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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 51, 808 |
| Acc36I | ACCTGC | 3 cut(s) | 51, 808, 940 |
| AccIII | TCCGGA | 1 cut(s) | 207 |
| AciI | CCGC | 7 cut(s) | 93, 138, 177, 274, 309, 375, 429 |
| AclWI | GGATC | 7 cut(s) | 49, 62, 219, 545, 551, 941, 1340 |
| AcoI | YGGCCR | 2 cut(s) | 220, 1282 |
| AcsI | RAATTY | 3 cut(s) | 211, 268, 485 |
| AcuI | CTGAAG | 2 cut(s) | 182, 850 |
| AfaI | GTAC | 1 cut(s) | 626 |
| AfeI | AGCGCT | 1 cut(s) | 461 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 214, 246, 756, 1111, 1291 |
| AgsI | TTSAA | 6 cut(s) | 661, 727, 814, 1069, 1159, 1199 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 12 |
| AjiI | CACGTC | 1 cut(s) | 454 |
| AjnI | CCWGG | 1 cut(s) | 1110 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 848, 880 |
| AleI | CACNNNNGTG | 1 cut(s) | 752 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 271, 303, 800, 832 |
| AluBI | AGCT | 6 cut(s) | 116, 732, 830, 1135, 1155, 1222 |
| AluI | AGCT | 6 cut(s) | 116, 732, 830, 1135, 1155, 1222 |
| Alw21I | GWGCWC | 4 cut(s) | 42, 118, 336, 390 |
| Alw26I | GTCTC | 1 cut(s) | 84 |
| AlwI | GGATC | 7 cut(s) | 49, 62, 219, 545, 551, 941, 1340 |
| Aor13HI | TCCGGA | 1 cut(s) | 207 |
| Aor51HI | AGCGCT | 1 cut(s) | 461 |
| AoxI | GGCC | 4 cut(s) | 220, 372, 426, 1282 |
| ApeKI | GCWGC | 2 cut(s) | 377, 1219 |
| ApoI | RAATTY | 3 cut(s) | 211, 268, 485 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 708, 863, 1176 |
| AspLEI | GCGC | 1 cut(s) | 462 |
| AsuC2I | CCSGG | 2 cut(s) | 890, 1327 |
| AsuHPI | GGTGA | 4 cut(s) | 25, 658, 739, 1027 |
| AsuII | TTCGAA | 1 cut(s) | 875 |
| BaeGI | GKGCMC | 1 cut(s) | 157 |
| BalI | TGGCCA | 1 cut(s) | 1284 |
| BamHI | GGATCC | 1 cut(s) | 54 |
| BanII | GRGCYC | 2 cut(s) | 118, 609 |
| Bbv12I | GWGCWC | 4 cut(s) | 42, 118, 336, 390 |
| BbvI | GCAGC | 2 cut(s) | 364, 1231 |
| BccI | CCATC | 5 cut(s) | 178, 334, 985, 1274, 1307 |
| BceAI | ACGGC | 5 cut(s) | 139, 145, 151, 296, 722 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1268, 1302 |
| BciT130I | CCWGG | 1 cut(s) | 1112 |
| BciVI | GTATCC | 1 cut(s) | 860 |
| BcnI | CCSGG | 2 cut(s) | 890, 1327 |
| BcoDI | GTCTC | 1 cut(s) | 84 |
| BfaI | CTAG | 1 cut(s) | 1290 |
| BfmI | CTRYAG | 1 cut(s) | 1336 |
