Rh2CG611100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000442
Physical Location & Seq
Forward (+)
78876006 .. 78878284
2279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG611100.1

Sequence Viewer

Length: 1038 bp
ATGGGATTTCTAGTTGGCATTTTGAGGAAATTGGGCAGCAGCTCCATTGTCAGTAACATGGGGCCAAAGTTGAATTTGGGCACAAAGATGCATTCATTTGGTACTCTGACCAGAAAAAACATTTTCCTGGAAGATATTAAGCATGAGGGGACACTGGAGCAAAAGAAAGCTTGCTTGAAAGAGCTCCTTCATGAAATGATATGGAGGATGAGGAGTGGCATTCAAGGTGGATGCACAGACCCAGAACAGATTCCCGTAATTCATCGCAGAGCTTACTTGCCAGACGAGACATATGTAGTAGGGAAATACCCTAGCTACTTATTTTCAGTAAAAGATCTGGCAGTTCATCTTCATGAGAATGATCAAATGAGTTCAAGGGACAGCATAAAGTTTGAAGATTTCAAGATTTACACGAGCCTATTGAACAACACAAGGCATCTTGTACTGTTGGCCGGGCATCCTCATCTACAAACAACAGTGCAAGAGTTAGCATACATACCAGCAGCACTTCATCAAATGGATTTGATTCCTGCCAAACAAAATGCCCGATACCGATACCGATACCGGCACTTCCCACTTCCCCACCCCAATTGCCGTCAAGTTCCACTTGCATTGGCATTTACAACTCCAAAGAATCTTCTACACCAGTGGCAGGATGCTTATAAGTGTGTGTGTGTCAACAGGAGAGTCCACATTGCACGGTCAATTGCAAGTGCTGGCAAAGAGTTTCATGATGTGTACAACTATCGTAGCTCATTCAAGACAAAAGGATACGACGATCGTGATCCCATAGATGAGTTAAGATATTACAGCAATGTGATCAAGCACTTAGATAATGAGCCAGTTGACTCCTTGCATGACATGTTTCCATACAACACCATGGAGATGTTCAAATTCCATTGGTGCTATGATAGACATGCTATGGGAACAATTAACCTCGAAAGCATCCAGCAGCAGCTTGATGGTTGCTTAAACATGTCCAGATCAGGCTCTTTAGCAAAAGGATATGCTCATGGCCCAACAAGAATGGCCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

39.87

Weight (kDa)

9.08

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
AclWI GGATC 1 cut(s) 779
AcoI YGGCCR 2 cut(s) 450, 1029
AcsI RAATTY 2 cut(s) 73, 893
AfaI GTAC 3 cut(s) 103, 444, 740
AfiI CCNNNNNNNGG 1 cut(s) 652
AflIII ACRYGT 2 cut(s) 861, 975
AgsI TTSAA 9 cut(s) 73, 178, 224, 375, 395, 403, 424, 760, 892
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 7 cut(s) 42, 170, 184, 272, 315, 753, 958
AluI AGCT 7 cut(s) 42, 170, 184, 272, 315, 753, 958
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 1 cut(s) 779
AoxI GGCC 4 cut(s) 62, 450, 1015, 1029
ApeKI GCWGC 5 cut(s) 36, 39, 503, 952, 955
ApoI RAATTY 2 cut(s) 73, 893
Asp700I GAANNNNTTC 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 62, 1016
AsuC2I CCSGG 1 cut(s) 454
BaeGI GKGCMC 1 cut(s) 83
BalI TGGCCA 1 cut(s) 1031
BanII GRGCYC 1 cut(s) 186
BauI CACGAG 1 cut(s) 412
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 5 cut(s) 48, 51, 515, 964, 967
BccI CCATC 1 cut(s) 956
BceAI ACGGC 1 cut(s) 579
BciT130I CCWGG 1 cut(s) 128
BciVI GTATCC 1 cut(s) 764
BclI TGATCA 2 cut(s) 361, 819
BcnI CCSGG 1 cut(s) 454
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 2 cut(s) 11, 312
