RLG00000033172

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000442
Physical Location & Seq
Forward (+)
24080453 .. 24082480
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033172

Sequence Viewer

Length: 666 bp
ATGGGCAGTGATGTCGATCCGACGAACTGTGTTGGAGGTTGGCATGTGCAGAGCGGTGGGCTAATTCCCATCTCTGTTGGTGATGATGATTGCGGTGGCTTCTGTGCCAACGGCAGCAATTTGGTTTGGGTTACCGACGGCGAGGTGCGATGCCCAGATGGCTTTGATGGATCGCGATCAGCTTTAGGTCGGGGATGTGACCAGATCTGGTTTTGTGGAGATGCAAAGGATCCTGATCTTGGTGCCGGCGTTGGGGTCACCATTTTGGGATGGTCGGAGATGACAGACGAGGAAGACTTCGTTTCTCCCGTAGATACGGTGATGGCTTGTCCTGCTGGATGGCATCTGACAGAGTCCGTCCATTGTCATGGTTTGGCGGGGAAGCTTCTCTCTCTGCGATCAGCCTGGATGGCGTGTGTCGGTGTCCGAATTGGTAGGGAAGACGATGTTGAGCCGTCTGTGTTAGGCAGTAGCAAAGTTGGCAGCGGCTGCGGGGTGTTTCCCTCGACTGGAATCGGCGACGGCGCAGCTGATGCCAAAGCAGATGATCAATTTGGTGTTCCTACAACAAGAGAATGTCATATTCTATACAATGCAATAAATGAAAAAGGAATTCTTTCATTAGACAATCTTGTCTCATCACACAATGGTACATGGAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

23.02

Weight (kDa)

