Rh6AG494800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000442
Physical Location & Seq
Reverse (-)
67107114 .. 67107695
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG494800.1

Sequence Viewer

Length: 582 bp
ATGACTCTGACTCTCTCGAGAGAGAAATATCGCCTGTCTCTTTCTTGGGAAAGCGGCGACAAAACTACTCGTCTGCTTCTCTCTTCTGGTTGTGACGGCGACAAATCTTGCCGTCAGACTCTATCTTCTGTTAGAGGAGGCATATTTGCTGTATTTGATGGTGATTGGGTTCTAGTTCACTGGATCTGGTTTGGTGGAAGATTTCCAATTGGCAGTGATGTCGATCCGACTAATTGTGCTGGAGGTTGGCATGCACAGAGCAGTGGATTGTTTCCTATATCTGTTGGCGGTGATGATTGCGGAGGCTTCTGTGTCGACGACGGCAATTTGGTGTGGGCTACCGACGACGTGGTGCAATGCCCAGATGACCTTGTTGGATCGCAATTGGTTTTAGGTCAGGGATGTGACCGGATCTGGTTTTGTGAAGACGTAAAGGATCCTGATCTTGGAGGCGGCACTAGGGTCGAGATTTTGGGATGGTCGGAGATGACAGCTAGGGATTGGGATGAGGAAAGCTTCGTTTTTCTTGCAGATATGGTGATGGCTTGTCCTGCTGGATGGCAACTAGCAGAGTCCGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.02

Weight (kDa)