| BfoI | RGCGCY | 1 cut(s) | 463 |
| BfuAI | ACCTGC | 3 cut(s) | 51, 808, 940 |
| BfuI | GTATCC | 1 cut(s) | 860 |
| BisI | GCNGC | 4 cut(s) | 375, 378, 429, 1220 |
| BlsI | GCNGC | 4 cut(s) | 376, 379, 430, 1221 |
| Bme1390I | CCNGG | 3 cut(s) | 890, 1112, 1327 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 12 |
| BmgBI | CACGTC | 1 cut(s) | 454 |
| BmiI | GGNNCC | 2 cut(s) | 56, 1297 |
| BmrFI | CCNGG | 3 cut(s) | 890, 1112, 1327 |
| BmsI | GCATC | 6 cut(s) | 112, 389, 476, 558, 769, 916 |
| Bpu14I | TTCGAA | 1 cut(s) | 875 |
| BpuEI | CTTGAG | 2 cut(s) | 467, 1199 |
| BpuMI | CCSGG | 2 cut(s) | 890, 1327 |
| Bsa29I | ATCGAT | 1 cut(s) | 1302 |
| BsaBI | GATNNNNATC | 1 cut(s) | 906 |
| BsaJI | CCNNGG | 2 cut(s) | 312, 1248 |
| BsaWI | WCCGGW | 2 cut(s) | 207, 1123 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 132, 162, 271, 301, 1219, 1249 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 214, 246, 756, 1111, 1291 |
| Bse3DI | GCAATG | 2 cut(s) | 170, 1032 |
| Bse8I | GATNNNNATC | 1 cut(s) | 906 |
| BseAI | TCCGGA | 1 cut(s) | 207 |
| BseBI | CCWGG | 1 cut(s) | 1112 |
| BseCI | ATCGAT | 1 cut(s) | 1302 |
| BseDI | CCNNGG | 2 cut(s) | 312, 1248 |
| BseGI | GGATG | 2 cut(s) | 819, 1099 |
| BseJI | GATNNNNATC | 1 cut(s) | 906 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 214, 246, 756, 1111, 1291 |
| BseMI | GCAATG | 2 cut(s) | 170, 1032 |
| BseMII | CTCAG | 3 cut(s) | 383, 403, 437 |
| BseSI | GKGCMC | 1 cut(s) | 157 |
| BseXI | GCAGC | 2 cut(s) | 364, 1231 |
| BseYI | CCCAGC | 1 cut(s) | 431 |
| BsgI | GTGCAG | 2 cut(s) | 29, 786 |
| BshFI | GGCC | 4 cut(s) | 222, 374, 428, 1284 |
| BshVI | ATCGAT | 1 cut(s) | 1302 |
| BsiHKAI | GWGCWC | 4 cut(s) | 42, 118, 336, 390 |
| BsiSI | CCGG | 5 cut(s) | 208, 890, 920, 1124, 1326 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 214, 246, 756, 1111, 1291 |
| BsmAI | GTCTC | 1 cut(s) | 84 |
| BsnI | GGCC | 4 cut(s) | 222, 374, 428, 1284 |
| Bsp119I | TTCGAA | 1 cut(s) | 875 |
| Bsp1286I | GDGCHC | 6 cut(s) | 42, 118, 157, 336, 390, 609 |
| Bsp13I | TCCGGA | 1 cut(s) | 207 |
| Bsp143I | GATC | 8 cut(s) | 54, 224, 537, 556, 946, 1303, 1332, 1348 |
| Bsp19I | CCATGG | 1 cut(s) | 1248 |
| BspACI | CCGC | 7 cut(s) | 93, 138, 177, 274, 309, 375, 429 |
| BspANI | GGCC | 4 cut(s) | 222, 374, 428, 1284 |