4.43

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 632
AccB1I GGYRCC 1 cut(s) 242
AccBSI CCGCTC 1 cut(s) 54
AccII CGCG 1 cut(s) 175
AciI CCGC 5 cut(s) 54, 93, 377, 486, 492
AclWI GGATC 4 cut(s) 11, 178, 224, 237
AcsI RAATTY 1 cut(s) 612
AfaI GTAC 1 cut(s) 652
AfiI CCNNNNNNNGG 3 cut(s) 239, 252, 509
AjnI CCWGG 1 cut(s) 404
AluBI AGCT 3 cut(s) 182, 385, 530
AluI AGCT 3 cut(s) 182, 385, 530
Alw26I GTCTC 1 cut(s) 640
AlwI GGATC 4 cut(s) 11, 178, 224, 237
AlwNI CAGNNNCTG 1 cut(s) 489
ApeKI GCWGC 4 cut(s) 114, 483, 489, 527
ApoI RAATTY 1 cut(s) 612
Asp700I GAANNNNTTC 1 cut(s) 616
AspLEI GCGC 1 cut(s) 527
AsuHPI GGTGA 3 cut(s) 92, 250, 331
BamHI GGATCC 1 cut(s) 229
BanI GGYRCC 1 cut(s) 242
BbsI GAAGAC 2 cut(s) 300, 447
BbvI GCAGC 4 cut(s) 126, 476, 495, 539
BccI CCATC 7 cut(s) 77, 152, 161, 264, 316, 333, 403
BceAI ACGGC 4 cut(s) 127, 154, 439, 538
BcgI CGANNNNNNTGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 406
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 1 cut(s) 640
BglI GCCNNNNNGGC 2 cut(s) 159, 410
BglII AGATCT 1 cut(s) 204
BisI GCNGC 5 cut(s) 115, 484, 487, 490, 528
BlsI GCNGC 5 cut(s) 116, 485, 488, 491, 529
Bme1390I CCNGG 1 cut(s) 406
BmiI GGNNCC 2 cut(s) 231, 244
BmrFI CCNGG 1 cut(s) 406
BmsI GCATC 4 cut(s) 140, 211, 352, 523
BpiI GAAGAC 2 cut(s) 300, 447
BsaBI GATNNNNATC 3 cut(s) 15, 175, 234
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 252, 509
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 514
Bse8I GATNNNNATC 3 cut(s) 15, 175, 234
BseBI CCWGG 1 cut(s) 406
BseGI GGATG 4 cut(s) 200, 275, 344, 414
BseJI GATNNNNATC 3 cut(s) 15, 175, 234
BseLI CCNNNNNNNGG 3 cut(s) 239, 252, 509
BseNI ACTGG 1 cut(s) 514
BseXI GCAGC 4 cut(s) 126, 476, 495, 539
BsgI GTGCAG 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 175
BshNI GGYRCC 1 cut(s) 242
BsiSI CCGG 1 cut(s) 246
BslI CCNNNNNNNGG 3 cut(s) 239, 252, 509
BsmAI GTCTC 1 cut(s) 640
Bsp143I GATC 8 cut(s) 16, 170, 176, 204, 229, 235, 398, 547
Bsp68I TCGCGA 1 cut(s) 175
BspACI CCGC 5 cut(s) 54, 93, 377, 486, 492
BspFNI CGCG 1 cut(s) 175
BspLI GGNNCC 2 cut(s) 231, 244
BspPI GGATC 4 cut(s) 11, 178, 224, 237
BspT107I GGYRCC 1 cut(s) 242
BsrBI CCGCTC 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 1 cut(s) 514
BssAI RCCGGY 1 cut(s) 245
BssMI GATC 8 cut(s) 16, 170, 176, 204, 229, 235, 398, 547
Bst2UI CCWGG 1 cut(s) 406
Bst4CI ACNGT 2 cut(s) 29, 319
Bst6I CTCTTC 1 cut(s) 653
BstAPI GCANNNNNTGC 2 cut(s) 489, 533
BstC8I GCNNGC 1 cut(s) 247
BstEII GGTNACC 2 cut(s) 130, 256
BstF5I GGATG 4 cut(s) 200, 275, 344, 414
BstFNI CGCG 1 cut(s) 175
BstHHI GCGC 1 cut(s) 527
BstKTI GATC 8 cut(s) 19, 173, 179, 207, 232, 238, 401, 550
BstMAI GTCTC 1 cut(s) 640
BstMBI GATC 8 cut(s) 16, 170, 176, 204, 229, 235, 398, 547
BstMWI GCNNNNNNNGC 6 cut(s) 159, 332, 410, 480, 489, 533
BstNI CCWGG 1 cut(s) 406
BstNSI RCATGY 1 cut(s) 47
BstPI GGTNACC 2 cut(s) 130, 256
BstSCI CCNGG 1 cut(s) 404
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 4 cut(s) 126, 476, 495, 539
BstV2I GAAGAC 2 cut(s) 300, 447
BstX2I RGATCY 2 cut(s) 204, 229
BstXI CCANNNNNNTGG 1 cut(s) 368
BstYI RGATCY 2 cut(s) 204, 229
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 4 cut(s) 200, 275, 344, 414
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 13
BtuMI TCGCGA 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 247
CaiI CAGNNNCTG 1 cut(s) 489
CfoI GCGC 1 cut(s) 527
Cfr10I RCCGGY 1 cut(s) 245
Csp6I GTAC 1 cut(s) 651
CviAII CATG 3 cut(s) 44, 368, 654
CviQI GTAC 1 cut(s) 651
DpnI GATC 8 cut(s) 18, 172, 178, 206, 231, 237, 400, 549
DpnII GATC 8 cut(s) 16, 170, 176, 204, 229, 235, 398, 547
DrdI GACNNNNNNGTC 1 cut(s) 632
DseDI GACNNNNNNGTC 1 cut(s) 632
Eam1104I CTCTTC 1 cut(s) 653
EarI CTCTTC 1 cut(s) 653
