Rw2G052280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000442
Physical Location & Seq
Forward (+)
80228250 .. 80230181
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G052280.1

Sequence Viewer

Length: 975 bp
ATGGGATTTCTAGTTGGCATTTTGAGGAAATTGGGCAGCAGCTCCATTGTCAGTAACATGGGGCCAAAGTTGAATTTGGGCACAAAGATGCATTCATTTGGTACTCTGACCAGAAAAAACATTTTCCTGGAAGATATTAAGCATGAGGGGACACTGGAGCAAAAGAAAGCTTGCTTAAAAGAGCTCCTTCATGAAATGGTATGGAGGATGAGGAGTGGCATTCAAGGTGGATGCACAGACCCAGAACAGATTCCCGTAATTCATCGTAGAGCTTACTTGCCAGACGAGACATATGTAGTAGGGAAATACCCTAGCTACTTATTTTCAGTAAAAGATCTGGCAGTTCATCTTCATGAGAATGATCAAATGAGTTCAAGGGACAGCATAAAGTTTGAAGATTTCAAGATTTACACGAGCCTATTGAACAACACAAGGCATCTTGTACTGTTGGCCGGGCATCCTCATCTACAAACAACAGTGCAAGAGTTAGCATACATACCAGCAGCACTTCATCAAATGGATTTGATTCCTGCCAAACAAAATGCCCGATACCGATACCGATACCGGCACTTCCCACTTCCCCACCCCAATTGCCGTCAAGTTCCACTTGCATTGGCATTTACAACTCCAAAGAATCTTCTACACCAGTGGCAGGATGCTTATAAGTGTGTGTGTGTCAACAGGAGAGTCCACATTGCACGGTCAATTGCAAGTGCTGGCAAAGAGTTTCATGATGTGTACAACTATCGTAGCTCATTCAAGACAAAAGGATACGACGATCGTGATCCCATAGATGAGTTAAGATATTACAGCAATGTGATCAAGCACTTAGATAATGAGCCAGTTGACTCCTTGCATGACATGTTTCCATACAACACCATGGAGATGTTCAAATTCCATTGGTGCTATGATAGACATGCTATGGGAACAATTAACCTCGAAAGCATCCAGCAGCAGGATCGTCTTTATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

37.84

Weight (kDa)

8.96

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
AclWI GGATC 2 cut(s) 779, 966
AcoI YGGCCR 1 cut(s) 450
AcsI RAATTY 2 cut(s) 73, 893
AfaI GTAC 3 cut(s) 103, 444, 740
AfiI CCNNNNNNNGG 2 cut(s) 652, 955
AflIII ACRYGT 1 cut(s) 861
AgsI TTSAA 8 cut(s) 73, 224, 375, 395, 403, 424, 760, 892
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 6 cut(s) 42, 170, 184, 272, 315, 753
AluI AGCT 6 cut(s) 42, 170, 184, 272, 315, 753
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 2 cut(s) 779, 966
AoxI GGCC 2 cut(s) 62, 450
ApeKI GCWGC 4 cut(s) 36, 39, 503, 952
ApoI RAATTY 2 cut(s) 73, 893
Asp700I GAANNNNTTC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 62
AsuC2I CCSGG 1 cut(s) 454
BaeGI GKGCMC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 186
BauI CACGAG 1 cut(s) 412
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 4 cut(s) 48, 51, 515, 964
BceAI ACGGC 1 cut(s) 579
BcgI CGANNNNNNTGC 2 cut(s) 941, 975
BciT130I CCWGG 1 cut(s) 128
BciVI GTATCC 1 cut(s) 764
BclI TGATCA 2 cut(s) 361, 819
BcnI CCSGG 1 cut(s) 454
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 2 cut(s) 11, 312
BfuI GTATCC 1 cut(s) 764
BglII AGATCT 1 cut(s) 334
BisI GCNGC 4 cut(s) 37, 40, 504, 953