| BspCNI | CTCAG | 3 cut(s) | 382, 402, 436 |
| BspDI | ATCGAT | 1 cut(s) | 1302 |
| BspEI | TCCGGA | 1 cut(s) | 207 |
| BspHI | TCATGA | 1 cut(s) | 1168 |
| BspLI | GGNNCC | 2 cut(s) | 56, 1297 |
| BspMI | ACCTGC | 3 cut(s) | 51, 808, 940 |
| BspPI | GGATC | 7 cut(s) | 49, 62, 219, 545, 551, 941, 1340 |
| BspT104I | TTCGAA | 1 cut(s) | 875 |
| BsrDI | GCAATG | 2 cut(s) | 170, 1032 |
| BssECI | CCNNGG | 2 cut(s) | 312, 1248 |
| BssMI | GATC | 8 cut(s) | 54, 224, 537, 556, 946, 1303, 1332, 1348 |
| BssT1I | CCWWGG | 1 cut(s) | 1248 |
| Bst2UI | CCWGG | 1 cut(s) | 1112 |
| Bst4CI | ACNGT | 3 cut(s) | 441, 848, 1231 |
| Bst6I | CTCTTC | 1 cut(s) | 168 |
| BstBI | TTCGAA | 1 cut(s) | 875 |
| BstC8I | GCNNGC | 3 cut(s) | 177, 309, 774 |
| BstDEI | CTNAG | 4 cut(s) | 180, 369, 389, 423 |
| BstDSI | CCRYGG | 2 cut(s) | 312, 1248 |
| BstF5I | GGATG | 2 cut(s) | 819, 1099 |
| BstH2I | RGCGCY | 1 cut(s) | 463 |
| BstHHI | GCGC | 1 cut(s) | 462 |
| BstKTI | GATC | 8 cut(s) | 57, 227, 540, 559, 949, 1306, 1335, 1351 |
| BstMAI | GTCTC | 1 cut(s) | 84 |
| BstMBI | GATC | 8 cut(s) | 54, 224, 537, 556, 946, 1303, 1332, 1348 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 24, 185, 604, 1281, 1295 |
| BstNI | CCWGG | 1 cut(s) | 1112 |
| BstSCI | CCNGG | 3 cut(s) | 888, 1110, 1325 |
| BstSFI | CTRYAG | 1 cut(s) | 1336 |
| BstSLI | GKGCMC | 1 cut(s) | 157 |
| BstV1I | GCAGC | 2 cut(s) | 364, 1231 |
| BstX2I | RGATCY | 3 cut(s) | 54, 556, 1332 |
| BstYI | RGATCY | 3 cut(s) | 54, 556, 1332 |
| Bsu15I | ATCGAT | 1 cut(s) | 1302 |
| BsuI | GTATCC | 1 cut(s) | 860 |
| BsuRI | GGCC | 4 cut(s) | 222, 374, 428, 1284 |
| BsuTUI | ATCGAT | 1 cut(s) | 1302 |
| BtgI | CCRYGG | 2 cut(s) | 312, 1248 |
| BtrI | CACGTC | 1 cut(s) | 454 |
| BtsCI | GGATG | 2 cut(s) | 819, 1099 |
| BveI | ACCTGC | 3 cut(s) | 51, 808, 940 |
| Cac8I | GCNNGC | 3 cut(s) | 177, 309, 774 |
| CciI | TCATGA | 1 cut(s) | 1168 |
| CfoI | GCGC | 1 cut(s) | 462 |
| ClaI | ATCGAT | 1 cut(s) | 1302 |
| Csp6I | GTAC | 1 cut(s) | 625 |
| CviAII | CATG | 5 cut(s) | 1073, 1169, 1240, 1249, 1286 |
| CviQI | GTAC | 1 cut(s) | 625 |
| DdeI | CTNAG | 4 cut(s) | 180, 369, 389, 423 |
| DpnI | GATC | 8 cut(s) | 56, 226, 539, 558, 948, 1305, 1334, 1350 |
| DpnII | GATC | 8 cut(s) | 54, 224, 537, 556, 946, 1303, 1332, 1348 |