Eco91I GGTNACC 2 cut(s) 130, 256
EcoO65I GGTNACC 2 cut(s) 130, 256
EcoRI GAATTC 1 cut(s) 612
EcoRII CCWGG 1 cut(s) 404
FaeI CATG 3 cut(s) 47, 371, 657
FaiI YATR 5 cut(s) 45, 369, 582, 589, 655
FalI AAGNNNNNCTT 2 cut(s) 600, 632
FatI CATG 3 cut(s) 43, 367, 653
FauI CCCGC 2 cut(s) 370, 485
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 5 cut(s) 115, 484, 487, 490, 528
FokI GGATG 4 cut(s) 207, 282, 351, 421
Fsp4HI GCNGC 5 cut(s) 115, 484, 487, 490, 528
GlaI GCGC 1 cut(s) 526
GluI GCNGC 5 cut(s) 115, 484, 487, 490, 528
HapII CCGG 1 cut(s) 246
HhaI GCGC 1 cut(s) 527
Hin1II CATG 3 cut(s) 47, 371, 657
Hin6I GCGC 1 cut(s) 525
HinP1I GCGC 1 cut(s) 525
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 2 cut(s) 353, 513
HpaII CCGG 1 cut(s) 246
HphI GGTGA 3 cut(s) 92, 250, 331
Hpy188I TCNGA 4 cut(s) 21, 277, 348, 428
Hpy188III TCNNGA 2 cut(s) 174, 233
Hpy99I CGWCG 3 cut(s) 25, 140, 524
HpyCH4III ACNGT 2 cut(s) 29, 319
HpyCH4V TGCA 3 cut(s) 49, 224, 596
HpyF10VI GCNNNNNNNGC 6 cut(s) 159, 332, 410, 480, 489, 533
Hsp92II CATG 3 cut(s) 47, 371, 657
HspAI GCGC 1 cut(s) 525
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 8 cut(s) 16, 170, 176, 204, 229, 235, 398, 547
Lsp1109I GCAGC 4 cut(s) 126, 476, 495, 539
LweI GCATC 4 cut(s) 140, 211, 352, 523
MaeIII GTNAC 3 cut(s) 130, 197, 256
MalI GATC 8 cut(s) 18, 172, 178, 206, 231, 237, 400, 549
MbiI CCGCTC 1 cut(s) 54
MboI GATC 8 cut(s) 16, 170, 176, 204, 229, 235, 398, 547
MboII GAAGA 2 cut(s) 305, 452
MflI RGATCY 2 cut(s) 204, 229
MluCI AATT 5 cut(s) 63, 118, 429, 551, 612
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 3 cut(s) 13, 44, 255
MnlI CCTC 4 cut(s) 29, 136, 283, 514
MroNI GCCGGC 1 cut(s) 245
MroXI GAANNNNTTC 1 cut(s) 616
MslI CAYNNNNRTG 1 cut(s) 366
MspA1I CMGCKG 2 cut(s) 486, 530
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 1 cut(s) 406
MvaI CCWGG 1 cut(s) 406
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 6 cut(s) 159, 332, 410, 480, 489, 533
NaeI GCCGGC 1 cut(s) 247
NdeII GATC 8 cut(s) 16, 170, 176, 204, 229, 235, 398, 547
NgoMIV GCCGGC 1 cut(s) 245
NlaIII CATG 3 cut(s) 47, 371, 657
NlaIV GGNNCC 2 cut(s) 231, 244
NmuCI GTSAC 2 cut(s) 197, 256
NruI TCGCGA 1 cut(s) 175
NspI RCATGY 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PdiI GCCGGC 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 616
PfeI GAWTC 1 cut(s) 513
PflFI GACNNNGTC 1 cut(s) 352
PkrI GCNGC 5 cut(s) 116, 485, 488, 491, 529
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
Psp6I CCWGG 1 cut(s) 404
PspEI GGTNACC 2 cut(s) 130, 256
PspGI CCWGG 1 cut(s) 404
PspN4I GGNNCC 2 cut(s) 231, 244
PstNI CAGNNNCTG 1 cut(s) 489
PsuI RGATCY 2 cut(s) 204, 229
PsyI GACNNNGTC 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 530
RruI TCGCGA 1 cut(s) 175
RsaI GTAC 1 cut(s) 652
RsaNI GTAC 1 cut(s) 651
RseI CAYNNNNRTG 1 cut(s) 366
SatI GCNGC 5 cut(s) 115, 484, 487, 490, 528
Sau3AI GATC 8 cut(s) 16, 170, 176, 204, 229, 235, 398, 547
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 1 cut(s) 406
SetI ASST 6 cut(s) 40, 147, 184, 190, 387, 532
SfaNI GCATC 4 cut(s) 140, 211, 352, 523
SmiMI CAYNNNNRTG 1 cut(s) 366
Sse9I AATT 5 cut(s) 63, 118, 429, 551, 612
SsiI CCGC 5 cut(s) 54, 93, 377, 486, 492
StyD4I CCNGG 1 cut(s) 404
TaaI ACNGT 2 cut(s) 29, 319
TaqI TCGA 2 cut(s) 15, 506
TasI AATT 5 cut(s) 63, 118, 429, 551, 612
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 1 cut(s) 513
TscAI CASTG 1 cut(s) 13
TseFI GTSAC 2 cut(s) 197, 256
TseI GCWGC 4 cut(s) 114, 483, 489, 527
Tsp45I GTSAC 2 cut(s) 197, 256
TspDTI ATGAA 2 cut(s) 609, 618
TspGWI ACGGA 1 cut(s) 346
TspRI CASTG 1 cut(s) 13
Tth111I GACNNNGTC 1 cut(s) 352
XapI RAATTY 1 cut(s) 612
XceI RCATGY 1 cut(s) 47
XmnI GAANNNNTTC 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.