Rh4AG104800
ERF Family

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000442
Physical Location & Seq
Reverse (-)
22558472 .. 22569827
11356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG104800.1

Sequence Viewer

Length: 294 bp
ATGGCGTCAGAGGAAATCCGAAATGTTTCAGAAGGATATCCAATGAAAGGTGGAGATGGCCCCGATAGCTATGCCAAGAACTCTACTTACCAGATCTGGTTTGGTGGAAGATTTCCAATCGGCAGTGATGTCGATCCGACGAACTGTGCTGGTGGTTGGCATGCGCAGAGTGGTGGGCTGATTCACATATCTACTGGCAGTGATGATTGCGGCGGCTTCTGTGCCGACGGCGGCAATTTGGGTTGGGCTACCGATGGTGTGGTGTGTTGTCCAGATGGCTTTGCTAGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

97

Amino Acids

10.01

Weight (kDa)

4.32

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 165
AciI CCGC 3 cut(s) 210, 213, 231
AclWI GGATC 1 cut(s) 128
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 47
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
AlwI GGATC 1 cut(s) 128
AoxI GGCC 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 59
BccI CCATC 3 cut(s) 50, 248, 269
BceAI ACGGC 1 cut(s) 244
BcgI CGANNNNNNTGC 4 cut(s) 53, 87, 112, 146
BfaI CTAG 1 cut(s) 285
BglII AGATCT 1 cut(s) 93
BisI GCNGC 3 cut(s) 211, 214, 232
BlsI GCNGC 3 cut(s) 212, 215, 233
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 61
BsaBI GATNNNNATC 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 199
Bse8I GATNNNNATC 1 cut(s) 132
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 199
BshFI GGCC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 47
BsnI GGCC 1 cut(s) 60
Bsp143I GATC 3 cut(s) 93, 133, 287
BspACI CCGC 3 cut(s) 210, 213, 231
BspANI GGCC 1 cut(s) 60
BspHI TCATGA 1 cut(s) 290
BspLI GGNNCC 1 cut(s) 61
BspPI GGATC 1 cut(s) 128
BsrI ACTGG 1 cut(s) 199
BssMI GATC 3 cut(s) 93, 133, 287
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 1 cut(s) 146
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 162
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 3 cut(s) 96, 136, 290
BstMBI GATC 3 cut(s) 93, 133, 287
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstNSI RCATGY 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuRI GGCC 1 cut(s) 60
BtsI GCAGTG 2 cut(s) 130, 205
BtsIMutI CAGTG 2 cut(s) 130, 205
Cac8I GCNNGC 1 cut(s) 162
CciI TCATGA 1 cut(s) 290
CfoI GCGC 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 59
CviAII CATG 2 cut(s) 161, 291
CviJI RGCY 6 cut(s) 60, 69, 178, 216, 248, 279
CviKI_1 RGCY 6 cut(s) 60, 69, 178, 216, 248, 279
DpnI GATC 3 cut(s) 95, 135, 289
DpnII GATC 3 cut(s) 93, 133, 287
Eco32I GATATC 1 cut(s) 38
EcoRV GATATC 1 cut(s) 38
FaeI CATG 2 cut(s) 164, 294
FaiI YATR 4 cut(s) 72, 162, 188, 292
FatI CATG 2 cut(s) 160, 290
Fnu4HI GCNGC 3 cut(s) 211, 214, 232
Fsp4HI GCNGC 3 cut(s) 211, 214, 232
FspBI CTAG 1 cut(s) 285
FspI TGCGCA 1 cut(s) 165
GlaI GCGC 1 cut(s) 165
GluI GCNGC 3 cut(s) 211, 214, 232
HaeIII GGCC 1 cut(s) 60
HhaI GCGC 1 cut(s) 166
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 164, 294
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HinfI GANTC 1 cut(s) 181
Hpy188I TCNGA 4 cut(s) 10, 20, 31, 138
Hpy188III TCNNGA 2 cut(s) 272, 291
Hpy99I CGWCG 2 cut(s) 142, 230
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 164, 294
HspAI GCGC 1 cut(s) 164
Kzo9I GATC 3 cut(s) 93, 133, 287
LpnPI CCDG 5 cut(s) 82, 104, 135, 180, 285
MaeI CTAG 1 cut(s) 285
MalI GATC 3 cut(s) 95, 135, 289
MboI GATC 3 cut(s) 93, 133, 287
MboII GAAGA 1 cut(s) 120
MflI RGATCY 1 cut(s) 93
MluCI AATT 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 1 cut(s) 4
MroXI GAANNNNTTC 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 66
NdeII GATC 3 cut(s) 93, 133, 287
NlaIII CATG 2 cut(s) 164, 294
NlaIV GGNNCC 1 cut(s) 61
NsbI TGCGCA 1 cut(s) 165
NspI RCATGY 1 cut(s) 164
PaeI GCATGC 1 cut(s) 164
PagI TCATGA 1 cut(s) 290
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 3 cut(s) 212, 215, 233
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 59
PsrI GAACNNNNNNTAC 2 cut(s) 71, 103
PsuI RGATCY 1 cut(s) 93
SatI GCNGC 3 cut(s) 211, 214, 232
Sau3AI GATC 3 cut(s) 93, 133, 287
Sau96I GGNCC 1 cut(s) 59
SetI ASST 2 cut(s) 52, 71
SgeI CNNG 8 cut(s) 74, 88, 103, 109, 162, 173, 207, 284
SphI GCATGC 1 cut(s) 164
Sse9I AATT 1 cut(s) 235
SsiI CCGC 3 cut(s) 210, 213, 231
SspMI CTAG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 146
TaqI TCGA 1 cut(s) 132
TasI AATT 1 cut(s) 235
TauI GCSGC 3 cut(s) 213, 216, 234
TfiI GAWTC 1 cut(s) 181
TscAI CASTG 2 cut(s) 130, 205
TspDTI ATGAA 1 cut(s) 59
TspRI CASTG 2 cut(s) 130, 205
XceI RCATGY 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.