RLG00000027622

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000442
Physical Location & Seq
Forward (+)
13250709 .. 13251140
432 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027622

Sequence Viewer

Length: 348 bp
ATGGTCGATATTGGCAGCAGTGTGAGTGATCTGGGATGTGACCGAATCTGGTTTGGTGGAGACTTAAAGGATCCTGCTTTTGGTGGCGGCGCTAGGGTCGCGGCTTTGACATGGGCGGTGACGGTAGCTAGGGCTTGGGACGAGGAATGTTTTGTCTTCCTTGCAGATACAATGGTGGCTTGTCTTACTGGATGGCCGCTGGCAGAGGAAGATGACGTTGACACATCCGTGTTGGGTAGTAGGGATATCCGCGGTGGCTGCGGGGTGTTTCCATCGACTGCTAGGGTTTCAGGAAGGTTGAAATGTTGGGCTCCACTTCAAGCTTTGGGCTTAGGCTGGGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.15

Weight (kDa)

4.33

Isoelectric Point (pI)

32.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 101, 252
AciI CCGC 7 cut(s) 87, 101, 116, 197, 250, 252, 261
AclWI GGATC 2 cut(s) 65, 78
AcoI YGGCCR 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 2 cut(s) 301, 320
AleI CACNNNNGTG 1 cut(s) 227
AluBI AGCT 2 cut(s) 128, 323
AluI AGCT 2 cut(s) 128, 323
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 2 cut(s) 65, 78
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 2 cut(s) 15, 258
AspLEI GCGC 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 130
BaeI ACNNNNGTAYC 2 cut(s) 159, 192
BamHI GGATCC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 27, 245
BccI CCATC 2 cut(s) 186, 280
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 3 cut(s) 93, 129, 282
BfoI RGCGCY 1 cut(s) 93
BisI GCNGC 5 cut(s) 16, 88, 102, 197, 259
BlsI GCNGC 5 cut(s) 17, 89, 103, 198, 260
BmiI GGNNCC 2 cut(s) 72, 312
BpiI GAAGAC 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 331
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 3 cut(s) 41, 197, 224
BseLI CCNNNNNNNGG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 2 cut(s) 27, 245
BseYI CCCAGC 1 cut(s) 336
Bsh1236I CGCG 2 cut(s) 101, 252
BshFI GGCC 1 cut(s) 196
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 28, 70
BspACI CCGC 7 cut(s) 87, 101, 116, 197, 250, 252, 261
BspANI GGCC 1 cut(s) 196
BspFNI CGCG 2 cut(s) 101, 252
BspLI GGNNCC 2 cut(s) 72, 312
BspPI GGATC 2 cut(s) 65, 78
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 28, 70
Bst4CI ACNGT 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 331
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 3 cut(s) 41, 197, 224
BstFNI CGCG 2 cut(s) 101, 252
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 2 cut(s) 31, 73
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 2 cut(s) 28, 70
BstMWI GCNNNNNNNGC 2 cut(s) 98, 258
BstUI CGCG 2 cut(s) 101, 252
BstV1I GCAGC 2 cut(s) 27, 245
BstV2I GAAGAC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 1 cut(s) 196
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 3 cut(s) 41, 197, 224
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 201
CfoI GCGC 1 cut(s) 92
Cfr42I CCGCGG 1 cut(s) 253
CviAII CATG 1 cut(s) 111
DdeI CTNAG 1 cut(s) 331
DpnI GATC 2 cut(s) 30, 72
DpnII GATC 2 cut(s) 28, 70
EaeI YGGCCR 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 313
Eco32I GATATC 1 cut(s) 247
EcoRV GATATC 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 313
FaeI CATG 1 cut(s) 114
FaiI YATR 1 cut(s) 112
FaqI GGGAC 1 cut(s) 152
FatI CATG 1 cut(s) 110
FauI CCCGC 1 cut(s) 254
Fnu4HI GCNGC 5 cut(s) 16, 88, 102, 197, 259
FokI GGATG 3 cut(s) 48, 204, 211
FriOI GRGCYC 1 cut(s) 313
Fsp4HI GCNGC 5 cut(s) 16, 88, 102, 197, 259
FspBI CTAG 3 cut(s) 93, 129, 282
GlaI GCGC 1 cut(s) 91
GluI GCNGC 5 cut(s) 16, 88, 102, 197, 259
GsaI CCCAGC 1 cut(s) 340
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 1 cut(s) 196
HhaI GCGC 1 cut(s) 92
Hin1II CATG 1 cut(s) 114
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 1 cut(s) 45
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 220
Hpy188III TCNNGA 1 cut(s) 291
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 288
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 258
HpyF3I CTNAG 1 cut(s) 331
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 1 cut(s) 114
HspAI GCGC 1 cut(s) 90
KspI CCGCGG 1 cut(s) 253
Kzo9I GATC 2 cut(s) 28, 70
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 7 cut(s) 17, 34, 87, 174, 185, 276, 322
Lsp1109I GCAGC 2 cut(s) 27, 245
MaeI CTAG 3 cut(s) 93, 129, 282
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 2 cut(s) 38, 118
MalI GATC 2 cut(s) 30, 72
MboI GATC 2 cut(s) 28, 70
MboII GAAGA 2 cut(s) 148, 221
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 313
MnlI CCTC 2 cut(s) 136, 199
MseI TTAA 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 227
MspA1I CMGCKG 2 cut(s) 199, 252
MvnI CGCG 2 cut(s) 101, 252
MwoI GCNNNNNNNGC 2 cut(s) 98, 258
NdeII GATC 2 cut(s) 28, 70
NlaIII CATG 1 cut(s) 114
NlaIV GGNNCC 2 cut(s) 72, 312
NmuCI GTSAC 2 cut(s) 38, 118
OliI CACNNNNGTG 1 cut(s) 227
PfeI GAWTC 1 cut(s) 45
PkrI GCNGC 5 cut(s) 17, 89, 103, 198, 260
PspFI CCCAGC 1 cut(s) 336
PspN4I GGNNCC 2 cut(s) 72, 312
PsuI RGATCY 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 227
SacII CCGCGG 1 cut(s) 253
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 5 cut(s) 16, 88, 102, 197, 259
Sau3AI GATC 2 cut(s) 28, 70
SduI GDGCHC 1 cut(s) 313
SetI ASST 4 cut(s) 130, 219, 299, 325
Sfr303I CCGCGG 1 cut(s) 253
SgrBI CCGCGG 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 227
SsiI CCGC 7 cut(s) 87, 101, 116, 197, 250, 252, 261
SspMI CTAG 3 cut(s) 93, 129, 282
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 1 cut(s) 219
TaqI TCGA 2 cut(s) 6, 275
TaqII GACCGA 1 cut(s) 57
TauI GCSGC 3 cut(s) 90, 104, 199
TfiI GAWTC 1 cut(s) 45
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 2 cut(s) 38, 118
TseI GCWGC 2 cut(s) 15, 258
Tsp45I GTSAC 2 cut(s) 38, 118
TspGWI ACGGA 1 cut(s) 217
TspRI CASTG 1 cut(s) 25
XspI CTAG 3 cut(s) 93, 129, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.