| DriI | GACNNNNNGTC | 1 cut(s) | 12 |
| EaeI | YGGCCR | 2 cut(s) | 220, 1282 |
| Eam1104I | CTCTTC | 1 cut(s) | 168 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 12 |
| EarI | CTCTTC | 1 cut(s) | 168 |
| EciI | GGCGGA | 2 cut(s) | 82, 153 |
| Ecl136II | GAGCTC | 1 cut(s) | 116 |
| Eco130I | CCWWGG | 1 cut(s) | 1248 |
| Eco24I | GRGCYC | 2 cut(s) | 118, 609 |
| Eco47III | AGCGCT | 1 cut(s) | 461 |
| Eco53kI | GAGCTC | 1 cut(s) | 116 |
| Eco57I | CTGAAG | 2 cut(s) | 182, 850 |
| EcoICRI | GAGCTC | 1 cut(s) | 116 |
| EcoRI | GAATTC | 1 cut(s) | 211 |
| EcoRII | CCWGG | 1 cut(s) | 1110 |
| EcoT14I | CCWWGG | 1 cut(s) | 1248 |
| EcoT38I | GRGCYC | 2 cut(s) | 118, 609 |
| ErhI | CCWWGG | 1 cut(s) | 1248 |
| FaeI | CATG | 5 cut(s) | 1076, 1172, 1243, 1252, 1289 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 535, 567, 848, 880, 869, 901 |
| FatI | CATG | 5 cut(s) | 1072, 1168, 1239, 1248, 1285 |
| FauI | CCCGC | 3 cut(s) | 184, 267, 316 |
| Fnu4HI | GCNGC | 4 cut(s) | 375, 378, 429, 1220 |
| FokI | GGATG | 2 cut(s) | 806, 1106 |
| FriOI | GRGCYC | 2 cut(s) | 118, 609 |
| Fsp4HI | GCNGC | 4 cut(s) | 375, 378, 429, 1220 |
| FspBI | CTAG | 1 cut(s) | 1290 |
| GlaI | GCGC | 1 cut(s) | 461 |
| GluI | GCNGC | 4 cut(s) | 375, 378, 429, 1220 |
| GsaI | CCCAGC | 1 cut(s) | 435 |
| HaeII | RGCGCY | 1 cut(s) | 463 |
| HaeIII | GGCC | 4 cut(s) | 222, 374, 428, 1284 |
| HapII | CCGG | 5 cut(s) | 208, 890, 920, 1124, 1326 |
| HhaI | GCGC | 1 cut(s) | 462 |
| Hin1II | CATG | 5 cut(s) | 1076, 1172, 1243, 1252, 1289 |
| Hin6I | GCGC | 1 cut(s) | 460 |
| HinP1I | GCGC | 1 cut(s) | 460 |
| HinfI | GANTC | 5 cut(s) | 145, 282, 641, 766, 1077 |
| HpaII | CCGG | 5 cut(s) | 208, 890, 920, 1124, 1326 |
| HphI | GGTGA | 4 cut(s) | 25, 658, 739, 1027 |
| Hpy166II | GTNNAC | 2 cut(s) | 290, 1018 |
| Hpy188I | TCNGA | 7 cut(s) | 108, 201, 495, 765, 834, 1051, 1059 |
| Hpy188III | TCNNGA | 9 cut(s) | 83, 119, 208, 259, 446, 737, 950, 1169, 1181 |
| Hpy8I | GTNNAC | 2 cut(s) | 290, 1018 |
| Hpy99I | CGWCG | 3 cut(s) | 125, 131, 137 |
| HpyAV | CCTTC | 5 cut(s) | 206, 655, 668, 874, 1056 |
| HpyCH4III | ACNGT | 3 cut(s) | 441, 848, 1231 |
| HpyCH4IV | ACGT | 1 cut(s) | 453 |
| HpyCH4V | TGCA | 7 cut(s) | 46, 380, 670, 803, 935, 980, 997 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 24, 185, 604, 1281, 1295 |
