Rh2BG644200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000442
Physical Location & Seq
Reverse (-)
86343104 .. 86344835
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG644200.1

Sequence Viewer

Length: 804 bp
ATGGATGTCATTGAAAACATCCGTTCAAAAAGGGAGATGGGCATTGTTGGTGGATCCGTAGCTTTAAATCACATTAAAGTGATCGGTTCTAGAGCTAGACTTCCACAAGATGATTACAACTCCATGGTGCACAAGAATTATATTGAAGGCTACAAAGATTTCTTTGACGATTTATTTGGAGGCAGTAGTGAACCATTGGACGACGAGAATTATATAGACATCAAGGCATATGTGAAGGATCTGAAGACAATAGACCAAATGTTAGTGCTGCTTCGCCACCCTTATTTTCAATCAGTGGATGAAGCTCTGAGATTCATTCCATCCACCCTTAAAGAACTTGATGGCTTAAGGGGTAAAACGTTTCCACTTCCAAGAACTGGGGCTAATCAAGCAACCCCCGATCTATTGCTAGTGCCTGACGAACGTCATGTCGATTGGAAACGTGCATACATGCATCTATGCCGCACAAAGAGAGAGAATATTTCAGAGTCAATTGGCAGAATTGAATCTGAAGATTACAGACGTGGATTTACGTCTCTATATAATGCTGGAAAGAATGGCACACCGTATGAAGATACCAATGAGATAGATGAGCTGAAGTTTTATGCAAACGTCTGTCAAAATCTAGTAAGATATATGAAGATACGTAGCGAAGGTGATTTATACCAAGCCTTGTGTCGGGCGTTTCCAGACGTGCCCACAAAAGTGTTCAAGTTATTCTGGACCTATGACGGGCAAGTTAACTTGGACTTTGTCAGGCCTCTGATGAGCCTTTTTAAAAAGAAAGAGCGGATCTACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

31.09

Weight (kDa)

