Rh2AG630900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000442
Physical Location & Seq
Reverse (-)
85649466 .. 85652138
2673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG630900.1

Sequence Viewer

Length: 864 bp
ATGGATTTTATACAAAATCCAACACAGTATGCAGCACAGGACTTGAGAAAGAACTTTGCAATGGATGTCATTGAAAACATCCGTTCAAAAAGGGAGATGGGCATTGTTGGTGGATCCGTAGCTTTAAATCACATTAAAGTGATCGGTTCTAGAGCTAGACTTCCACAAGATGATTACAACTCCATGGTGCACAAGAATTATATTGAAGGCTACAAAGATTTCTTTGACGATTTATTTGGAGGCAGTAGTGAACCATTGGACGACGAGAATTATATAGACATCAAGGCATATGTGAAGGATCTGAAGACAATAGACCAAATGTTAGTGCTGCTTCGCCACCCTTATTTTCAATCAGTGGATGAAGCTCTGAGATTCATTCCATCCACCCTTAAAGAACTTGATGGCTTAAGGGGTAAAACGTTTCCACTTCCAAGAACTGGGGCTAATCAAGCAACCCCCGATCTATTGCTAGTGCCTGACGAACGTCATGTCGATTGGAAACGTGCATACATGCATCTATGCCGCACAAAGAGAGAGAATATTTCAGAGTCAATTGGCAGAATTGAATCTGAAGATTACAGACGTGGATTTACGTCTCTATATAATGCTGGAAAGAATGGCACACCGTATGAAGATACCAATGAGATAGATGAGCTGAAGTTTTATGCAAACGTCTGTCAAAATCTAGTAAGATATATGAAGATACGTAGCGAAGGTGATTTATACCAAGCCTTGTGTCGGGCGTTTCCAGACGTGCCCACAAAAGTGTTCAAGTTATTCTGGACCTATGACGGGCAAGTTAACTTGGACTTTGTCAGGCCTCTGATGAGCCTTTTTAAAAAGAAAGAGCGGATCTACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

33.44

Weight (kDa)