| HpyF3I | CTNAG | 4 cut(s) | 180, 369, 389, 423 |
| HpySE526I | ACGT | 1 cut(s) | 453 |
| Hsp92II | CATG | 5 cut(s) | 1076, 1172, 1243, 1252, 1289 |
| HspAI | GCGC | 1 cut(s) | 460 |
| Kpn2I | TCCGGA | 1 cut(s) | 207 |
| Kzo9I | GATC | 8 cut(s) | 54, 224, 537, 556, 946, 1303, 1332, 1348 |
| LmnI | GCTCC | 4 cut(s) | 316, 475, 685, 1295 |
| Lsp1109I | GCAGC | 2 cut(s) | 364, 1231 |
| LweI | GCATC | 6 cut(s) | 112, 389, 476, 558, 769, 916 |
| MaeI | CTAG | 1 cut(s) | 1290 |
| MaeII | ACGT | 1 cut(s) | 453 |
| MaeIII | GTNAC | 3 cut(s) | 31, 745, 1231 |
| MalI | GATC | 8 cut(s) | 56, 226, 539, 558, 948, 1305, 1334, 1350 |
| MboI | GATC | 8 cut(s) | 54, 224, 537, 556, 946, 1303, 1332, 1348 |
| MboII | GAAGA | 7 cut(s) | 155, 287, 353, 493, 577, 1000, 1211 |
| MfeI | CAATTG | 2 cut(s) | 939, 1064 |
| MflI | RGATCY | 3 cut(s) | 54, 556, 1332 |
| MhlI | GDGCHC | 6 cut(s) | 42, 118, 157, 336, 390, 609 |
| MlsI | TGGCCA | 1 cut(s) | 1284 |
| MluNI | TGGCCA | 1 cut(s) | 1284 |
| MlyI | GAGTC | 3 cut(s) | 139, 291, 650 |
| MmeI | TCCRAC | 1 cut(s) | 500 |
| MnlI | CCTC | 5 cut(s) | 19, 442, 750, 795, 946 |
| Mox20I | TGGCCA | 1 cut(s) | 1284 |
| MroI | TCCGGA | 1 cut(s) | 207 |
| MroXI | GAANNNNTTC | 3 cut(s) | 708, 863, 1176 |
| MscI | TGGCCA | 1 cut(s) | 1284 |
| MseI | TTAA | 1 cut(s) | 1023 |
| MslI | CAYNNNNRTG | 3 cut(s) | 752, 1167, 1253 |
| Msp20I | TGGCCA | 1 cut(s) | 1284 |
| MspA1I | CMGCKG | 3 cut(s) | 377, 431, 1222 |
| MspI | CCGG | 5 cut(s) | 208, 890, 920, 1124, 1326 |
| MspR9I | CCNGG | 3 cut(s) | 890, 1112, 1327 |
| MunI | CAATTG | 2 cut(s) | 939, 1064 |
| MvaI | CCWGG | 1 cut(s) | 1112 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 24, 185, 604, 1281, 1295 |
| NciI | CCSGG | 2 cut(s) | 890, 1327 |
| NcoI | CCATGG | 1 cut(s) | 1248 |
| NdeII | GATC | 8 cut(s) | 54, 224, 537, 556, 946, 1303, 1332, 1348 |
| NlaIII | CATG | 5 cut(s) | 1076, 1172, 1243, 1252, 1289 |
| NlaIV | GGNNCC | 2 cut(s) | 56, 1297 |
| NmeAIII | GCCGAG | 1 cut(s) | 443 |
| NmuCI | GTSAC | 2 cut(s) | 31, 745 |
| NspV | TTCGAA | 1 cut(s) | 875 |
| OliI | CACNNNNGTG | 1 cut(s) | 752 |
| PagI | TCATGA | 1 cut(s) | 1168 |
| PaqCI | CACCTGC | 2 cut(s) | 51, 808 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 129, 148 |
