RchiOBHm_Chr2g0171801

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000442
Physical Location & Seq
Forward (+)
85360985 .. 85364035
3051 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53917

Sequence Viewer

Length: 555 bp
ATGAGGTTATTCGCCATTCCTGAAAATCCGAATCACAAGCCCAAACATCCAAATGAAAATAGGAAGCGCCACTTCCCAAAAGTGATCGACGACCATCAAGTTAATCCATCTCAAGCAGCAACAGATCCAAATTTAATGAAATGGGAGAAAGCTTATGATGTGATGGTGAAGGAGACAAGGCAAGTGAACATTAAGCAATCCATTTCAGGACTTGCCACTGAGTTTCATCAAATTCACAAAGATGGAATGATGCGCAAAACAAAAACAGCTGAAGGATATCAAGATAAGGATGCTGCTGATGAGGTGCATTACTTTTGCAATACAATGAAGCACATTTGGAAAAAGTTTCCCCAGGGTTTACTACACTTGCCGCATTGCATCGCATGTCGCCAACAATTCCGACATAAATGTTTTGATTTTTCTGGCGCTATGATGGATACGCTTCAGGAATCATTTCTCTTAACTTTTTCAAGGACAGCAGGATTTCTTTTGAGGAGGGCGACCTTGTGTTTGGGGAGACTAGTGAAGAAGACTAATGGTTATCAGTTTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

21.54

Weight (kDa)