BlsI GCNGC 4 cut(s) 38, 41, 505, 954
Bme1390I CCNGG 2 cut(s) 128, 454
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 2 cut(s) 128, 454
BmsI GCATC 6 cut(s) 78, 221, 445, 466, 646, 954
BpmI CTGGAG 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 454
BsaBI GATNNNNATC 1 cut(s) 783
BsaJI CCNNGG 1 cut(s) 879
Bsc4I CCNNNNNNNGG 2 cut(s) 652, 955
Bse118I RCCGGY 1 cut(s) 564
Bse1I ACTGG 3 cut(s) 159, 646, 842
Bse3DI GCAATG 2 cut(s) 693, 820
Bse8I GATNNNNATC 1 cut(s) 783
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 879
BseGI GGATG 5 cut(s) 213, 236, 457, 661, 945
BseJI GATNNNNATC 1 cut(s) 783
BseLI CCNNNNNNNGG 2 cut(s) 652, 955
BseMI GCAATG 2 cut(s) 693, 820
BseNI ACTGG 3 cut(s) 159, 646, 842
BseRI GAGGAG 1 cut(s) 226
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 4 cut(s) 48, 51, 515, 964
Bsh1285I CGRYCG 1 cut(s) 781
BshFI GGCC 2 cut(s) 64, 452
BsiEI CGRYCG 1 cut(s) 781
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 2 cut(s) 453, 565
BslFI GGGAC 2 cut(s) 163, 392
BslI CCNNNNNNNGG 2 cut(s) 652, 955
BsmAI GTCTC 1 cut(s) 281
BsmFI GGGAC 2 cut(s) 163, 392
BsmI GAATGC 2 cut(s) 91, 219
BsnI GGCC 2 cut(s) 64, 452
Bsp1286I GDGCHC 2 cut(s) 83, 186
Bsp1407I TGTACA 1 cut(s) 738
Bsp143I GATC 6 cut(s) 334, 361, 778, 784, 819, 958
Bsp19I CCATGG 1 cut(s) 879
BspANI GGCC 2 cut(s) 64, 452
BspHI TCATGA 3 cut(s) 190, 352, 730
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 2 cut(s) 779, 966
BsrDI GCAATG 2 cut(s) 693, 820
BsrFI RCCGGY 1 cut(s) 564
BsrGI TGTACA 1 cut(s) 738
BsrI ACTGG 3 cut(s) 159, 646, 842
BssAI RCCGGY 1 cut(s) 564
BssECI CCNNGG 1 cut(s) 879
BssMI GATC 6 cut(s) 334, 361, 778, 784, 819, 958
BssSI CACGAG 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 879
Bst2BI CACGAG 1 cut(s) 412
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 3 cut(s) 447, 478, 702
BstAUI TGTACA 1 cut(s) 738
BstC8I GCNNGC 2 cut(s) 172, 718
BstDEI CTNAG 1 cut(s) 829
BstDSI CCRYGG 1 cut(s) 879
BstF5I GGATG 5 cut(s) 213, 236, 457, 661, 945
BstKTI GATC 6 cut(s) 337, 364, 781, 787, 822, 961
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 6 cut(s) 334, 361, 778, 784, 819, 958
BstMCI CGRYCG 1 cut(s) 781
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 2 cut(s) 865, 920
BstSCI CCNGG 2 cut(s) 126, 452
BstSLI GKGCMC 1 cut(s) 83
BstV1I GCAGC 4 cut(s) 48, 51, 515, 964
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuI GTATCC 1 cut(s) 764
BsuRI GGCC 2 cut(s) 64, 452
BtgI CCRYGG 1 cut(s) 879
BtsCI GGATG 5 cut(s) 213, 236, 457, 661, 945
