Rh2AG630700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000442
Physical Location & Seq
Reverse (-)
85554082 .. 85559568
5487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG630700.1

Sequence Viewer

Length: 711 bp
ATGTTTTTCGTCATTCCTGAAAATCCAAACTACAAAGCCAAGCATTCAGGCGAAAATAGAAAGCACCACTTCCAGAAACTCATCAGTGGCCATCAGGTTGATCCAGCTCAAGCATCTACAGAGGCAAATTTAATGAAATGGGAGACAGCTTACCATAAGATGGTGAAGGAGACAAGGAAAGTGAACATTCAGAAATCCATTTCAGAACTTGCCCCTGAGTTTCATGAAATATACAATGATGGAATATTGCGCAAAGGAAGTAGGCCTCAAAGATACCAGGATAAGAATGCTGCTGATGAGTTGCACTACTTTTGCAATACCATGAAGCACATTCATGCAAAGTTTTCCCAGGAAACTTATGATAAAGCTAGACATAACCCTGAAGCTATACTTGCCTCGTTGCATAGTATGTCTCCAACAATTCCCATGGACATTTTTCAATTTTTCTGGAGTTATGATGGACATGCTTTAAGAACCATTTCTCTTGACTTTGTCAAGACTATTAGCAAATCTGTCACAAAAGAAAGCAAGGCCCAGCAAGCTACACATAGTTCCCATATTCTCCGGGCCCAACCGTTGCAAACAATGCCTAGTGATGAAGGTAGTGAGCTCAGCATGAGTACCACTACCAGTACAGGGGCATGCCTTGCGTGTGATGCAGGAATGCTCTTGAGCCTCACCCGGATTAGCAAATCAGCTCCTCAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.71

Weight (kDa)

