rh2CG611000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
78872534 .. 78872971
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG611000.1

Sequence Viewer

Length: 438 bp
ATGGCTTCTATGTTTCGTCTTTTTCGAAGATTGTTTACTTCTAAACCCAACTATCCTTCTACTTCTAGACCCATCTATCATTCTAGTCTGGTCAACCATACCTCCGACATTCACTTTACTCTAATGGATTTTATACAAAATCCAACACAATATGCAACACAGGACTTGAGAAAGAACTTTGCAATGGATGTCATTGAAGACATCTGTTCAAAAAAGGCGATGGGCATTGATGGTGGATCCTTAGCTTTAAATCACATTAAAGTGATTGGTTATAAAGCTGTACTTCCACAAGACGAATACAACCGCACGGTGCACAAGAATTATATTGAAGGCTACAAAGATTTCTTTGACAATTTATTTGGAGGATATAGTGAACCATTGGACGACGAGAATTATATAGACATCAAGTCATATGTGAAGGATCTAAAGACAACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.81

Weight (kDa)

6.5

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AciI CCGC 1 cut(s) 304
AclWI GGATC 3 cut(s) 231, 244, 429
AfaI GTAC 1 cut(s) 282
AgsI TTSAA 3 cut(s) 197, 210, 329
AhdI GACNNNNNGTC 1 cut(s) 406
AluBI AGCT 2 cut(s) 245, 278
AluI AGCT 2 cut(s) 245, 278
Alw21I GWGCWC 1 cut(s) 315
Alw44I GTGCAC 1 cut(s) 311
AlwI GGATC 3 cut(s) 231, 244, 429
ApaLI GTGCAC 1 cut(s) 311
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
AsuII TTCGAA 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 315
BamHI GGATCC 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 19, 51
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 315
BccI CCATC 3 cut(s) 80, 214, 224
BfaI CTAG 2 cut(s) 66, 84
BmeRI GACNNNNNGTC 1 cut(s) 406
BmiI GGNNCC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 241
Bpu14I TTCGAA 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 187
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bse3DI GCAATG 1 cut(s) 189
BseGI GGATG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 189
BseSI GKGCMC 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 315
Bsp119I TTCGAA 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 2 cut(s) 236, 421
BspACI CCGC 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 238
BspPI GGATC 3 cut(s) 231, 244, 429
BspT104I TTCGAA 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 189
BssMI GATC 2 cut(s) 236, 421
Bst4CI ACNGT 1 cut(s) 310
BstBI TTCGAA 1 cut(s) 25
BstDEI CTNAG 1 cut(s) 241
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 2 cut(s) 239, 424
BstMBI GATC 2 cut(s) 236, 421
BstSLI GKGCMC 1 cut(s) 315
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 2 cut(s) 236, 421
BstYI RGATCY 2 cut(s) 236, 421
BtgZI GCGATG 1 cut(s) 233
BtsCI GGATG 1 cut(s) 193
Csp6I GTAC 1 cut(s) 281
CviJI RGCY 4 cut(s) 5, 245, 278, 333
CviKI_1 RGCY 4 cut(s) 5, 245, 278, 333
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 1 cut(s) 241
DpnI GATC 2 cut(s) 238, 423
DpnII GATC 2 cut(s) 236, 421
DraI TTTAAA 1 cut(s) 249
DriI GACNNNNNGTC 1 cut(s) 406
Eam1105I GACNNNNNGTC 1 cut(s) 406
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FauNDI CATATG 1 cut(s) 412
FokI GGATG 1 cut(s) 200
FspBI CTAG 2 cut(s) 66, 84
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
Hpy166II GTNNAC 4 cut(s) 36, 94, 313, 374
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 66
Hpy8I GTNNAC 4 cut(s) 36, 94, 313, 374
Hpy99I CGWCG 1 cut(s) 389
HpyAV CCTTC 3 cut(s) 66, 323, 412
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4IV ACGT 1 cut(s) 434
HpyCH4V TGCA 3 cut(s) 155, 182, 313
HpyF3I CTNAG 1 cut(s) 241
HpySE526I ACGT 1 cut(s) 434
Kzo9I GATC 2 cut(s) 236, 421
LpnPI CCDG 2 cut(s) 74, 146
MaeI CTAG 2 cut(s) 66, 84
MaeII ACGT 1 cut(s) 434
MalI GATC 2 cut(s) 238, 423
MboI GATC 2 cut(s) 236, 421
MboII GAAGA 2 cut(s) 39, 209
MflI RGATCY 2 cut(s) 236, 421
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 3 cut(s) 319, 352, 391
MmeI TCCRAC 2 cut(s) 129, 167
MnlI CCTC 2 cut(s) 112, 356
MseI TTAA 2 cut(s) 248, 258
MslI CAYNNNNRTG 1 cut(s) 260
NdeI CATATG 1 cut(s) 412
NdeII GATC 2 cut(s) 236, 421
NlaIV GGNNCC 1 cut(s) 238
NspV TTCGAA 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PsiI TTATAA 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 238
PsuI RGATCY 2 cut(s) 236, 421
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
RseI CAYNNNNRTG 1 cut(s) 260
SaqAI TTAA 2 cut(s) 248, 258
Sau3AI GATC 2 cut(s) 236, 421
SduI GDGCHC 1 cut(s) 315
SetI ASST 4 cut(s) 104, 247, 280, 437
SfuI TTCGAA 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 3 cut(s) 319, 352, 391
SsiI CCGC 1 cut(s) 304
SspMI CTAG 2 cut(s) 66, 84
TaaI ACNGT 1 cut(s) 310
TaiI ACGT 1 cut(s) 437
TaqI TCGA 1 cut(s) 25
TasI AATT 3 cut(s) 319, 352, 391
TatI WGTACW 1 cut(s) 280
Tru1I TTAA 2 cut(s) 248, 258
Tru9I TTAA 2 cut(s) 248, 258
VneI GTGCAC 1 cut(s) 311
XbaI TCTAGA 1 cut(s) 65
XspI CTAG 2 cut(s) 66, 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.