BtsIMutI CAGTG 3 cut(s) 152, 483, 653
Cac8I GCNNGC 2 cut(s) 172, 718
CciI TCATGA 3 cut(s) 190, 352, 730
Cfr10I RCCGGY 1 cut(s) 564
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 3 cut(s) 102, 443, 739
CspCI CAANNNNNGTGG 4 cut(s) 572, 594, 607, 629
CviAII CATG 9 cut(s) 58, 143, 191, 353, 731, 857, 862, 880, 917
CviQI GTAC 3 cut(s) 102, 443, 739
DdeI CTNAG 1 cut(s) 829
DpnI GATC 6 cut(s) 336, 363, 780, 786, 821, 960
DpnII GATC 6 cut(s) 334, 361, 778, 784, 819, 958
EaeI YGGCCR 1 cut(s) 450
Ecl136II GAGCTC 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 879
Eco24I GRGCYC 1 cut(s) 186
Eco53kI GAGCTC 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 879
EcoT22I ATGCAT 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 879
FaeI CATG 9 cut(s) 61, 146, 194, 356, 734, 860, 865, 883, 920
FalI AAGNNNNNCTT 4 cut(s) 171, 203, 591, 623
FaqI GGGAC 2 cut(s) 163, 392
FatI CATG 9 cut(s) 57, 142, 190, 352, 730, 856, 861, 879, 916
FauNDI CATATG 1 cut(s) 292
FbaI TGATCA 2 cut(s) 361, 819
Fnu4HI GCNGC 4 cut(s) 37, 40, 504, 953
FokI GGATG 5 cut(s) 220, 243, 444, 668, 932
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 4 cut(s) 37, 40, 504, 953
FspBI CTAG 2 cut(s) 11, 312
GluI GCNGC 4 cut(s) 37, 40, 504, 953
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 2 cut(s) 64, 452
HapII CCGG 2 cut(s) 453, 565
Hin1II CATG 9 cut(s) 61, 146, 194, 356, 734, 860, 865, 883, 920
HincII GTYRAC 2 cut(s) 679, 847
HindII GTYRAC 2 cut(s) 679, 847
HindIII AAGCTT 1 cut(s) 168
HinfI GANTC 5 cut(s) 250, 526, 634, 687, 848
HpaII CCGG 2 cut(s) 453, 565
Hpy166II GTNNAC 4 cut(s) 679, 691, 739, 847
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 6 cut(s) 191, 353, 403, 731, 760, 782
Hpy8I GTNNAC 4 cut(s) 679, 691, 739, 847
Hpy99I CGWCG 1 cut(s) 779
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 3 cut(s) 447, 478, 702
HpyCH4V TGCA 7 cut(s) 91, 234, 481, 611, 698, 710, 856
HpyF3I CTNAG 1 cut(s) 829
Hsp92II CATG 9 cut(s) 61, 146, 194, 356, 734, 860, 865, 883, 920
Ksp22I TGATCA 2 cut(s) 361, 819
Kzo9I GATC 6 cut(s) 334, 361, 778, 784, 819, 958
LmnI GCTCC 3 cut(s) 47, 157, 189
Lsp1109I GCAGC 4 cut(s) 48, 51, 515, 964
LweI GCATC 6 cut(s) 78, 221, 445, 466, 646, 954
MaeI CTAG 2 cut(s) 11, 312
MaeIII GTNAC 1 cut(s) 53
MalI GATC 6 cut(s) 336, 363, 780, 786, 821, 960
MboI GATC 6 cut(s) 334, 361, 778, 784, 819, 958
MboII GAAGA 4 cut(s) 143, 341, 407, 629
MfeI CAATTG 2 cut(s) 589, 705
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 2 cut(s) 83, 186
