Rroxscaffold_2G00080240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000442
Physical Location & Seq
Forward (+)
3177651 .. 3180642
2992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00080240.1

Sequence Viewer

Length: 729 bp
ATGGTATGGAGGATGAGGAGTGGCATTCAAGGTGGATGCACAGACCCAGAACAGATTCCCGTAATTCGTCGCAGAGCTTACTTGCCAGATGAGACATATGTAGTAGGGAAATACCCTAGCTACTTATTTTCAGTAAAAGATCTGGCAGTTCATCTTCATGAGAATGATCAAATGAGTTCAAGGGACAGCATAAAGTTTGAAGATTTCAAGATTTACACGAGCCTATTGAGCAACACAAGGCATCTTGTACTGTTGGCCGGCCATCCTCATCTACAAACAACAGTGCAAGAGGTAGCATACATACCAGCAGCACTTCATCAAATGGATTTGATTCCTACCAAACAAAATGCCCGATACCGATACCGATTCCGGCACTTCCCACTTCCCCACCCCAATTGCCATCAAGTTCCACTCGCATTGGCATTTACAACTCCAAAGAATCTTCTACACCAGTGGCAGGATGCTTATAAGTGTGTGTGTGTCAACAGGAGAGTCCACATTGCACGGTCAATTGCAAGTGCTGGCAAAGAGTTTCATGATGTGTACAACTATCGTAGCTCATTCAAGACAACAGGATACGACGATCGTGATCCCATAGATGAGTTAAGATATTACAGCAATGTGATCAAGCACTTAGATAATGAGGTAAGAAAAAATTTAAAACTTTCTAATTATATGATAGAAAGTGGTTGTGATTATATTGCTGATTTTTTTAATTTTTTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

28.37

Weight (kDa)