8.86

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 160
AclWI GGATC 1 cut(s) 95
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 2 cut(s) 622, 634
AfiI CCNNNNNNNGG 2 cut(s) 160, 636
AgsI TTSAA 1 cut(s) 440
AjnI CCWGG 2 cut(s) 276, 348
AluBI AGCT 8 cut(s) 107, 149, 368, 386, 542, 610, 698, 707
AluI AGCT 8 cut(s) 107, 149, 368, 386, 542, 610, 698, 707
Alw21I GWGCWC 1 cut(s) 612
Alw26I GTCTC 3 cut(s) 137, 164, 417
AlwI GGATC 1 cut(s) 95
AoxI GGCC 4 cut(s) 88, 263, 531, 567
ApaI GGGCCC 1 cut(s) 571
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 127
Asp700I GAANNNNTTC 1 cut(s) 478
AspLEI GCGC 1 cut(s) 252
AspS9I GGNCC 3 cut(s) 532, 567, 568
AsuC2I CCSGG 2 cut(s) 566, 682
AsuHPI GGTGA 2 cut(s) 175, 670
BaeGI GKGCMC 1 cut(s) 571
BalI TGGCCA 1 cut(s) 90
BanII GRGCYC 2 cut(s) 571, 612
Bbv12I GWGCWC 1 cut(s) 612
BbvI GCAGC 1 cut(s) 277
BccI CCATC 4 cut(s) 99, 154, 233, 452
BciT130I CCWGG 2 cut(s) 278, 350
BcnI CCSGG 2 cut(s) 566, 682
BcoDI GTCTC 3 cut(s) 137, 164, 417
BfaI CTAG 2 cut(s) 369, 591
BfmI CTRYAG 1 cut(s) 117
BisI GCNGC 1 cut(s) 291
BlpI GCTNAGC 1 cut(s) 611
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 4 cut(s) 278, 350, 566, 682
BmgT120I GGNCC 3 cut(s) 532, 567, 568
BmiI GGNNCC 1 cut(s) 569
BmrFI CCNGG 4 cut(s) 278, 350, 566, 682
BmsI GCATC 2 cut(s) 122, 646
BpmI CTGGAG 1 cut(s) 469
Bpu1102I GCTNAGC 1 cut(s) 611
BpuEI CTTGAG 3 cut(s) 93, 687, 691
BpuMI CCSGG 2 cut(s) 566, 682
BsaJI CCNNGG 2 cut(s) 348, 426
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 636
Bse1I ACTGG 1 cut(s) 630
BseBI CCWGG 2 cut(s) 278, 350
BseDI CCNNGG 2 cut(s) 348, 426
BseLI CCNNNNNNNGG 2 cut(s) 160, 636
BseMII CTCAG 2 cut(s) 207, 625
BseNI ACTGG 1 cut(s) 630
BseRI GAGGAG 1 cut(s) 690
BseSI GKGCMC 1 cut(s) 571
BseXI GCAGC 1 cut(s) 277
BseYI CCCAGC 1 cut(s) 534
BshFI GGCC 4 cut(s) 90, 265, 533, 569
BsiHKAI GWGCWC 1 cut(s) 612
BsiSI CCGG 2 cut(s) 565, 682
BslI CCNNNNNNNGG 2 cut(s) 160, 636
BsmAI GTCTC 3 cut(s) 137, 164, 417
BsmI GAATGC 3 cut(s) 43, 292, 669
BsnI GGCC 4 cut(s) 90, 265, 533, 569
Bsp120I GGGCCC 1 cut(s) 567
Bsp1286I GDGCHC 2 cut(s) 571, 612
Bsp143I GATC 1 cut(s) 100
Bsp1720I GCTNAGC 1 cut(s) 611
Bsp19I CCATGG 1 cut(s) 426
BspANI GGCC 4 cut(s) 90, 265, 533, 569
BspCNI CTCAG 2 cut(s) 208, 624
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 569
BspPI GGATC 1 cut(s) 95
BsrI ACTGG 1 cut(s) 630
BssECI CCNNGG 2 cut(s) 348, 426
BssMI GATC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 2 cut(s) 278, 350
Bst4CI ACNGT 1 cut(s) 576
BstAPI GCANNNNNTGC 2 cut(s) 586, 647
BstC8I GCNNGC 2 cut(s) 540, 643
BstDEI CTNAG 2 cut(s) 216, 611
BstDSI CCRYGG 1 cut(s) 426
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 3 cut(s) 137, 164, 417
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 6 cut(s) 392, 539, 586, 647, 656, 704
BstNI CCWGG 2 cut(s) 278, 350
BstNSI RCATGY 2 cut(s) 467, 645
BstSCI CCNGG 4 cut(s) 276, 348, 564, 680
BstSFI CTRYAG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 571
BstV1I GCAGC 1 cut(s) 277
BsuRI GGCC 4 cut(s) 90, 265, 533, 569
BtgI CCRYGG 1 cut(s) 426
BtsIMutI CAGTG 1 cut(s) 91
Cac8I GCNNGC 2 cut(s) 540, 643
CciI TCATGA 1 cut(s) 223
CfoI GCGC 1 cut(s) 252
Cfr13I GGNCC 3 cut(s) 532, 567, 568
Csp6I GTAC 2 cut(s) 621, 633
CviAII CATG 7 cut(s) 224, 322, 335, 427, 464, 616, 642
CviQI GTAC 2 cut(s) 621, 633
DdeI CTNAG 2 cut(s) 216, 611
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 610
Eco130I CCWWGG 1 cut(s) 426
Eco147I AGGCCT 1 cut(s) 265
Eco24I GRGCYC 2 cut(s) 571, 612
Eco53kI GAGCTC 1 cut(s) 610
Eco57I CTGAAG 1 cut(s) 402
EcoICRI GAGCTC 1 cut(s) 610
EcoRII CCWGG 2 cut(s) 276, 348
EcoT14I CCWWGG 1 cut(s) 426
EcoT38I GRGCYC 2 cut(s) 571, 612
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 7 cut(s) 227, 325, 338, 430, 467, 619, 645