6.54

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 377
AccBSI CCGCTC 1 cut(s) 790
AciI CCGC 2 cut(s) 463, 790
AclI AACGTT 1 cut(s) 359
AclWI GGATC 4 cut(s) 48, 61, 246, 800
AcuI CTGAAG 3 cut(s) 263, 531, 617
AfiI CCNNNNNNNGG 3 cut(s) 377, 678, 732
AflII CTTAAG 1 cut(s) 346
AgsI TTSAA 6 cut(s) 14, 27, 146, 290, 506, 712
AjiI CACGTC 2 cut(s) 524, 694
AleI CACNNNNGTG 1 cut(s) 704
AluBI AGCT 4 cut(s) 62, 95, 305, 595
AluI AGCT 4 cut(s) 62, 95, 305, 595
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 540
Alw44I GTGCAC 1 cut(s) 128
AlwI GGATC 4 cut(s) 48, 61, 246, 800
AoxI GGCC 1 cut(s) 758
ApaLI GTGCAC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 268
ArsI GACNNNNNNTTYG 4 cut(s) 158, 190, 414, 446
AspS9I GGNCC 1 cut(s) 723
AsuHPI GGTGA 1 cut(s) 668
AvaII GGWCC 1 cut(s) 723
BaeGI GKGCMC 2 cut(s) 132, 699
BamHI GGATCC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 255
BccI CCATC 3 cut(s) 31, 328, 335
BcoDI GTCTC 1 cut(s) 540
BfaI CTAG 4 cut(s) 90, 96, 410, 626
BfrI CTTAAG 1 cut(s) 346
BisI GCNGC 2 cut(s) 269, 463
BlsI GCNGC 2 cut(s) 270, 464
Bme18I GGWCC 1 cut(s) 723
BmgBI CACGTC 2 cut(s) 524, 694
BmgT120I GGNCC 1 cut(s) 723
BmiI GGNNCC 1 cut(s) 55
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 1 cut(s) 463
BmuI ACTGGG 1 cut(s) 387
BoxI GACNNNNGTC 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 251
BsaAI YACGTR 1 cut(s) 647
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 3 cut(s) 377, 678, 732
Bse1I ACTGG 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 4 cut(s) 10, 18, 304, 320
BseLI CCNNNNNNNGG 3 cut(s) 377, 678, 732
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 1 cut(s) 382
BseSI GKGCMC 2 cut(s) 132, 699
BseXI GCAGC 1 cut(s) 255
BshFI GGCC 1 cut(s) 760
BsiHKAI GWGCWC 1 cut(s) 132
BslI CCNNNNNNNGG 3 cut(s) 377, 678, 732
BsmAI GTCTC 1 cut(s) 540
BsmBI CGTCTC 1 cut(s) 540
BsnI GGCC 1 cut(s) 760
Bsp1286I GDGCHC 2 cut(s) 132, 699
Bsp143I GATC 5 cut(s) 53, 81, 238, 400, 792
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 2 cut(s) 463, 790
BspANI GGCC 1 cut(s) 760
BspCNI CTCAG 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 4 cut(s) 48, 61, 246, 800
BspTI CTTAAG 1 cut(s) 346
BsrBI CCGCTC 1 cut(s) 790
BsrI ACTGG 1 cut(s) 382
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 5 cut(s) 53, 81, 238, 400, 792
BssT1I CCWWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 567
BstAFI CTTAAG 1 cut(s) 346
BstBAI YACGTR 1 cut(s) 647
BstDEI CTNAG 1 cut(s) 308
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 4 cut(s) 10, 18, 304, 320
BstKTI GATC 5 cut(s) 56, 84, 241, 403, 795
BstMAI GTCTC 1 cut(s) 540
BstMBI GATC 5 cut(s) 53, 81, 238, 400, 792
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNSI RCATGY 1 cut(s) 454
BstPAI GACNNNNGTC 1 cut(s) 423
BstSLI GKGCMC 2 cut(s) 132, 699
BstSNI TACGTA 1 cut(s) 647
BstV1I GCAGC 1 cut(s) 255
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 3 cut(s) 53, 238, 792
BstYI RGATCY 3 cut(s) 53, 238, 792
BsuRI GGCC 1 cut(s) 760
BtgI CCRYGG 1 cut(s) 123
BtrI CACGTC 2 cut(s) 524, 694
BtsCI GGATG 4 cut(s) 10, 18, 304, 320
BtsIMutI CAGTG 1 cut(s) 300
Cfr13I GGNCC 1 cut(s) 723
CviAII CATG 3 cut(s) 124, 428, 451
DdeI CTNAG 1 cut(s) 308
DpnI GATC 5 cut(s) 55, 83, 240, 402, 794
DpnII GATC 5 cut(s) 53, 81, 238, 400, 792
DraI TTTAAA 2 cut(s) 66, 778
Eco105I TACGTA 1 cut(s) 647
Eco130I CCWWGG 1 cut(s) 123
Eco147I AGGCCT 1 cut(s) 760
Eco47I GGWCC 1 cut(s) 723
Eco57I CTGAAG 3 cut(s) 263, 531, 617
EcoT14I CCWWGG 1 cut(s) 123
EcoT22I ATGCAT 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 123
Esp3I CGTCTC 1 cut(s) 540
FaeI CATG 3 cut(s) 127, 431, 454
FatI CATG 3 cut(s) 123, 427, 450