BfuI GTATCC 1 cut(s) 764
BglII AGATCT 1 cut(s) 334
BisI GCNGC 5 cut(s) 37, 40, 504, 953, 956
BlsI GCNGC 5 cut(s) 38, 41, 505, 954, 957
Bme1390I CCNGG 2 cut(s) 128, 454
BmgT120I GGNCC 2 cut(s) 62, 1016
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 2 cut(s) 128, 454
BmsI GCATC 6 cut(s) 78, 221, 445, 466, 646, 954
BpmI CTGGAG 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 454
BsaBI GATNNNNATC 1 cut(s) 783
BsaJI CCNNGG 1 cut(s) 879
Bsc4I CCNNNNNNNGG 1 cut(s) 652
Bse118I RCCGGY 1 cut(s) 564
Bse1I ACTGG 4 cut(s) 159, 646, 842, 1032
Bse3DI GCAATG 2 cut(s) 693, 820
Bse8I GATNNNNATC 1 cut(s) 783
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 879
BseGI GGATG 5 cut(s) 213, 236, 457, 661, 945
BseJI GATNNNNATC 1 cut(s) 783
BseLI CCNNNNNNNGG 1 cut(s) 652
BseMI GCAATG 2 cut(s) 693, 820
BseNI ACTGG 4 cut(s) 159, 646, 842, 1032
BseRI GAGGAG 1 cut(s) 226
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 5 cut(s) 48, 51, 515, 964, 967
Bsh1285I CGRYCG 1 cut(s) 781
BshFI GGCC 4 cut(s) 64, 452, 1017, 1031
BsiEI CGRYCG 1 cut(s) 781
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 2 cut(s) 453, 565
BslFI GGGAC 2 cut(s) 163, 392
BslI CCNNNNNNNGG 1 cut(s) 652
BsmAI GTCTC 1 cut(s) 281
BsmFI GGGAC 2 cut(s) 163, 392
BsmI GAATGC 2 cut(s) 91, 219
BsnI GGCC 4 cut(s) 64, 452, 1017, 1031
Bsp1286I GDGCHC 2 cut(s) 83, 186
Bsp1407I TGTACA 1 cut(s) 738
Bsp143I GATC 6 cut(s) 334, 361, 778, 784, 819, 983
Bsp19I CCATGG 1 cut(s) 879
BspANI GGCC 4 cut(s) 64, 452, 1017, 1031
BspHI TCATGA 3 cut(s) 190, 352, 730
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 1 cut(s) 779
BsrDI GCAATG 2 cut(s) 693, 820
BsrFI RCCGGY 1 cut(s) 564
BsrGI TGTACA 1 cut(s) 738
BsrI ACTGG 4 cut(s) 159, 646, 842, 1032
BssAI RCCGGY 1 cut(s) 564
BssECI CCNNGG 1 cut(s) 879
BssMI GATC 6 cut(s) 334, 361, 778, 784, 819, 983
BssSI CACGAG 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 879
Bst2BI CACGAG 1 cut(s) 412
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 3 cut(s) 447, 478, 702
BstAUI TGTACA 1 cut(s) 738
BstC8I GCNNGC 2 cut(s) 172, 718
BstDEI CTNAG 1 cut(s) 829
BstDSI CCRYGG 1 cut(s) 879
BstF5I GGATG 5 cut(s) 213, 236, 457, 661, 945
BstKTI GATC 6 cut(s) 337, 364, 781, 787, 822, 986
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 6 cut(s) 334, 361, 778, 784, 819, 983
BstMCI CGRYCG 1 cut(s) 781
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 3 cut(s) 865, 920, 979
BstSCI CCNGG 2 cut(s) 126, 452
BstSLI GKGCMC 1 cut(s) 83
BstV1I GCAGC 5 cut(s) 48, 51, 515, 964, 967
