Rh3AG273000
ERF Family

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000442
Physical Location & Seq
Reverse (-)
31205848 .. 31209291
3444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG273000.1

Sequence Viewer

Length: 201 bp
ATGGCAGCAGAGGAAACTGGTAAATGCTCTGAAGCCTATCCAATGAAAGGTGGAGATGGCCCCAGCAACTATGCCAAGAACTCCATCTACCAGAGCAGTGATGTTGGTGATTGTGGTGGGGATTGGGGCGTGGATTTGGAGGAGGGTGAGTCGGGTGTGAAGAGTGGTGTGGAGGCTCTGATTTTCCGAGGAAATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

66

Amino Acids

6.88

Weight (kDa)

4.31

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 47
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 119, 158
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 50, 92
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 187
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 17
BseYI CCCAGC 1 cut(s) 62
BshFI GGCC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 47
BsnI GGCC 1 cut(s) 60
BspANI GGCC 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 61
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 59
CviJI RGCY 3 cut(s) 35, 60, 176
CviKI_1 RGCY 3 cut(s) 35, 60, 176
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 51
FaiI YATR 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 66
HaeIII GGCC 1 cut(s) 60
HinfI GANTC 1 cut(s) 149
HphI GGTGA 2 cut(s) 119, 158
Hpy188I TCNGA 3 cut(s) 31, 180, 188
LpnPI CCDG 3 cut(s) 3, 76, 104
Lsp1109I GCAGC 1 cut(s) 17
MboII GAAGA 1 cut(s) 172
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 5 cut(s) 4, 133, 136, 166, 182
NlaIV GGNNCC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PspFI CCCAGC 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 59
PsrI GAACNNNNNNTAC 2 cut(s) 71, 103
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 1 cut(s) 158
SetI ASST 2 cut(s) 52, 200
SgeI CNNG 6 cut(s) 30, 75, 88, 103, 142, 165
TscAI CASTG 1 cut(s) 103
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 59
TspRI CASTG 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.