Rw2G052220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000442
Physical Location & Seq
Reverse (-)
80046138 .. 80047692
1555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G052220.1

Sequence Viewer

Length: 996 bp
ATGGGGTTTCTAGGTGGCATTTTGAGGAAATTGGGCAGCAGCTCCATTGTCAGTAACATGGGGCCGAAGTTGAATTTGGGCACAAAGATGCATTGCTCATTTGGGACTCTGACCAGAAAACACATTTTTCTGGAAGATATTAAGCAAGAGGGCACATTGGAGAAAAAGAAAGCTTGCTTGAAGGGGCTCCTTCATGAAATGGTATGGAGAATGAGGAGGGGCATTCAAGGAGGATGCACAGACCCGGAACAGATTCGCGTAATTTATCGCAGAGCTCACTTGCCAGACGAGACATATGTAGTAGGGAAATACCCTAGCTACTTATTTTCAGTAAAAGATCTGGCAGTTCATCTTCACGAGAATGATCAAATGAGTTCAAGGGACAGCATGAAGTTTGAAGATTTCAAGATTTACACGAGCTTATTGAGCAACATAAGGCATCTTGTACTGTTGGCTGGGCATCCTCATCTACAAACAACAGTGCAAGAGCTAGAATACATACCAGCAGCACTTCATCAGATGGATTTGATTCCTGCCAAGCCAAATGCCCAATACCGACACCGATACCGGCACTTCCCACTTCCCCACCCCAATTGCCCTCAAGTTCCAAGAGCATTGGCATTTACATCTCCAGAGAAACATCTACACCAGTGGCAGGATGCTTATAGGAGAGTGTGTGTCAAAAGGAGGGTCCACATTGCACGGTCGATTGCAAGTGCCAGCAAAGAGTTTCATGAAGTGTACAACTACCGTAGCTCATTCAAGACAGCAGGATACAACGATAGTGATCCCATAGATGAGTTAAGATATTATAGCAATGTGATCAAGCACCACAAGAACCTAGATAAGGCAGTTGACTCCTTGTATGACATGTTTCCATCCAACACCACGGAGATGTTCAAATTTCATTGGTGCTATGATATGCATGCTATGGGGGCAATTAACCTCGAACACATCCAGCAGCAGGTAATAATACAATTTCCTTTACCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

38.53

Weight (kDa)

9.28

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 955
AccII CGCG 1 cut(s) 258
AclWI GGATC 1 cut(s) 782
AcsI RAATTY 2 cut(s) 73, 902
AfaI GTAC 2 cut(s) 447, 743
AfiI CCNNNNNNNGG 3 cut(s) 655, 847, 964
AflIII ACRYGT 1 cut(s) 870
AgsI TTSAA 8 cut(s) 73, 181, 227, 378, 398, 406, 763, 901
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 7 cut(s) 42, 173, 275, 318, 420, 490, 756
AluI AGCT 7 cut(s) 42, 173, 275, 318, 420, 490, 756
Alw21I GWGCWC 1 cut(s) 277
Alw26I GTCTC 1 cut(s) 284
AlwI GGATC 1 cut(s) 782
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 4 cut(s) 36, 39, 506, 961
ApoI RAATTY 2 cut(s) 73, 902
ArsI GACNNNNNNTTYG 2 cut(s) 675, 707
Asp700I GAANNNNTTC 1 cut(s) 252
AspS9I GGNCC 2 cut(s) 62, 691
AsuC2I CCSGG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 691
BaeGI GKGCMC 2 cut(s) 83, 155
BanII GRGCYC 2 cut(s) 189, 277
BauI CACGAG 2 cut(s) 356, 415
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 4 cut(s) 48, 51, 518, 973
BccI CCATC 2 cut(s) 514, 886
BciVI GTATCC 1 cut(s) 767
BclI TGATCA 2 cut(s) 364, 822
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 4 cut(s) 11, 315, 491, 842
BfuAI ACCTGC 1 cut(s) 955