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuI GTATCC 1 cut(s) 764
BsuRI GGCC 4 cut(s) 64, 452, 1017, 1031
BtgI CCRYGG 1 cut(s) 879
BtgZI GCGATG 1 cut(s) 248
BtsCI GGATG 5 cut(s) 213, 236, 457, 661, 945
BtsIMutI CAGTG 3 cut(s) 152, 483, 653
Cac8I GCNNGC 2 cut(s) 172, 718
CciI TCATGA 3 cut(s) 190, 352, 730
Cfr10I RCCGGY 1 cut(s) 564
Cfr13I GGNCC 2 cut(s) 62, 1016
Csp6I GTAC 3 cut(s) 102, 443, 739
CspCI CAANNNNNGTGG 4 cut(s) 572, 594, 607, 629
CviQI GTAC 3 cut(s) 102, 443, 739
DdeI CTNAG 1 cut(s) 829
DpnI GATC 6 cut(s) 336, 363, 780, 786, 821, 985
DpnII GATC 6 cut(s) 334, 361, 778, 784, 819, 983
EaeI YGGCCR 2 cut(s) 450, 1029
Ecl136II GAGCTC 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 879
Eco24I GRGCYC 1 cut(s) 186
Eco53kI GAGCTC 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 879
EcoT22I ATGCAT 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 879
FalI AAGNNNNNCTT 4 cut(s) 171, 203, 591, 623
FaqI GGGAC 2 cut(s) 163, 392
FauNDI CATATG 1 cut(s) 292
FbaI TGATCA 2 cut(s) 361, 819
Fnu4HI GCNGC 5 cut(s) 37, 40, 504, 953, 956
FokI GGATG 5 cut(s) 220, 243, 444, 668, 932
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 5 cut(s) 37, 40, 504, 953, 956
FspBI CTAG 2 cut(s) 11, 312
GluI GCNGC 5 cut(s) 37, 40, 504, 953, 956
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 4 cut(s) 64, 452, 1017, 1031
HapII CCGG 2 cut(s) 453, 565
HincII GTYRAC 2 cut(s) 679, 847
HindII GTYRAC 2 cut(s) 679, 847
HindIII AAGCTT 1 cut(s) 168
HinfI GANTC 5 cut(s) 250, 526, 634, 687, 848
HpaII CCGG 2 cut(s) 453, 565
Hpy166II GTNNAC 4 cut(s) 679, 691, 739, 847
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 7 cut(s) 191, 353, 403, 731, 760, 782, 981
Hpy8I GTNNAC 4 cut(s) 679, 691, 739, 847
Hpy99I CGWCG 1 cut(s) 779
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 3 cut(s) 447, 478, 702
HpyCH4V TGCA 7 cut(s) 91, 234, 481, 611, 698, 710, 856
HpyF3I CTNAG 1 cut(s) 829
Ksp22I TGATCA 2 cut(s) 361, 819
Kzo9I GATC 6 cut(s) 334, 361, 778, 784, 819, 983
LmnI GCTCC 3 cut(s) 47, 157, 189
Lsp1109I GCAGC 5 cut(s) 48, 51, 515, 964, 967
LweI GCATC 6 cut(s) 78, 221, 445, 466, 646, 954
MaeI CTAG 2 cut(s) 11, 312
MaeIII GTNAC 1 cut(s) 53
MalI GATC 6 cut(s) 336, 363, 780, 786, 821, 985
MboI GATC 6 cut(s) 334, 361, 778, 784, 819, 983
MboII GAAGA 4 cut(s) 143, 341, 407, 629
MfeI CAATTG 2 cut(s) 589, 705
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 2 cut(s) 83, 186
MlsI TGGCCA 1 cut(s) 1031
MluCI AATT 7 cut(s) 29, 73, 258, 589, 705, 893, 930
MluNI TGGCCA 1 cut(s) 1031