MluCI AATT 7 cut(s) 29, 73, 258, 589, 705, 893, 930
MlyI GAGTC 2 cut(s) 696, 842
MnlI CCTC 6 cut(s) 18, 139, 198, 204, 471, 947
Mph1103I ATGCAT 1 cut(s) 93
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 4 cut(s) 138, 176, 800, 933
MslI CAYNNNNRTG 4 cut(s) 86, 351, 357, 884
MspI CCGG 2 cut(s) 453, 565
MspR9I CCNGG 2 cut(s) 128, 454
MunI CAATTG 2 cut(s) 589, 705
Mva1269I GAATGC 2 cut(s) 91, 219
MvaI CCWGG 1 cut(s) 128
NciI CCSGG 1 cut(s) 454
NcoI CCATGG 1 cut(s) 879
NdeI CATATG 1 cut(s) 292
NdeII GATC 6 cut(s) 334, 361, 778, 784, 819, 958
NlaIII CATG 9 cut(s) 61, 146, 194, 356, 734, 860, 865, 883, 920
NlaIV GGNNCC 1 cut(s) 63
NsiI ATGCAT 1 cut(s) 93
NspI RCATGY 2 cut(s) 865, 920
PagI TCATGA 3 cut(s) 190, 352, 730
PciI ACATGT 1 cut(s) 861
PctI GAATGC 2 cut(s) 91, 219
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 3 cut(s) 250, 526, 634
PfoI TCCNGGA 1 cut(s) 126
PkrI GCNGC 4 cut(s) 38, 41, 505, 954
Ple19I CGATCG 1 cut(s) 781
PleI GAGTC 2 cut(s) 695, 842
PpsI GAGTC 2 cut(s) 695, 842
PscI ACATGT 1 cut(s) 861
PsiI TTATAA 1 cut(s) 663
Psp124BI GAGCTC 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 62
PsuI RGATCY 1 cut(s) 334
PvuI CGATCG 1 cut(s) 781
RsaI GTAC 3 cut(s) 103, 444, 740
RsaNI GTAC 3 cut(s) 102, 443, 739
RseI CAYNNNNRTG 4 cut(s) 86, 351, 357, 884
SacI GAGCTC 1 cut(s) 186
SaqAI TTAA 4 cut(s) 138, 176, 800, 933
SatI GCNGC 4 cut(s) 37, 40, 504, 953
Sau3AI GATC 6 cut(s) 334, 361, 778, 784, 819, 958
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 2 cut(s) 696, 842
ScrFI CCNGG 2 cut(s) 128, 454
SduI GDGCHC 2 cut(s) 83, 186
SetI ASST 8 cut(s) 44, 172, 186, 229, 274, 317, 755, 939
SfaNI GCATC 6 cut(s) 78, 221, 445, 466, 646, 954
SmiMI CAYNNNNRTG 4 cut(s) 86, 351, 357, 884
Sse9I AATT 7 cut(s) 29, 73, 258, 589, 705, 893, 930
SspMI CTAG 2 cut(s) 11, 312
SstI GAGCTC 1 cut(s) 186
StyD4I CCNGG 2 cut(s) 126, 452
StyI CCWWGG 1 cut(s) 879
TaaI ACNGT 3 cut(s) 447, 478, 702
TaqI TCGA 1 cut(s) 939
TasI AATT 7 cut(s) 29, 73, 258, 589, 705, 893, 930
TatI WGTACW 2 cut(s) 442, 738
TfiI GAWTC 3 cut(s) 250, 526, 634
Tru1I TTAA 4 cut(s) 138, 176, 800, 933
Tru9I TTAA 4 cut(s) 138, 176, 800, 933
TscAI CASTG 3 cut(s) 159, 483, 653
TseI GCWGC 4 cut(s) 36, 39, 503, 952
TspDTI ATGAA 8 cut(s) 84, 179, 207, 251, 335, 341, 500, 719
TspRI CASTG 3 cut(s) 159, 483, 653
XapI RAATTY 2 cut(s) 73, 893
XceI RCATGY 2 cut(s) 865, 920
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 2 cut(s) 11, 312
Zsp2I ATGCAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.