BfuI GTATCC 1 cut(s) 767
BglII AGATCT 1 cut(s) 337
BisI GCNGC 4 cut(s) 37, 40, 507, 962
BlsI GCNGC 4 cut(s) 38, 41, 508, 963
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 691
BmgT120I GGNCC 2 cut(s) 62, 691
BmiI GGNNCC 3 cut(s) 63, 188, 692
BmrFI CCNGG 1 cut(s) 245
BmsI GCATC 5 cut(s) 78, 224, 448, 469, 649
BpmI CTGGAG 1 cut(s) 615
BpuEI CTTGAG 1 cut(s) 585
BpuMI CCSGG 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 786
BsaJI CCNNGG 1 cut(s) 888
BsaXI ACNNNNNCTCC 2 cut(s) 661, 691
Bsc4I CCNNNNNNNGG 3 cut(s) 655, 847, 964
Bse118I RCCGGY 1 cut(s) 567
Bse1I ACTGG 1 cut(s) 649
Bse3DI GCAATG 3 cut(s) 91, 696, 823
Bse8I GATNNNNATC 1 cut(s) 786
BseDI CCNNGG 1 cut(s) 888
BseGI GGATG 5 cut(s) 239, 460, 664, 878, 954
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 3 cut(s) 655, 847, 964
BseMI GCAATG 3 cut(s) 91, 696, 823
BseNI ACTGG 1 cut(s) 649
BseRI GAGGAG 1 cut(s) 229
BseSI GKGCMC 2 cut(s) 83, 155
BseXI GCAGC 4 cut(s) 48, 51, 518, 973
BseYI CCCAGC 1 cut(s) 455
Bsh1236I CGCG 1 cut(s) 258
Bsh1285I CGRYCG 1 cut(s) 707
BshFI GGCC 1 cut(s) 64
BsiEI CGRYCG 1 cut(s) 707
BsiHKAI GWGCWC 1 cut(s) 277
BsiSI CCGG 2 cut(s) 245, 568
BslFI GGGAC 2 cut(s) 118, 395
BslI CCNNNNNNNGG 3 cut(s) 655, 847, 964
BsmAI GTCTC 1 cut(s) 284
BsmFI GGGAC 2 cut(s) 118, 395
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 1 cut(s) 64
Bsp1286I GDGCHC 4 cut(s) 83, 155, 189, 277
Bsp1407I TGTACA 1 cut(s) 741
Bsp143I GATC 4 cut(s) 337, 364, 787, 822
BspANI GGCC 1 cut(s) 64
BspFNI CGCG 1 cut(s) 258
BspHI TCATGA 2 cut(s) 193, 733
BspLI GGNNCC 3 cut(s) 63, 188, 692
BspMI ACCTGC 1 cut(s) 955
BspPI GGATC 1 cut(s) 782
BsrDI GCAATG 3 cut(s) 91, 696, 823
BsrFI RCCGGY 1 cut(s) 567
BsrGI TGTACA 1 cut(s) 741
BsrI ACTGG 1 cut(s) 649
BssAI RCCGGY 1 cut(s) 567
BssECI CCNNGG 1 cut(s) 888
BssMI GATC 4 cut(s) 337, 364, 787, 822
BssSI CACGAG 2 cut(s) 356, 415
Bst2BI CACGAG 2 cut(s) 356, 415
Bst4CI ACNGT 4 cut(s) 450, 481, 705, 752
BstAUI TGTACA 1 cut(s) 741
BstC8I GCNNGC 3 cut(s) 175, 721, 927
BstDSI CCRYGG 1 cut(s) 888
BstENI CCTNNNNNAGG 1 cut(s) 845
BstF5I GGATG 5 cut(s) 239, 460, 664, 878, 954
BstFNI CGCG 1 cut(s) 258
BstKTI GATC 4 cut(s) 340, 367, 790, 825
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 4 cut(s) 337, 364, 787, 822
BstMCI CGRYCG 1 cut(s) 707
BstMWI GCNNNNNNNGC 2 cut(s) 426, 935
BstNSI RCATGY 2 cut(s) 874, 929
BstSCI CCNGG 1 cut(s) 243
BstSLI GKGCMC 2 cut(s) 83, 155
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 4 cut(s) 48, 51, 518, 973