8.86

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AclWI GGATC 1 cut(s) 584
AcoI YGGCCR 2 cut(s) 255, 259
AcsI RAATTY 1 cut(s) 655
AfaI GTAC 2 cut(s) 249, 545
AfiI CCNNNNNNNGG 1 cut(s) 457
AgsI TTSAA 5 cut(s) 29, 180, 200, 208, 565
AluBI AGCT 3 cut(s) 77, 120, 558
AluI AGCT 3 cut(s) 77, 120, 558
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 584
AoxI GGCC 2 cut(s) 255, 259
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 1 cut(s) 655
Asp700I GAANNNNTTC 1 cut(s) 54
BauI CACGAG 1 cut(s) 217
BbvI GCAGC 1 cut(s) 320
BccI CCATC 2 cut(s) 270, 408
BciVI GTATCC 1 cut(s) 569
BclI TGATCA 2 cut(s) 166, 624
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 117
BfuI GTATCC 1 cut(s) 569
BglII AGATCT 1 cut(s) 139
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
BmsI GCATC 3 cut(s) 26, 250, 451
BsaBI GATNNNNATC 1 cut(s) 588
Bsc4I CCNNNNNNNGG 1 cut(s) 457
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 451
Bse3DI GCAATG 2 cut(s) 498, 625
Bse8I GATNNNNATC 1 cut(s) 588
BseGI GGATG 4 cut(s) 18, 41, 262, 466
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 1 cut(s) 457
BseMI GCAATG 2 cut(s) 498, 625
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 320
Bsh1285I CGRYCG 1 cut(s) 586
BshFI GGCC 2 cut(s) 257, 261
BsiEI CGRYCG 1 cut(s) 586
BsiSI CCGG 2 cut(s) 258, 370
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 457
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 2 cut(s) 257, 261
Bsp1407I TGTACA 1 cut(s) 543
Bsp143I GATC 5 cut(s) 139, 166, 583, 589, 624
BspANI GGCC 2 cut(s) 257, 261
BspHI TCATGA 2 cut(s) 157, 535
BspPI GGATC 1 cut(s) 584
BsrDI GCAATG 2 cut(s) 498, 625
BsrFI RCCGGY 1 cut(s) 257
BsrGI TGTACA 1 cut(s) 543
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 1 cut(s) 257
BssMI GATC 5 cut(s) 139, 166, 583, 589, 624
BssSI CACGAG 1 cut(s) 217
Bst2BI CACGAG 1 cut(s) 217
Bst4CI ACNGT 3 cut(s) 252, 283, 507
BstAUI TGTACA 1 cut(s) 543
BstC8I GCNNGC 2 cut(s) 259, 523
BstDEI CTNAG 1 cut(s) 634
BstF5I GGATG 4 cut(s) 18, 41, 262, 466
BstKTI GATC 5 cut(s) 142, 169, 586, 592, 627
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 5 cut(s) 139, 166, 583, 589, 624
BstMCI CGRYCG 1 cut(s) 586
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 320
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuI GTATCC 1 cut(s) 569
BsuRI GGCC 2 cut(s) 257, 261
BtsCI GGATG 4 cut(s) 18, 41, 262, 466
BtsIMutI CAGTG 2 cut(s) 288, 458
Cac8I GCNNGC 2 cut(s) 259, 523
CciI TCATGA 2 cut(s) 157, 535
Cfr10I RCCGGY 1 cut(s) 257
Csp6I GTAC 2 cut(s) 248, 544
CspCI CAANNNNNGTGG 4 cut(s) 377, 399, 412, 434
CviAII CATG 2 cut(s) 158, 536
CviJI RGCY 6 cut(s) 77, 120, 222, 257, 261, 558
CviKI_1 RGCY 6 cut(s) 77, 120, 222, 257, 261, 558
CviQI GTAC 2 cut(s) 248, 544
DdeI CTNAG 1 cut(s) 634
DpnI GATC 5 cut(s) 141, 168, 585, 591, 626
DpnII GATC 5 cut(s) 139, 166, 583, 589, 624
DraI TTTAAA 1 cut(s) 660
EaeI YGGCCR 2 cut(s) 255, 259
FaeI CATG 2 cut(s) 161, 539
FaqI GGGAC 1 cut(s) 197
FatI CATG 2 cut(s) 157, 535
FauNDI CATATG 1 cut(s) 97
FbaI TGATCA 2 cut(s) 166, 624
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 4 cut(s) 25, 48, 249, 473
FseI GGCCGGCC 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 1 cut(s) 117
GluI GCNGC 1 cut(s) 309
HaeIII GGCC 2 cut(s) 257, 261
HapII CCGG 2 cut(s) 258, 370
Hin1II CATG 2 cut(s) 161, 539
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 5 cut(s) 55, 331, 366, 439, 492
HpaII CCGG 2 cut(s) 258, 370
Hpy166II GTNNAC 3 cut(s) 484, 496, 544
Hpy188III TCNNGA 5 cut(s) 158, 208, 536, 565, 587
Hpy8I GTNNAC 3 cut(s) 484, 496, 544
Hpy99I CGWCG 2 cut(s) 72, 584
HpyCH4III ACNGT 3 cut(s) 252, 283, 507
HpyCH4V TGCA 4 cut(s) 39, 286, 503, 515
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
HpyF3I CTNAG 1 cut(s) 634
Hsp92II CATG 2 cut(s) 161, 539
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
Ksp22I TGATCA 2 cut(s) 166, 624
Kzo9I GATC 5 cut(s) 139, 166, 583, 589, 624
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 3 cut(s) 26, 250, 451
MaeI CTAG 1 cut(s) 117
MalI GATC 5 cut(s) 141, 168, 585, 591, 626
MboI GATC 5 cut(s) 139, 166, 583, 589, 624
MboII GAAGA 3 cut(s) 146, 212, 434
MfeI CAATTG 2 cut(s) 394, 510
MflI RGATCY 1 cut(s) 139
MluCI AATT 6 cut(s) 63, 394, 510, 655, 670, 715
MlyI GAGTC 1 cut(s) 501
MnlI CCTC 5 cut(s) 3, 9, 276, 283, 637
MroNI GCCGGC 1 cut(s) 257
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 3 cut(s) 605, 659, 714
MslI CAYNNNNRTG 2 cut(s) 156, 162
MspI CCGG 2 cut(s) 258, 370
MunI CAATTG 2 cut(s) 394, 510
Mva1269I GAATGC 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 228
NaeI GCCGGC 1 cut(s) 259
NdeI CATATG 1 cut(s) 97
NdeII GATC 5 cut(s) 139, 166, 583, 589, 624
NgoMIV GCCGGC 1 cut(s) 257
NlaIII CATG 2 cut(s) 161, 539
PagI TCATGA 2 cut(s) 157, 535
PctI GAATGC 1 cut(s) 24
PdiI GCCGGC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 4 cut(s) 55, 331, 366, 439
PkrI GCNGC 1 cut(s) 310
Ple19I CGATCG 1 cut(s) 586
PleI GAGTC 1 cut(s) 500
PpsI GAGTC 1 cut(s) 500
PsiI TTATAA 1 cut(s) 468
PsuI RGATCY 1 cut(s) 139
PvuI CGATCG 1 cut(s) 586
RigI GGCCGGCC 1 cut(s) 261
RsaI GTAC 2 cut(s) 249, 545
RsaNI GTAC 2 cut(s) 248, 544
RseI CAYNNNNRTG 2 cut(s) 156, 162
SaqAI TTAA 3 cut(s) 605, 659, 714
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 5 cut(s) 139, 166, 583, 589, 624
SchI GAGTC 1 cut(s) 501
SetI ASST 6 cut(s) 34, 79, 122, 294, 560, 648
SfaNI GCATC 3 cut(s) 26, 250, 451
SmiMI CAYNNNNRTG 2 cut(s) 156, 162
Sse9I AATT 6 cut(s) 63, 394, 510, 655, 670, 715
SspMI CTAG 1 cut(s) 117
TaaI ACNGT 3 cut(s) 252, 283, 507
TasI AATT 6 cut(s) 63, 394, 510, 655, 670, 715
TatI WGTACW 2 cut(s) 247, 543
TfiI GAWTC 4 cut(s) 55, 331, 366, 439
Tru1I TTAA 3 cut(s) 605, 659, 714
Tru9I TTAA 3 cut(s) 605, 659, 714
TscAI CASTG 2 cut(s) 288, 458
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 4 cut(s) 140, 146, 305, 524
TspRI CASTG 2 cut(s) 288, 458
XapI RAATTY 1 cut(s) 655
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.