9.58

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 254
AciI CCGC 1 cut(s) 371
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 2 cut(s) 130, 231
AcuI CTGAAG 2 cut(s) 291, 428
AgsI TTSAA 2 cut(s) 471, 551
AhlI ACTAGT 1 cut(s) 520
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 2 cut(s) 152, 269
AluI AGCT 2 cut(s) 152, 269
Alw26I GTCTC 2 cut(s) 167, 511
AlwI GGATC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 116, 293
ApoI RAATTY 2 cut(s) 130, 231
ArsI GACNNNNNNTTYG 2 cut(s) 493, 525
Asp700I GAANNNNTTC 1 cut(s) 453
AspLEI GCGC 3 cut(s) 69, 255, 428
AsuHPI GGTGA 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 536
BbvI GCAGC 2 cut(s) 128, 280
BccI CCATC 5 cut(s) 102, 115, 157, 236, 427
BciT130I CCWGG 1 cut(s) 353
BciVI GTATCC 1 cut(s) 430
BcoDI GTCTC 2 cut(s) 167, 511
BcuI ACTAGT 1 cut(s) 520
BfaI CTAG 1 cut(s) 521
BfoI RGCGCY 2 cut(s) 70, 429
BfuI GTATCC 1 cut(s) 430
BisI GCNGC 3 cut(s) 117, 294, 371
BlsI GCNGC 3 cut(s) 118, 295, 372
Bme1390I CCNGG 1 cut(s) 353
BmrFI CCNGG 1 cut(s) 353
BmsI GCATC 3 cut(s) 240, 280, 387
BpiI GAAGAC 1 cut(s) 536
BpuEI CTTGAG 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 351, 352
Bse3DI GCAATG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 2 cut(s) 351, 352
BseGI GGATG 2 cut(s) 46, 295
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 508
BseXI GCAGC 2 cut(s) 128, 280
BsmAI GTCTC 2 cut(s) 167, 511
Bsp143I GATC 2 cut(s) 84, 124
BspACI CCGC 1 cut(s) 371
BspCNI CTCAG 1 cut(s) 211
BspPI GGATC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 373
BssECI CCNNGG 2 cut(s) 351, 352
BssMI GATC 2 cut(s) 84, 124
Bst2UI CCWGG 1 cut(s) 353
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 46, 295
BstH2I RGCGCY 2 cut(s) 70, 429
BstHHI GCGC 3 cut(s) 69, 255, 428
BstKTI GATC 2 cut(s) 87, 127
BstMAI GTCTC 2 cut(s) 167, 511
BstMBI GATC 2 cut(s) 84, 124
BstNI CCWGG 1 cut(s) 353
BstNSI RCATGY 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 351
BstV1I GCAGC 2 cut(s) 128, 280
BstV2I GAAGAC 1 cut(s) 536
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuI GTATCC 1 cut(s) 430
BtgZI GCGATG 1 cut(s) 364
BtsCI GGATG 2 cut(s) 46, 295
BtsIMutI CAGTG 1 cut(s) 216
CfoI GCGC 3 cut(s) 69, 255, 428
CviAII CATG 1 cut(s) 384
CviJI RGCY 3 cut(s) 40, 152, 269
CviKI_1 RGCY 3 cut(s) 40, 152, 269
DdeI CTNAG 1 cut(s) 219
DpnI GATC 2 cut(s) 86, 126
DpnII GATC 2 cut(s) 84, 124
Eco32I GATATC 1 cut(s) 278
Eco57I CTGAAG 2 cut(s) 291, 428
EcoRII CCWGG 1 cut(s) 351
EcoRV GATATC 1 cut(s) 278
FaeI CATG 1 cut(s) 387
FaiI YATR 4 cut(s) 156, 385, 405, 431
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FatI CATG 1 cut(s) 383
Fnu4HI GCNGC 3 cut(s) 117, 294, 371
FokI GGATG 2 cut(s) 33, 302
Fsp4HI GCNGC 3 cut(s) 117, 294, 371
FspBI CTAG 1 cut(s) 521
FspI TGCGCA 1 cut(s) 254
GlaI GCGC 3 cut(s) 68, 254, 427
GluI GCNGC 3 cut(s) 117, 294, 371
HaeII RGCGCY 2 cut(s) 70, 429
HhaI GCGC 3 cut(s) 69, 255, 428
Hin1II CATG 1 cut(s) 387
Hin6I GCGC 3 cut(s) 67, 253, 426
HinP1I GCGC 3 cut(s) 67, 253, 426
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 2 cut(s) 31, 449
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 2 cut(s) 187, 359
Hpy188I TCNGA 2 cut(s) 30, 401
Hpy188III TCNNGA 4 cut(s) 20, 207, 281, 446
Hpy8I GTNNAC 2 cut(s) 187, 359
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 163, 266
HpyCH4V TGCA 3 cut(s) 307, 318, 378
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 1 cut(s) 387
HspAI GCGC 3 cut(s) 67, 253, 426
Kzo9I GATC 2 cut(s) 84, 124
LpnPI CCDG 7 cut(s) 33, 192, 338, 365, 408, 431, 465
Lsp1109I GCAGC 2 cut(s) 128, 280
LweI GCATC 3 cut(s) 240, 280, 387
MaeI CTAG 1 cut(s) 521
MalI GATC 2 cut(s) 86, 126
MboI GATC 2 cut(s) 84, 124
MboII GAAGA 2 cut(s) 538, 541
MflI RGATCY 1 cut(s) 124
MluCI AATT 3 cut(s) 130, 231, 395
MmeI TCCRAC 1 cut(s) 424
MnlI CCTC 3 cut(s) 295, 486, 489
MroXI GAANNNNTTC 1 cut(s) 453
MseI TTAA 4 cut(s) 102, 134, 192, 461
MslI CAYNNNNRTG 2 cut(s) 51, 240
MspA1I CMGCKG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 353
MvaI CCWGG 1 cut(s) 353
NdeII GATC 2 cut(s) 84, 124
NlaIII CATG 1 cut(s) 387
NsbI TGCGCA 1 cut(s) 254
NspI RCATGY 1 cut(s) 387
PasI CCCWGGG 1 cut(s) 352
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 2 cut(s) 31, 449
PkrI GCNGC 3 cut(s) 118, 295, 372
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PsuI RGATCY 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 269
RseI CAYNNNNRTG 2 cut(s) 51, 240
SaqAI TTAA 4 cut(s) 102, 134, 192, 461
SatI GCNGC 3 cut(s) 117, 294, 371
Sau3AI GATC 2 cut(s) 84, 124
ScrFI CCNGG 1 cut(s) 353
SetI ASST 5 cut(s) 8, 154, 271, 306, 506
SfaNI GCATC 3 cut(s) 240, 280, 387
SmiMI CAYNNNNRTG 2 cut(s) 51, 240
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
SpeI ACTAGT 1 cut(s) 520
Sse9I AATT 3 cut(s) 130, 231, 395
SsiI CCGC 1 cut(s) 371
SspMI CTAG 1 cut(s) 521
StyD4I CCNGG 1 cut(s) 351
TaqI TCGA 1 cut(s) 87
TasI AATT 3 cut(s) 130, 231, 395
TauI GCSGC 1 cut(s) 373
TfiI GAWTC 2 cut(s) 31, 449
Tru1I TTAA 4 cut(s) 102, 134, 192, 461
Tru9I TTAA 4 cut(s) 102, 134, 192, 461
TscAI CASTG 1 cut(s) 223
TseI GCWGC 2 cut(s) 116, 293
TspDTI ATGAA 4 cut(s) 69, 152, 215, 341
TspRI CASTG 1 cut(s) 223
XapI RAATTY 2 cut(s) 130, 231
XceI RCATGY 1 cut(s) 387
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.