6.55

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 437
AccBSI CCGCTC 1 cut(s) 850
AciI CCGC 2 cut(s) 523, 850
AclI AACGTT 1 cut(s) 419
AclWI GGATC 4 cut(s) 108, 121, 306, 860
AcuI CTGAAG 3 cut(s) 323, 591, 677
AfiI CCNNNNNNNGG 3 cut(s) 437, 738, 792
AflII CTTAAG 1 cut(s) 406
AgsI TTSAA 6 cut(s) 74, 87, 206, 350, 566, 772
AjiI CACGTC 2 cut(s) 584, 754
AleI CACNNNNGTG 1 cut(s) 764
AluBI AGCT 4 cut(s) 122, 155, 365, 655
AluI AGCT 4 cut(s) 122, 155, 365, 655
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 600
Alw44I GTGCAC 1 cut(s) 188
AlwI GGATC 4 cut(s) 108, 121, 306, 860
AoxI GGCC 1 cut(s) 818
ApaLI GTGCAC 1 cut(s) 188
ApeKI GCWGC 2 cut(s) 32, 328
ArsI GACNNNNNNTTYG 4 cut(s) 218, 250, 474, 506
AspS9I GGNCC 1 cut(s) 783
AsuHPI GGTGA 1 cut(s) 728
AvaII GGWCC 1 cut(s) 783
BaeGI GKGCMC 2 cut(s) 192, 759
BamHI GGATCC 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 44, 315
BccI CCATC 3 cut(s) 91, 388, 395
BcoDI GTCTC 1 cut(s) 600
BfaI CTAG 4 cut(s) 150, 156, 470, 686
BfrI CTTAAG 1 cut(s) 406
BisI GCNGC 3 cut(s) 33, 329, 523
BlsI GCNGC 3 cut(s) 34, 330, 524
Bme18I GGWCC 1 cut(s) 783
BmgBI CACGTC 2 cut(s) 584, 754
BmgT120I GGNCC 1 cut(s) 783
BmiI GGNNCC 1 cut(s) 115
BmrI ACTGGG 1 cut(s) 447
BmsI GCATC 1 cut(s) 523
BmuI ACTGGG 1 cut(s) 447
BoxI GACNNNNGTC 1 cut(s) 483
BpiI GAAGAC 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 64
BsaAI YACGTR 1 cut(s) 707
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 3 cut(s) 437, 738, 792
Bse1I ACTGG 1 cut(s) 442
Bse3DI GCAATG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 4 cut(s) 70, 78, 364, 380
BseLI CCNNNNNNNGG 3 cut(s) 437, 738, 792
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 1 cut(s) 442
BseSI GKGCMC 2 cut(s) 192, 759
BseXI GCAGC 2 cut(s) 44, 315
BshFI GGCC 1 cut(s) 820
BsiHKAI GWGCWC 1 cut(s) 192
BslI CCNNNNNNNGG 3 cut(s) 437, 738, 792
BsmAI GTCTC 1 cut(s) 600
BsmBI CGTCTC 1 cut(s) 600
BsnI GGCC 1 cut(s) 820
Bsp1286I GDGCHC 2 cut(s) 192, 759
Bsp143I GATC 5 cut(s) 113, 141, 298, 460, 852
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 2 cut(s) 523, 850
BspANI GGCC 1 cut(s) 820
BspCNI CTCAG 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 115
BspPI GGATC 4 cut(s) 108, 121, 306, 860
BspTI CTTAAG 1 cut(s) 406
BsrBI CCGCTC 1 cut(s) 850
BsrDI GCAATG 1 cut(s) 66
BsrI ACTGG 1 cut(s) 442
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 5 cut(s) 113, 141, 298, 460, 852
BssT1I CCWWGG 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 27, 627
BstAFI CTTAAG 1 cut(s) 406
BstBAI YACGTR 1 cut(s) 707
BstDEI CTNAG 1 cut(s) 368
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 4 cut(s) 70, 78, 364, 380
BstKTI GATC 5 cut(s) 116, 144, 301, 463, 855
BstMAI GTCTC 1 cut(s) 600
BstMBI GATC 5 cut(s) 113, 141, 298, 460, 852
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstNSI RCATGY 1 cut(s) 514
BstPAI GACNNNNGTC 1 cut(s) 483
BstSLI GKGCMC 2 cut(s) 192, 759
BstSNI TACGTA 1 cut(s) 707
BstV1I GCAGC 2 cut(s) 44, 315
BstV2I GAAGAC 1 cut(s) 311
BstX2I RGATCY 3 cut(s) 113, 298, 852
BstYI RGATCY 3 cut(s) 113, 298, 852
BsuRI GGCC 1 cut(s) 820
BtgI CCRYGG 1 cut(s) 183
BtrI CACGTC 2 cut(s) 584, 754
BtsCI GGATG 4 cut(s) 70, 78, 364, 380
BtsIMutI CAGTG 1 cut(s) 360
Cfr13I GGNCC 1 cut(s) 783
CviAII CATG 3 cut(s) 184, 488, 511
DdeI CTNAG 1 cut(s) 368
DpnI GATC 5 cut(s) 115, 143, 300, 462, 854
DpnII GATC 5 cut(s) 113, 141, 298, 460, 852
DraI TTTAAA 2 cut(s) 126, 838
Eco105I TACGTA 1 cut(s) 707
Eco130I CCWWGG 1 cut(s) 183
Eco147I AGGCCT 1 cut(s) 820
Eco47I GGWCC 1 cut(s) 783
Eco57I CTGAAG 3 cut(s) 323, 591, 677
EcoT14I CCWWGG 1 cut(s) 183
EcoT22I ATGCAT 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 183
Esp3I CGTCTC 1 cut(s) 600
FaeI CATG 3 cut(s) 187, 491, 514
FatI CATG 3 cut(s) 183, 487, 510
FauNDI CATATG 1 cut(s) 289
Fnu4HI GCNGC 3 cut(s) 33, 329, 523