4.16

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 315
AciI CCGC 4 cut(s) 54, 288, 300, 453
AclWI GGATC 6 cut(s) 191, 218, 385, 419, 431, 444
AfiI CCNNNNNNNGG 1 cut(s) 446
AjiI CACGTC 1 cut(s) 349
AluBI AGCT 2 cut(s) 494, 516
AluI AGCT 2 cut(s) 494, 516
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 6 cut(s) 191, 218, 385, 419, 431, 444
Ama87I CYCGRG 1 cut(s) 16
AsuHPI GGTGA 3 cut(s) 173, 302, 550
AvaI CYCGRG 1 cut(s) 16
BamHI GGATCC 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 432
BccI CCATC 4 cut(s) 152, 471, 535, 552
BceAI ACGGC 3 cut(s) 96, 112, 337
BcgI CGANNNNNNTGC 4 cut(s) 202, 236, 445, 479
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 4 cut(s) 173, 459, 495, 566
BisI GCNGC 2 cut(s) 55, 454
BlsI GCNGC 2 cut(s) 56, 455
BmeT110I CYCGRG 1 cut(s) 16
BmgBI CACGTC 1 cut(s) 349
BmiI GGNNCC 1 cut(s) 438
BpiI GAAGAC 1 cut(s) 432
BpmI CTGGAG 1 cut(s) 261
BsaBI GATNNNNATC 2 cut(s) 222, 441
BsaWI WCCGGW 1 cut(s) 408
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse1I ACTGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 362
Bse8I GATNNNNATC 2 cut(s) 222, 441
BseGI GGATG 4 cut(s) 407, 482, 511, 563
BseJI GATNNNNATC 2 cut(s) 222, 441
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMI GCAATG 1 cut(s) 362
BseNI ACTGG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 16
BsiSI CCGG 1 cut(s) 409
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 16
Bsp143I GATC 6 cut(s) 183, 223, 377, 411, 436, 442
BspACI CCGC 4 cut(s) 54, 288, 300, 453
BspLI GGNNCC 1 cut(s) 438
BspPI GGATC 6 cut(s) 191, 218, 385, 419, 431, 444
BsrDI GCAATG 1 cut(s) 362
BsrI ACTGG 1 cut(s) 185
BssMI GATC 6 cut(s) 183, 223, 377, 411, 436, 442
Bst6I CTCTTC 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 252
BstF5I GGATG 4 cut(s) 407, 482, 511, 563
BstKTI GATC 6 cut(s) 186, 226, 380, 414, 439, 445
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 6 cut(s) 183, 223, 377, 411, 436, 442
BstMWI GCNNNNNNNGC 1 cut(s) 551
BstNSI RCATGY 1 cut(s) 254
BstV2I GAAGAC 1 cut(s) 432
BstX2I RGATCY 3 cut(s) 183, 411, 436
BstYI RGATCY 3 cut(s) 183, 411, 436
BtrI CACGTC 1 cut(s) 349
BtsCI GGATG 4 cut(s) 407, 482, 511, 563
BtsI GCAGTG 2 cut(s) 220, 268
BtsIMutI CAGTG 3 cut(s) 178, 220, 268
Cac8I GCNNGC 1 cut(s) 252
CviAII CATG 1 cut(s) 251
CviJI RGCY 5 cut(s) 306, 338, 494, 516, 545
CviKI_1 RGCY 5 cut(s) 306, 338, 494, 516, 545
DpnI GATC 6 cut(s) 185, 225, 379, 413, 438, 444
DpnII GATC 6 cut(s) 183, 223, 377, 411, 436, 442
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 16
FaeI CATG 1 cut(s) 254
FaiI YATR 4 cut(s) 143, 252, 278, 536
FatI CATG 1 cut(s) 250
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 55, 454
FokI GGATG 4 cut(s) 414, 489, 518, 570
Fsp4HI GCNGC 2 cut(s) 55, 454
FspBI CTAG 4 cut(s) 173, 459, 495, 566
GluI GCNGC 2 cut(s) 55, 454
GsuI CTGGAG 1 cut(s) 261
HapII CCGG 1 cut(s) 409
Hin1II CATG 1 cut(s) 254
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 514
HinfI GANTC 4 cut(s) 4, 10, 118, 572
HpaII CCGG 1 cut(s) 409
HphI GGTGA 3 cut(s) 173, 302, 550
Hpy166II GTNNAC 2 cut(s) 178, 316
Hpy188I TCNGA 4 cut(s) 9, 117, 228, 484
Hpy188III TCNNGA 4 cut(s) 16, 18, 440, 466
Hpy8I GTNNAC 2 cut(s) 178, 316
Hpy99I CGWCG 4 cut(s) 320, 323, 347, 350
HpyCH4IV ACGT 2 cut(s) 348, 429
HpyCH4V TGCA 3 cut(s) 254, 355, 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 551
HpySE526I ACGT 2 cut(s) 348, 429
Hsp92II CATG 1 cut(s) 254
Kzo9I GATC 6 cut(s) 183, 223, 377, 411, 436, 442
MaeI CTAG 4 cut(s) 173, 459, 495, 566
MaeII ACGT 2 cut(s) 348, 429
MaeIII GTNAC 2 cut(s) 92, 404
MalI GATC 6 cut(s) 185, 225, 379, 413, 438, 444
MboI GATC 6 cut(s) 183, 223, 377, 411, 436, 442
MboII GAAGA 4 cut(s) 75, 117, 210, 437
MfeI CAATTG 2 cut(s) 207, 383
MflI RGATCY 3 cut(s) 183, 411, 436
MluCI AATT 4 cut(s) 207, 232, 325, 383
MlyI GAGTC 3 cut(s) 4, 112, 581
MmeI TCCRAC 3 cut(s) 251, 355, 462
MnlI CCTC 6 cut(s) 128, 131, 236, 296, 443, 502
MspI CCGG 1 cut(s) 409
MunI CAATTG 2 cut(s) 207, 383
MwoI GCNNNNNNNGC 1 cut(s) 551
NdeII GATC 6 cut(s) 183, 223, 377, 411, 436, 442
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 1 cut(s) 438
NmuCI GTSAC 2 cut(s) 92, 404
NspI RCATGY 1 cut(s) 254
PaeI GCATGC 1 cut(s) 254
PaeR7I CTCGAG 1 cut(s) 16
PkrI GCNGC 2 cut(s) 56, 455
PleI GAGTC 3 cut(s) 4, 112, 580
PpsI GAGTC 3 cut(s) 4, 112, 580
PspN4I GGNNCC 1 cut(s) 438
PsuI RGATCY 3 cut(s) 183, 411, 436
SalI GTCGAC 1 cut(s) 314
SatI GCNGC 2 cut(s) 55, 454
Sau3AI GATC 6 cut(s) 183, 223, 377, 411, 436, 442
SchI GAGTC 3 cut(s) 4, 112, 581
SetI ASST 7 cut(s) 247, 351, 372, 397, 432, 496, 518
Sfr274I CTCGAG 1 cut(s) 16
SlaI CTCGAG 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
SphI GCATGC 1 cut(s) 254
Sse9I AATT 4 cut(s) 207, 232, 325, 383
SsiI CCGC 4 cut(s) 54, 288, 300, 453
SspMI CTAG 4 cut(s) 173, 459, 495, 566
TaiI ACGT 2 cut(s) 351, 432
TaqI TCGA 4 cut(s) 17, 222, 315, 465
TasI AATT 4 cut(s) 207, 232, 325, 383
TauI GCSGC 2 cut(s) 57, 456
TscAI CASTG 3 cut(s) 185, 220, 268
TseFI GTSAC 2 cut(s) 92, 404
Tsp45I GTSAC 2 cut(s) 92, 404
TspGWI ACGGA 1 cut(s) 565
TspRI CASTG 3 cut(s) 185, 220, 268
XceI RCATGY 1 cut(s) 254
XhoI CTCGAG 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 4 cut(s) 173, 459, 495, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.