FauNDI CATATG 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 269, 463
FokI GGATG 4 cut(s) 5, 17, 307, 311
Fsp4HI GCNGC 2 cut(s) 269, 463
FspBI CTAG 4 cut(s) 90, 96, 410, 626
GluI GCNGC 2 cut(s) 269, 463
HaeIII GGCC 1 cut(s) 760
Hin1II CATG 3 cut(s) 127, 431, 454
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HinfI GANTC 3 cut(s) 312, 488, 506
HpaI GTTAAC 1 cut(s) 742
HphI GGTGA 1 cut(s) 668
Hpy166II GTNNAC 3 cut(s) 130, 191, 742
Hpy188I TCNGA 5 cut(s) 243, 309, 487, 511, 765
Hpy188III TCNNGA 3 cut(s) 90, 689, 721
Hpy8I GTNNAC 3 cut(s) 130, 191, 742
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 3 cut(s) 140, 229, 647
HpyCH4III ACNGT 1 cut(s) 567
HpyCH4IV ACGT 8 cut(s) 359, 424, 442, 523, 533, 612, 646, 693
HpyCH4V TGCA 4 cut(s) 130, 446, 454, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 1 cut(s) 308
HpySE526I ACGT 8 cut(s) 359, 424, 442, 523, 533, 612, 646, 693
Hsp92II CATG 3 cut(s) 127, 431, 454
KspAI GTTAAC 1 cut(s) 742
Kzo9I GATC 5 cut(s) 53, 81, 238, 400, 792
LpnPI CCDG 6 cut(s) 363, 429, 534, 702, 706, 742
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 1 cut(s) 463
MaeI CTAG 4 cut(s) 90, 96, 410, 626
MaeII ACGT 8 cut(s) 359, 424, 442, 523, 533, 612, 646, 693
MalI GATC 5 cut(s) 55, 83, 240, 402, 794
MbiI CCGCTC 1 cut(s) 790
MboI GATC 5 cut(s) 53, 81, 238, 400, 792
MboII GAAGA 4 cut(s) 256, 524, 584, 652
MfeI CAATTG 1 cut(s) 492
MflI RGATCY 3 cut(s) 53, 238, 792
MhlI GDGCHC 2 cut(s) 132, 699
MluCI AATT 4 cut(s) 136, 208, 492, 501
MlyI GAGTC 1 cut(s) 497
MnlI CCTC 2 cut(s) 173, 771
Mph1103I ATGCAT 1 cut(s) 456
MseI TTAA 6 cut(s) 65, 75, 330, 347, 741, 777
MslI CAYNNNNRTG 2 cut(s) 77, 704
MspCI CTTAAG 1 cut(s) 346
MunI CAATTG 1 cut(s) 492
MwoI GCNNNNNNNGC 1 cut(s) 389
NcoI CCATGG 1 cut(s) 123
NdeI CATATG 1 cut(s) 229
NdeII GATC 5 cut(s) 53, 81, 238, 400, 792
NlaIII CATG 3 cut(s) 127, 431, 454
NlaIV GGNNCC 1 cut(s) 55
NsiI ATGCAT 1 cut(s) 456
NspI RCATGY 1 cut(s) 454
OliI CACNNNNGTG 1 cut(s) 704
PceI AGGCCT 1 cut(s) 760
PfeI GAWTC 2 cut(s) 312, 506
PflFI GACNNNGTC 1 cut(s) 752
PflMI CCANNNNNTGG 1 cut(s) 377
PkrI GCNGC 2 cut(s) 270, 464
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
Ppu21I YACGTR 1 cut(s) 647
PshAI GACNNNNGTC 1 cut(s) 423
Psp1406I AACGTT 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 723
PsuI RGATCY 3 cut(s) 53, 238, 792
PsyI GACNNNGTC 1 cut(s) 752
RseI CAYNNNNRTG 2 cut(s) 77, 704
SaqAI TTAA 6 cut(s) 65, 75, 330, 347, 741, 777
SatI GCNGC 2 cut(s) 269, 463
Sau3AI GATC 5 cut(s) 53, 81, 238, 400, 792
Sau96I GGNCC 1 cut(s) 723
SchI GAGTC 1 cut(s) 497
SduI GDGCHC 2 cut(s) 132, 699
SfaNI GCATC 1 cut(s) 463
SinI GGWCC 1 cut(s) 723
SmiMI CAYNNNNRTG 2 cut(s) 77, 704
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
SnaBI TACGTA 1 cut(s) 647
Sse9I AATT 4 cut(s) 136, 208, 492, 501
SseBI AGGCCT 1 cut(s) 760
SsiI CCGC 2 cut(s) 463, 790
SspI AATATT 1 cut(s) 481
SspMI CTAG 4 cut(s) 90, 96, 410, 626
StuI AGGCCT 1 cut(s) 760
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 567
TaiI ACGT 8 cut(s) 362, 427, 445, 526, 536, 615, 649, 696
TaqI TCGA 1 cut(s) 432
TasI AATT 4 cut(s) 136, 208, 492, 501
TauI GCSGC 1 cut(s) 465
TfiI GAWTC 2 cut(s) 312, 506
Tru1I TTAA 6 cut(s) 65, 75, 330, 347, 741, 777
Tru9I TTAA 6 cut(s) 65, 75, 330, 347, 741, 777
TscAI CASTG 1 cut(s) 300
TseI GCWGC 1 cut(s) 268
TspDTI ATGAA 4 cut(s) 304, 315, 585, 653
TspGWI ACGGA 2 cut(s) 11, 46
TspRI CASTG 1 cut(s) 300
Tth111I GACNNNGTC 1 cut(s) 752
Van91I CCANNNNNTGG 1 cut(s) 377
Vha464I CTTAAG 1 cut(s) 346
VneI GTGCAC 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 723
XbaI TCTAGA 1 cut(s) 89
XceI RCATGY 1 cut(s) 454
XspI CTAG 4 cut(s) 90, 96, 410, 626
Zsp2I ATGCAT 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.