Rh6DG386400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000442
Physical Location & Seq
Forward (+)
57967985 .. 57968335
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG386400.1

Sequence Viewer

Length: 351 bp
ATGACAGCTAGGGATTGGGATGAGGAAGGCTTCGTTTCTCCTGCAGATACGGCGATGGCTTGTCCTGCTGGATGGCAACTGGCAGAGTCCGTCCATTGTCATGGTTCGGCGGGGAAGCTTCTCTCTCCTCGATCAGGTTGGATGGCGAGCGTCGGTGTCCGAAATGGCAGGGAAGACGACGTTGACCCATCTGTGTTGGGCAGTAATGCAGTCGGCGGCGATTGCGGGGTGTTTCCCTCGACTGGCGTCGGCGACGGCGCAACTGGTGGTTGTTGGCTGGAAGGACACTTGTGGGCTCATTGGGCTAGGGCTTTGGTTTACCCTACTCTTTGGGCCTGCTCTTGGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.18

Weight (kDa)

4.72

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 110, 216, 225
AcyI GRCGYC 1 cut(s) 246
AfiI CCNNNNNNNGG 3 cut(s) 134, 242, 342
AluBI AGCT 2 cut(s) 8, 118
AluI AGCT 2 cut(s) 8, 118
AoxI GGCC 1 cut(s) 333
AspLEI GCGC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 333
BanII GRGCYC 1 cut(s) 298
BbsI GAAGAC 1 cut(s) 180
BccI CCATC 4 cut(s) 49, 66, 136, 196
BceAI ACGGC 2 cut(s) 66, 271
BfaI CTAG 2 cut(s) 9, 306
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 217
BlsI GCNGC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 333
BoxI GACNNNNGTC 1 cut(s) 245
BpiI GAAGAC 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 246
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 242, 342
Bse1I ACTGG 3 cut(s) 84, 247, 268
BseGI GGATG 3 cut(s) 25, 77, 147
BseLI CCNNNNNNNGG 3 cut(s) 134, 242, 342
BseNI ACTGG 3 cut(s) 84, 247, 268
BseRI GAGGAG 1 cut(s) 117
BshFI GGCC 1 cut(s) 335
BslI CCNNNNNNNGG 3 cut(s) 134, 242, 342
BsnI GGCC 1 cut(s) 335
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 1 cut(s) 131
BspACI CCGC 3 cut(s) 110, 216, 225
BspANI GGCC 1 cut(s) 335
BspMAI CTGCAG 1 cut(s) 46
BsrI ACTGG 3 cut(s) 84, 247, 268
BssMI GATC 1 cut(s) 131
BssNI GRCGYC 1 cut(s) 246
BstACI GRCGYC 1 cut(s) 246
BstC8I GCNNGC 2 cut(s) 148, 337
BstENI CCTNNNNNAGG 1 cut(s) 132
BstF5I GGATG 3 cut(s) 25, 77, 147
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 1 cut(s) 134
BstMBI GATC 1 cut(s) 131
BstMWI GCNNNNNNNGC 4 cut(s) 50, 65, 222, 302
BstPAI GACNNNNGTC 1 cut(s) 245
BstSFI CTRYAG 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 180
BstXI CCANNNNNNTGG 1 cut(s) 101
BsuRI GGCC 1 cut(s) 335
BtgZI GCGATG 1 cut(s) 68
BtsCI GGATG 3 cut(s) 25, 77, 147
Cac8I GCNNGC 2 cut(s) 148, 337
CfoI GCGC 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 333
CseI GACGC 2 cut(s) 139, 235
CviAII CATG 1 cut(s) 101
CviJI RGCY 9 cut(s) 8, 30, 59, 118, 277, 296, 305, 311, 335
CviKI_1 RGCY 9 cut(s) 8, 30, 59, 118, 277, 296, 305, 311, 335
DpnI GATC 1 cut(s) 133
DpnII GATC 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 298
EcoNI CCTNNNNNAGG 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 298
FaeI CATG 1 cut(s) 104
FaiI YATR 1 cut(s) 102
FatI CATG 1 cut(s) 100
FauI CCCGC 2 cut(s) 103, 218
Fnu4HI GCNGC 1 cut(s) 217
FokI GGATG 3 cut(s) 32, 84, 154
FriOI GRGCYC 1 cut(s) 298
Fsp4HI GCNGC 1 cut(s) 217
FspBI CTAG 2 cut(s) 9, 306
GlaI GCGC 1 cut(s) 259
GluI GCNGC 1 cut(s) 217
HaeIII GGCC 1 cut(s) 335
HgaI GACGC 2 cut(s) 139, 235
HhaI GCGC 1 cut(s) 260
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 1 cut(s) 104
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 184, 319
Hpy188I TCNGA 1 cut(s) 161
Hpy8I GTNNAC 2 cut(s) 184, 319
Hpy99I CGWCG 4 cut(s) 155, 182, 251, 257
HpyAV CCTTC 2 cut(s) 20, 275
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 44, 209
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 65, 222, 302
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 1 cut(s) 104
HspAI GCGC 1 cut(s) 258
Kzo9I GATC 1 cut(s) 131
LpnPI CCDG 9 cut(s) 54, 54, 65, 78, 120, 154, 228, 249, 263
MaeI CTAG 2 cut(s) 9, 306
MaeII ACGT 1 cut(s) 180
MalI GATC 1 cut(s) 133
MboI GATC 1 cut(s) 131
MboII GAAGA 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 298
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 3 cut(s) 16, 138, 247
MslI CAYNNNNRTG 1 cut(s) 99
MwoI GCNNNNNNNGC 4 cut(s) 50, 65, 222, 302
NdeII GATC 1 cut(s) 131
NlaIII CATG 1 cut(s) 104
PkrI GCNGC 1 cut(s) 218
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PshAI GACNNNNGTC 1 cut(s) 245
PspPI GGNCC 1 cut(s) 333
PstI CTGCAG 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 99
SatI GCNGC 1 cut(s) 217
Sau3AI GATC 1 cut(s) 131
Sau96I GGNCC 1 cut(s) 333
SchI GAGTC 1 cut(s) 95
SduI GDGCHC 1 cut(s) 298
SetI ASST 4 cut(s) 10, 120, 139, 183
SfcI CTRYAG 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 99
SsiI CCGC 3 cut(s) 110, 216, 225
SspMI CTAG 2 cut(s) 9, 306
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 130, 239
TauI GCSGC 1 cut(s) 219
TspGWI ACGGA 1 cut(s) 79
XagI CCTNNNNNAGG 1 cut(s) 132
XspI CTAG 2 cut(s) 9, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.