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuI GTATCC 1 cut(s) 767
BsuRI GGCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 888
BtsCI GGATG 5 cut(s) 239, 460, 664, 878, 954
BtsIMutI CAGTG 2 cut(s) 486, 656
BveI ACCTGC 1 cut(s) 955
Cac8I GCNNGC 3 cut(s) 175, 721, 927
CciI TCATGA 2 cut(s) 193, 733
Cfr10I RCCGGY 1 cut(s) 567
Cfr13I GGNCC 2 cut(s) 62, 691
Csp6I GTAC 2 cut(s) 446, 742
CspCI CAANNNNNGTGG 2 cut(s) 575, 610
CviAII CATG 6 cut(s) 58, 194, 388, 734, 871, 926
CviQI GTAC 2 cut(s) 446, 742
DpnI GATC 4 cut(s) 339, 366, 789, 824
DpnII GATC 4 cut(s) 337, 364, 787, 822
Ecl136II GAGCTC 1 cut(s) 275
Eco24I GRGCYC 2 cut(s) 189, 277
Eco47I GGWCC 1 cut(s) 691
Eco53kI GAGCTC 1 cut(s) 275
EcoICRI GAGCTC 1 cut(s) 275
EcoNI CCTNNNNNAGG 1 cut(s) 845
EcoT22I ATGCAT 2 cut(s) 93, 927
EcoT38I GRGCYC 2 cut(s) 189, 277
FaeI CATG 6 cut(s) 61, 197, 391, 737, 874, 929
FaqI GGGAC 2 cut(s) 118, 395
FatI CATG 6 cut(s) 57, 193, 387, 733, 870, 925
FauNDI CATATG 1 cut(s) 295
FbaI TGATCA 2 cut(s) 364, 822
Fnu4HI GCNGC 4 cut(s) 37, 40, 507, 962
FokI GGATG 5 cut(s) 246, 447, 671, 865, 941
FriOI GRGCYC 2 cut(s) 189, 277
Fsp4HI GCNGC 4 cut(s) 37, 40, 507, 962
FspBI CTAG 4 cut(s) 11, 315, 491, 842
GluI GCNGC 4 cut(s) 37, 40, 507, 962
GsaI CCCAGC 1 cut(s) 459
GsuI CTGGAG 1 cut(s) 615
HaeIII GGCC 1 cut(s) 64
HapII CCGG 2 cut(s) 245, 568
Hin1II CATG 6 cut(s) 61, 197, 391, 737, 874, 929
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 4 cut(s) 106, 253, 529, 857
HpaII CCGG 2 cut(s) 245, 568
Hpy166II GTNNAC 3 cut(s) 694, 742, 856
Hpy188I TCNGA 2 cut(s) 111, 519
Hpy188III TCNNGA 7 cut(s) 131, 194, 356, 406, 632, 734, 763
Hpy8I GTNNAC 3 cut(s) 694, 742, 856
HpyAV CCTTC 2 cut(s) 175, 200
HpyCH4III ACNGT 4 cut(s) 450, 481, 705, 752
HpyCH4V TGCA 6 cut(s) 91, 237, 484, 701, 713, 925
HpyF10VI GCNNNNNNNGC 2 cut(s) 426, 935
Hsp92II CATG 6 cut(s) 61, 197, 391, 737, 874, 929
Ksp22I TGATCA 2 cut(s) 364, 822
Kzo9I GATC 4 cut(s) 337, 364, 787, 822
LmnI GCTCC 2 cut(s) 47, 192
Lsp1109I GCAGC 4 cut(s) 48, 51, 518, 973
LweI GCATC 5 cut(s) 78, 224, 448, 469, 649
MaeI CTAG 4 cut(s) 11, 315, 491, 842
MaeIII GTNAC 1 cut(s) 53
MalI GATC 4 cut(s) 339, 366, 789, 824
MboI GATC 4 cut(s) 337, 364, 787, 822
MboII GAAGA 3 cut(s) 146, 344, 410
MfeI CAATTG 1 cut(s) 592
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 4 cut(s) 83, 155, 189, 277
MluCI AATT 7 cut(s) 29, 73, 261, 592, 902, 939, 977
MlyI GAGTC 2 cut(s) 100, 851
MmeI TCCRAC 1 cut(s) 906