FokI GGATG 4 cut(s) 65, 77, 367, 371
Fsp4HI GCNGC 3 cut(s) 33, 329, 523
FspBI CTAG 4 cut(s) 150, 156, 470, 686
GluI GCNGC 3 cut(s) 33, 329, 523
HaeIII GGCC 1 cut(s) 820
Hin1II CATG 3 cut(s) 187, 491, 514
HincII GTYRAC 1 cut(s) 802
HindII GTYRAC 1 cut(s) 802
HinfI GANTC 3 cut(s) 372, 548, 566
HpaI GTTAAC 1 cut(s) 802
HphI GGTGA 1 cut(s) 728
Hpy166II GTNNAC 3 cut(s) 190, 251, 802
Hpy188I TCNGA 5 cut(s) 303, 369, 547, 571, 825
Hpy188III TCNNGA 3 cut(s) 150, 749, 781
Hpy8I GTNNAC 3 cut(s) 190, 251, 802
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 3 cut(s) 200, 289, 707
HpyCH4III ACNGT 2 cut(s) 27, 627
HpyCH4IV ACGT 8 cut(s) 419, 484, 502, 583, 593, 672, 706, 753
HpyCH4V TGCA 6 cut(s) 32, 59, 190, 506, 514, 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 1 cut(s) 368
HpySE526I ACGT 8 cut(s) 419, 484, 502, 583, 593, 672, 706, 753
Hsp92II CATG 3 cut(s) 187, 491, 514
KspAI GTTAAC 1 cut(s) 802
Kzo9I GATC 5 cut(s) 113, 141, 298, 460, 852
LpnPI CCDG 7 cut(s) 23, 423, 489, 594, 762, 766, 802
Lsp1109I GCAGC 2 cut(s) 44, 315
LweI GCATC 1 cut(s) 523
MaeI CTAG 4 cut(s) 150, 156, 470, 686
MaeII ACGT 8 cut(s) 419, 484, 502, 583, 593, 672, 706, 753
MalI GATC 5 cut(s) 115, 143, 300, 462, 854
MbiI CCGCTC 1 cut(s) 850
MboI GATC 5 cut(s) 113, 141, 298, 460, 852
MboII GAAGA 4 cut(s) 316, 584, 644, 712
MfeI CAATTG 1 cut(s) 552
MflI RGATCY 3 cut(s) 113, 298, 852
MhlI GDGCHC 2 cut(s) 192, 759
MluCI AATT 4 cut(s) 196, 268, 552, 561
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 2 cut(s) 233, 831
Mph1103I ATGCAT 1 cut(s) 516
MseI TTAA 6 cut(s) 125, 135, 390, 407, 801, 837
MslI CAYNNNNRTG 2 cut(s) 137, 764
MspCI CTTAAG 1 cut(s) 406
MunI CAATTG 1 cut(s) 552
MwoI GCNNNNNNNGC 1 cut(s) 449
NcoI CCATGG 1 cut(s) 183
NdeI CATATG 1 cut(s) 289
NdeII GATC 5 cut(s) 113, 141, 298, 460, 852
NlaIII CATG 3 cut(s) 187, 491, 514
NlaIV GGNNCC 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 516
NspI RCATGY 1 cut(s) 514
OliI CACNNNNGTG 1 cut(s) 764
PceI AGGCCT 1 cut(s) 820
PfeI GAWTC 2 cut(s) 372, 566
PflFI GACNNNGTC 1 cut(s) 812
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 3 cut(s) 34, 330, 524
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
Ppu21I YACGTR 1 cut(s) 707
PshAI GACNNNNGTC 1 cut(s) 483
Psp1406I AACGTT 1 cut(s) 419
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 783
PsuI RGATCY 3 cut(s) 113, 298, 852
PsyI GACNNNGTC 1 cut(s) 812
RseI CAYNNNNRTG 2 cut(s) 137, 764
SaqAI TTAA 6 cut(s) 125, 135, 390, 407, 801, 837
SatI GCNGC 3 cut(s) 33, 329, 523
Sau3AI GATC 5 cut(s) 113, 141, 298, 460, 852
Sau96I GGNCC 1 cut(s) 783
SchI GAGTC 1 cut(s) 557
SduI GDGCHC 2 cut(s) 192, 759
SfaNI GCATC 1 cut(s) 523
SinI GGWCC 1 cut(s) 783
SmiMI CAYNNNNRTG 2 cut(s) 137, 764
SmlI CTYRAG 2 cut(s) 43, 406
SmoI CTYRAG 2 cut(s) 43, 406
SnaBI TACGTA 1 cut(s) 707
Sse9I AATT 4 cut(s) 196, 268, 552, 561
SseBI AGGCCT 1 cut(s) 820
SsiI CCGC 2 cut(s) 523, 850
SspI AATATT 1 cut(s) 541
SspMI CTAG 4 cut(s) 150, 156, 470, 686
StuI AGGCCT 1 cut(s) 820
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 27, 627
TaiI ACGT 8 cut(s) 422, 487, 505, 586, 596, 675, 709, 756
TaqI TCGA 1 cut(s) 492
TasI AATT 4 cut(s) 196, 268, 552, 561
TauI GCSGC 1 cut(s) 525
TfiI GAWTC 2 cut(s) 372, 566
Tru1I TTAA 6 cut(s) 125, 135, 390, 407, 801, 837
Tru9I TTAA 6 cut(s) 125, 135, 390, 407, 801, 837
TscAI CASTG 1 cut(s) 360
TseI GCWGC 2 cut(s) 32, 328
TspDTI ATGAA 4 cut(s) 364, 375, 645, 713
TspGWI ACGGA 2 cut(s) 71, 106
TspRI CASTG 1 cut(s) 360
Tth111I GACNNNGTC 1 cut(s) 812
Van91I CCANNNNNTGG 1 cut(s) 437
Vha464I CTTAAG 1 cut(s) 406
VneI GTGCAC 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 783
XbaI TCTAGA 1 cut(s) 149
XceI RCATGY 1 cut(s) 514
XspI CTAG 4 cut(s) 150, 156, 470, 686
Zsp2I ATGCAT 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.