Rh4AG105200
ERF Family

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000442
Physical Location & Seq
Reverse (-)
22622966 .. 22626259
3294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG105200.1

Sequence Viewer

Length: 183 bp
ATGGCTTCACAGGAAATCAGAAAAGTCTCTGAAGCATATCCAATGAAAGGTGGAGATGGCCCCGATAGCTATGCCAAGAACTCTACTTATCAGTACCACGAAAGGCACTCGATATGGCTCGGATCCCGGACCGGCGAAGAACAGAAGAATCGCGGTCGTCTTCGGCTTCAAGGAGTTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

60

Amino Acids

6.85

Weight (kDa)

9.52

Isoelectric Point (pI)

56.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 153
AciI CCGC 1 cut(s) 153
AclWI GGATC 2 cut(s) 117, 130
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 1 cut(s) 170
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 31
AlwI GGATC 2 cut(s) 117, 130
AoxI GGCC 1 cut(s) 58
AspS9I GGNCC 2 cut(s) 59, 129
AsuC2I CCSGG 1 cut(s) 127
AvaII GGWCC 1 cut(s) 129
BamHI GGATCC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 152
BccI CCATC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 59, 129
BmiI GGNNCC 2 cut(s) 61, 124
BmrFI CCNGG 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse118I RCCGGY 1 cut(s) 131
BseLI CCNNNNNNNGG 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 1 cut(s) 60
BsiEI CGRYCG 1 cut(s) 157
BsiSI CCGG 2 cut(s) 127, 132
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 31
BsnI GGCC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 122
BspACI CCGC 1 cut(s) 153
BspANI GGCC 1 cut(s) 60
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 61, 124
BspPI GGATC 2 cut(s) 117, 130
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssMI GATC 1 cut(s) 122
BstFNI CGCG 1 cut(s) 153
BstKTI GATC 1 cut(s) 125
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 1 cut(s) 122
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 125
BstUI CGCG 1 cut(s) 153
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
BsuRI GGCC 1 cut(s) 60
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 2 cut(s) 59, 129
CpoI CGGWCCG 1 cut(s) 129
Csp6I GTAC 1 cut(s) 94
CspI CGGWCCG 1 cut(s) 129
CviJI RGCY 5 cut(s) 5, 60, 69, 118, 166
CviKI_1 RGCY 5 cut(s) 5, 60, 69, 118, 166
CviQI GTAC 1 cut(s) 94
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 51
FaiI YATR 3 cut(s) 37, 72, 115
HaeIII GGCC 1 cut(s) 60
HapII CCGG 2 cut(s) 127, 132
HinfI GANTC 1 cut(s) 148
HpaII CCGG 2 cut(s) 127, 132
Hpy188I TCNGA 3 cut(s) 20, 31, 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
Kzo9I GATC 1 cut(s) 122
LpnPI CCDG 2 cut(s) 140, 145
MalI GATC 1 cut(s) 124
MboI GATC 1 cut(s) 122
MboII GAAGA 3 cut(s) 149, 152, 157
MflI RGATCY 1 cut(s) 122
MspI CCGG 2 cut(s) 127, 132
MspR9I CCNGG 1 cut(s) 127
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 66
NciI CCSGG 1 cut(s) 127
NdeII GATC 1 cut(s) 122
NlaIV GGNNCC 2 cut(s) 61, 124
PfeI GAWTC 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 125
PspN4I GGNNCC 2 cut(s) 61, 124
PspPI GGNCC 2 cut(s) 59, 129
PsuI RGATCY 1 cut(s) 122
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
Rsr2I CGGWCCG 1 cut(s) 129
RsrII CGGWCCG 1 cut(s) 129
Sau3AI GATC 1 cut(s) 122
Sau96I GGNCC 2 cut(s) 59, 129
ScrFI CCNGG 1 cut(s) 127
SetI ASST 2 cut(s) 52, 71
SinI GGWCC 1 cut(s) 129
SsiI CCGC 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 125
TaqI TCGA 1 cut(s) 110
TfiI GAWTC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.