MnlI CCTC 9 cut(s) 18, 142, 207, 210, 224, 474, 609, 681, 956
Mph1103I ATGCAT 2 cut(s) 93, 927
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 3 cut(s) 141, 803, 942
MslI CAYNNNNRTG 3 cut(s) 86, 360, 893
MspI CCGG 2 cut(s) 245, 568
MspR9I CCNGG 1 cut(s) 245
MunI CAATTG 1 cut(s) 592
Mva1269I GAATGC 1 cut(s) 222
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 2 cut(s) 426, 935
NciI CCSGG 1 cut(s) 245
NdeI CATATG 1 cut(s) 295
NdeII GATC 4 cut(s) 337, 364, 787, 822
NlaIII CATG 6 cut(s) 61, 197, 391, 737, 874, 929
NlaIV GGNNCC 3 cut(s) 63, 188, 692
NsiI ATGCAT 2 cut(s) 93, 927
NspI RCATGY 2 cut(s) 874, 929
PaeI GCATGC 1 cut(s) 929
PagI TCATGA 2 cut(s) 193, 733
PciI ACATGT 1 cut(s) 870
PctI GAATGC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 2 cut(s) 253, 529
PkrI GCNGC 4 cut(s) 38, 41, 508, 963
PleI GAGTC 2 cut(s) 100, 851
PpsI GAGTC 2 cut(s) 100, 851
PscI ACATGT 1 cut(s) 870
Psp124BI GAGCTC 1 cut(s) 277
PspFI CCCAGC 1 cut(s) 455
PspN4I GGNNCC 3 cut(s) 63, 188, 692
PspPI GGNCC 2 cut(s) 62, 691
PsuI RGATCY 1 cut(s) 337
RsaI GTAC 2 cut(s) 447, 743
RsaNI GTAC 2 cut(s) 446, 742
RseI CAYNNNNRTG 3 cut(s) 86, 360, 893
SacI GAGCTC 1 cut(s) 277
SaqAI TTAA 3 cut(s) 141, 803, 942
SatI GCNGC 4 cut(s) 37, 40, 507, 962
Sau3AI GATC 4 cut(s) 337, 364, 787, 822
Sau96I GGNCC 2 cut(s) 62, 691
SchI GAGTC 2 cut(s) 100, 851
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 4 cut(s) 83, 155, 189, 277
SfaNI GCATC 5 cut(s) 78, 224, 448, 469, 649
SinI GGWCC 1 cut(s) 691
SmiMI CAYNNNNRTG 3 cut(s) 86, 360, 893
SmlI CTYRAG 1 cut(s) 600
SmoI CTYRAG 1 cut(s) 600
SphI GCATGC 1 cut(s) 929
Sse9I AATT 7 cut(s) 29, 73, 261, 592, 902, 939, 977
SspMI CTAG 4 cut(s) 11, 315, 491, 842
SstI GAGCTC 1 cut(s) 277
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 4 cut(s) 450, 481, 705, 752
TaqI TCGA 2 cut(s) 707, 948
TasI AATT 7 cut(s) 29, 73, 261, 592, 902, 939, 977
TatI WGTACW 2 cut(s) 445, 741
TfiI GAWTC 2 cut(s) 253, 529
Tru1I TTAA 3 cut(s) 141, 803, 942
Tru9I TTAA 3 cut(s) 141, 803, 942
TscAI CASTG 2 cut(s) 486, 656
TseI GCWGC 4 cut(s) 36, 39, 506, 961
TspDTI ATGAA 8 cut(s) 182, 210, 338, 404, 503, 722, 750, 896
TspGWI ACGGA 1 cut(s) 905
TspRI CASTG 2 cut(s) 486, 656
VpaK11BI GGWCC 1 cut(s) 691
XagI CCTNNNNNAGG 1 cut(s) 845
XapI RAATTY 2 cut(s) 73, 902
XceI RCATGY 2 cut(s) 874, 929
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 4 cut(s) 11, 315, 491, 842
Zsp2I ATGCAT 2 cut(s) 93, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.