| PdmI | GAANNNNTTC | 3 cut(s) | 708, 863, 1176 |
| PfeI | GAWTC | 2 cut(s) | 766, 1077 |
| PflFI | GACNNNGTC | 1 cut(s) | 743 |
| PkrI | GCNGC | 4 cut(s) | 376, 379, 430, 1221 |
| PleI | GAGTC | 3 cut(s) | 139, 290, 649 |
| PpsI | GAGTC | 3 cut(s) | 139, 290, 649 |
| Psp124BI | GAGCTC | 1 cut(s) | 118 |
| Psp6I | CCWGG | 1 cut(s) | 1110 |
| PspFI | CCCAGC | 1 cut(s) | 431 |
| PspGI | CCWGG | 1 cut(s) | 1110 |
| PspN4I | GGNNCC | 2 cut(s) | 56, 1297 |
| PsuI | RGATCY | 3 cut(s) | 54, 556, 1332 |
| PsyI | GACNNNGTC | 1 cut(s) | 743 |
| PvuII | CAGCTG | 1 cut(s) | 1222 |
| RsaI | GTAC | 1 cut(s) | 626 |
| RsaNI | GTAC | 1 cut(s) | 625 |
| RseI | CAYNNNNRTG | 3 cut(s) | 752, 1167, 1253 |
| SacI | GAGCTC | 1 cut(s) | 118 |
| SaqAI | TTAA | 1 cut(s) | 1023 |
| SatI | GCNGC | 4 cut(s) | 375, 378, 429, 1220 |
| Sau3AI | GATC | 8 cut(s) | 54, 224, 537, 556, 946, 1303, 1332, 1348 |
| SchI | GAGTC | 3 cut(s) | 139, 291, 650 |
| ScrFI | CCNGG | 3 cut(s) | 890, 1112, 1327 |
| SduI | GDGCHC | 6 cut(s) | 42, 118, 157, 336, 390, 609 |
| SfaNI | GCATC | 6 cut(s) | 112, 389, 476, 558, 769, 916 |
| SfcI | CTRYAG | 1 cut(s) | 1336 |
| SfuI | TTCGAA | 1 cut(s) | 875 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 752, 1167, 1253 |
| SmlI | CTYRAG | 3 cut(s) | 10, 446, 1214 |
| SmoI | CTYRAG | 3 cut(s) | 10, 446, 1214 |
| SsiI | CCGC | 7 cut(s) | 93, 138, 177, 274, 309, 375, 429 |
| SspMI | CTAG | 1 cut(s) | 1290 |
| SstI | GAGCTC | 1 cut(s) | 118 |
| StyD4I | CCNGG | 3 cut(s) | 888, 1110, 1325 |
| StyI | CCWWGG | 1 cut(s) | 1248 |
| TaaI | ACNGT | 3 cut(s) | 441, 848, 1231 |
| TaiI | ACGT | 1 cut(s) | 456 |
| TaqI | TCGA | 7 cut(s) | 84, 120, 260, 540, 738, 875, 1302 |
| TauI | GCSGC | 2 cut(s) | 377, 431 |
| TfiI | GAWTC | 2 cut(s) | 766, 1077 |
| Tru1I | TTAA | 1 cut(s) | 1023 |
| Tru9I | TTAA | 1 cut(s) | 1023 |
| TseFI | GTSAC | 2 cut(s) | 31, 745 |
| TseI | GCWGC | 2 cut(s) | 377, 1219 |
| Tsp45I | GTSAC | 2 cut(s) | 31, 745 |
| TspDTI | ATGAA | 8 cut(s) | 808, 980, 1021, 1132, 1157, 1185, 1200, 1303 |
| TspGWI | ACGGA | 2 cut(s) | 140, 157 |
| Tth111I | GACNNNGTC | 1 cut(s) | 743 |
| XapI | RAATTY | 3 cut(s) | 211, 268, 485 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 310, 1246 |
| XmnI | GAANNNNTTC | 3 cut(s) | 708, 863, 1176 |
| XspI | CTAG | 1 cut(s) | 1290 |