MlyI GAGTC 2 cut(s) 696, 842
MnlI CCTC 6 cut(s) 18, 139, 198, 204, 471, 947
Mox20I TGGCCA 1 cut(s) 1031
Mph1103I ATGCAT 1 cut(s) 93
MroXI GAANNNNTTC 1 cut(s) 249
MscI TGGCCA 1 cut(s) 1031
MseI TTAA 5 cut(s) 138, 800, 933, 971, 1036
MslI CAYNNNNRTG 4 cut(s) 86, 351, 357, 884
Msp20I TGGCCA 1 cut(s) 1031
MspI CCGG 2 cut(s) 453, 565
MspR9I CCNGG 2 cut(s) 128, 454
MunI CAATTG 2 cut(s) 589, 705
Mva1269I GAATGC 2 cut(s) 91, 219
MvaI CCWGG 1 cut(s) 128
NciI CCSGG 1 cut(s) 454
NcoI CCATGG 1 cut(s) 879
NdeI CATATG 1 cut(s) 292
NdeII GATC 6 cut(s) 334, 361, 778, 784, 819, 983
NlaIV GGNNCC 1 cut(s) 63
NsiI ATGCAT 1 cut(s) 93
NspI RCATGY 3 cut(s) 865, 920, 979
PagI TCATGA 3 cut(s) 190, 352, 730
PciI ACATGT 2 cut(s) 861, 975
PctI GAATGC 2 cut(s) 91, 219
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 3 cut(s) 250, 526, 634
PfoI TCCNGGA 1 cut(s) 126
PkrI GCNGC 5 cut(s) 38, 41, 505, 954, 957
Ple19I CGATCG 1 cut(s) 781
PleI GAGTC 2 cut(s) 695, 842
PpsI GAGTC 2 cut(s) 695, 842
PscI ACATGT 2 cut(s) 861, 975
PsiI TTATAA 1 cut(s) 663
Psp124BI GAGCTC 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 2 cut(s) 62, 1016
PsuI RGATCY 1 cut(s) 334
PvuI CGATCG 1 cut(s) 781
RsaI GTAC 3 cut(s) 103, 444, 740
RsaNI GTAC 3 cut(s) 102, 443, 739
RseI CAYNNNNRTG 4 cut(s) 86, 351, 357, 884
SacI GAGCTC 1 cut(s) 186
SaqAI TTAA 5 cut(s) 138, 800, 933, 971, 1036
SatI GCNGC 5 cut(s) 37, 40, 504, 953, 956
Sau3AI GATC 6 cut(s) 334, 361, 778, 784, 819, 983
Sau96I GGNCC 2 cut(s) 62, 1016
SchI GAGTC 2 cut(s) 696, 842
ScrFI CCNGG 2 cut(s) 128, 454
SduI GDGCHC 2 cut(s) 83, 186
SetI ASST 9 cut(s) 44, 172, 186, 229, 274, 317, 755, 939, 960
SfaNI GCATC 6 cut(s) 78, 221, 445, 466, 646, 954
SmiMI CAYNNNNRTG 4 cut(s) 86, 351, 357, 884
Sse9I AATT 7 cut(s) 29, 73, 258, 589, 705, 893, 930
SspMI CTAG 2 cut(s) 11, 312
SstI GAGCTC 1 cut(s) 186
StyD4I CCNGG 2 cut(s) 126, 452
StyI CCWWGG 1 cut(s) 879
TaaI ACNGT 3 cut(s) 447, 478, 702
TaqI TCGA 1 cut(s) 939
TasI AATT 7 cut(s) 29, 73, 258, 589, 705, 893, 930
TatI WGTACW 2 cut(s) 442, 738
TfiI GAWTC 3 cut(s) 250, 526, 634
Tru1I TTAA 5 cut(s) 138, 800, 933, 971, 1036
Tru9I TTAA 5 cut(s) 138, 800, 933, 971, 1036
TscAI CASTG 3 cut(s) 159, 483, 653
TseI GCWGC 5 cut(s) 36, 39, 503, 952, 955
TspDTI ATGAA 8 cut(s) 84, 179, 207, 251, 335, 341, 500, 719
TspRI CASTG 3 cut(s) 159, 483, 653
XapI RAATTY 2 cut(s) 73, 893
XceI RCATGY 3 cut(s) 865, 920, 979
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 2 cut(s) 11, 312
Zsp2I ATGCAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.