FalI AAGNNNNNCTT 4 cut(s) 53, 85, 375, 407
FatI CATG 7 cut(s) 223, 321, 334, 426, 463, 615, 641
Fnu4HI GCNGC 1 cut(s) 291
FriOI GRGCYC 2 cut(s) 571, 612
Fsp4HI GCNGC 1 cut(s) 291
FspBI CTAG 2 cut(s) 369, 591
FspI TGCGCA 1 cut(s) 251
GlaI GCGC 1 cut(s) 251
GluI GCNGC 1 cut(s) 291
GsaI CCCAGC 1 cut(s) 538
GsuI CTGGAG 1 cut(s) 469
HaeIII GGCC 4 cut(s) 90, 265, 533, 569
HapII CCGG 2 cut(s) 565, 682
HhaI GCGC 1 cut(s) 252
Hin1II CATG 7 cut(s) 227, 325, 338, 430, 467, 619, 645
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 705
HpaII CCGG 2 cut(s) 565, 682
HphI GGTGA 2 cut(s) 175, 670
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 192, 205
Hpy188III TCNNGA 7 cut(s) 17, 73, 224, 448, 485, 496, 670
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 2 cut(s) 160, 593
HpyCH4III ACNGT 1 cut(s) 576
HpyCH4V TGCA 6 cut(s) 304, 315, 338, 403, 580, 659
HpyF10VI GCNNNNNNNGC 6 cut(s) 392, 539, 586, 647, 656, 704
HpyF3I CTNAG 2 cut(s) 216, 611
Hsp92II CATG 7 cut(s) 227, 325, 338, 430, 467, 619, 645
HspAI GCGC 1 cut(s) 250
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 703
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 2 cut(s) 122, 646
MaeI CTAG 2 cut(s) 369, 591
MaeIII GTNAC 1 cut(s) 514
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MhlI GDGCHC 2 cut(s) 571, 612
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 3 cut(s) 127, 420, 440
MluNI TGGCCA 1 cut(s) 90
MmeI TCCRAC 1 cut(s) 440
MnlI CCTC 5 cut(s) 115, 276, 406, 686, 711
Mox20I TGGCCA 1 cut(s) 90
MroXI GAANNNNTTC 1 cut(s) 478
MscI TGGCCA 1 cut(s) 90
MseI TTAA 3 cut(s) 131, 470, 709
MslI CAYNNNNRTG 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 90
MspI CCGG 2 cut(s) 565, 682
MspR9I CCNGG 4 cut(s) 278, 350, 566, 682
Mva1269I GAATGC 3 cut(s) 43, 292, 669
MvaI CCWGG 2 cut(s) 278, 350
MwoI GCNNNNNNNGC 6 cut(s) 392, 539, 586, 647, 656, 704
NciI CCSGG 2 cut(s) 566, 682
NcoI CCATGG 1 cut(s) 426
NdeII GATC 1 cut(s) 100
NlaIII CATG 7 cut(s) 227, 325, 338, 430, 467, 619, 645
NlaIV GGNNCC 1 cut(s) 569
NmuCI GTSAC 1 cut(s) 514
NsbI TGCGCA 1 cut(s) 251
NspI RCATGY 2 cut(s) 467, 645
PaeI GCATGC 1 cut(s) 645
PagI TCATGA 1 cut(s) 223
PceI AGGCCT 1 cut(s) 265
PctI GAATGC 3 cut(s) 43, 292, 669
PdmI GAANNNNTTC 1 cut(s) 478
PflFI GACNNNGTC 1 cut(s) 491
PflMI CCANNNNNTGG 1 cut(s) 160
PkrI GCNGC 1 cut(s) 292
Psp124BI GAGCTC 1 cut(s) 612
Psp6I CCWGG 2 cut(s) 276, 348
PspFI CCCAGC 1 cut(s) 534
PspGI CCWGG 2 cut(s) 276, 348
PspN4I GGNNCC 1 cut(s) 569
PspOMI GGGCCC 1 cut(s) 567
PspPI GGNCC 3 cut(s) 532, 567, 568
PsyI GACNNNGTC 1 cut(s) 491
RsaI GTAC 2 cut(s) 622, 634
RsaNI GTAC 2 cut(s) 621, 633
RseI CAYNNNNRTG 1 cut(s) 333
SacI GAGCTC 1 cut(s) 612
SaqAI TTAA 3 cut(s) 131, 470, 709
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 3 cut(s) 532, 567, 568
ScrFI CCNGG 4 cut(s) 278, 350, 566, 682
SduI GDGCHC 2 cut(s) 571, 612
SfaNI GCATC 2 cut(s) 122, 646
SfcI CTRYAG 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 3 cut(s) 108, 670, 702
SmoI CTYRAG 3 cut(s) 108, 670, 702
SphI GCATGC 1 cut(s) 645
Sse9I AATT 3 cut(s) 127, 420, 440
SseBI AGGCCT 1 cut(s) 265
SspI AATATT 1 cut(s) 246
SspMI CTAG 2 cut(s) 369, 591
SstI GAGCTC 1 cut(s) 612
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 4 cut(s) 276, 348, 564, 680
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 1 cut(s) 576
TasI AATT 3 cut(s) 127, 420, 440
TatI WGTACW 1 cut(s) 632
Tru1I TTAA 3 cut(s) 131, 470, 709
Tru9I TTAA 3 cut(s) 131, 470, 709
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 6 cut(s) 149, 212, 240, 323, 338, 612
TspRI CASTG 1 cut(s) 91
Tth111I GACNNNGTC 1 cut(s) 491
Van91I CCANNNNNTGG 1 cut(s) 160
XapI RAATTY 1 cut(s) 127
XceI RCATGY 2 cut(s) 467, 645
XmnI GAANNNNTTC 1 cut(s) 478
XspI CTAG 2 cut(s) 369, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.