Rw2G052320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000442
Physical Location & Seq
Reverse (-)
80293418 .. 80295347
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G052320.1

Sequence Viewer

Length: 738 bp
ATGGGCATTGTTGGTGGATCCCTAGCTTTAAATCACATTAAAGTGATCGGCTATAGAGCTAGACTTCCACAAGATGAGTACAACTCCTCGGTGCATAAGAATTATATTGAGGGCTACAAAGATTTCTTTGACGACTTATTTGGCGGCAGCAGTGAACCATTGGACGACGGGAATTATATAAACATCAAGTCATATGTGAAGGATCTGAAGACAATAGACCAAATGTTATTGCTGCTTCGCCACCCTTATTTTCAATCAGTGGATGAAGCTCTGAGATTCATTCCATCCGCCCTTAAATTACTTGATGGCTTAAGGGATAAAAAGTTTCCACGTCCAAGAACAGGGGCTAGTCAAGCAACCCCCGATCAAGCAACAATAGTGCGTGTCGAAAATCAACGTAGTTGGAAACATGTATACATGACTGTATGCTGCGAAGATAGAGTTAATATTTCAGAGTCAATTGGCAGAATTGAATCTGAAGATTACAGACGTGGATTTACGTCTCTGTATAATGCTGGAAAGAATGGCACACCGTATGAAGACACCGATGTGATAGATGAGCTGAAATTTTATGGAAACGCATGTAAACATCTAGTAAAACATATGAAGGCACGATATCACGACGGGCAAGTTAACTTGGAGTTTGTCAGACCTCTGATCAATGCTGTTTCAATCAATGTCTTAACCTACATTTCTATAATCTCTGTTGAGAAGTTAGAACCATTGAGCACAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

27.93

Weight (kDa)

6.66

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 414
AciI CCGC 2 cut(s) 144, 288
AclWI GGATC 3 cut(s) 12, 25, 210
AcsI RAATTY 1 cut(s) 566
AcuI CTGAAG 2 cut(s) 227, 498
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 341
AflII CTTAAG 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 409
AgsI TTSAA 3 cut(s) 254, 473, 672
AjiI CACGTC 2 cut(s) 332, 491
AleI CACNNNNGTG 1 cut(s) 548
AluBI AGCT 4 cut(s) 26, 59, 269, 562
AluI AGCT 4 cut(s) 26, 59, 269, 562
Alw21I GWGCWC 1 cut(s) 731
Alw26I GTCTC 1 cut(s) 507
AlwI GGATC 3 cut(s) 12, 25, 210
ApeKI GCWGC 3 cut(s) 147, 232, 429
ApoI RAATTY 1 cut(s) 566
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
BamHI GGATCC 1 cut(s) 17
BbsI GAAGAC 2 cut(s) 215, 546
Bbv12I GWGCWC 1 cut(s) 731
BbvI GCAGC 3 cut(s) 159, 219, 416
BccI CCATC 2 cut(s) 292, 299
BclI TGATCA 1 cut(s) 657
BcoDI GTCTC 1 cut(s) 507
BfaI CTAG 4 cut(s) 23, 60, 348, 593
BfmI CTRYAG 1 cut(s) 52
BfrI CTTAAG 1 cut(s) 310
BisI GCNGC 4 cut(s) 145, 148, 233, 430
BlsI GCNGC 4 cut(s) 146, 149, 234, 431
BmgBI CACGTC 2 cut(s) 332, 491
BmiI GGNNCC 1 cut(s) 19
BpiI GAAGAC 2 cut(s) 215, 546
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 341
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 2 cut(s) 268, 284
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMII CTCAG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 76
BseXI GCAGC 3 cut(s) 159, 219, 416
BsiHKAI GWGCWC 1 cut(s) 731
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 1 cut(s) 507
BsmBI CGTCTC 1 cut(s) 507
Bsp1286I GDGCHC 1 cut(s) 731
Bsp143I GATC 5 cut(s) 17, 45, 202, 364, 657
BspACI CCGC 2 cut(s) 144, 288
BspCNI CTCAG 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 3 cut(s) 12, 25, 210
BspTI CTTAAG 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 5 cut(s) 17, 45, 202, 364, 657
BssNAI GTATAC 1 cut(s) 415
Bst1107I GTATAC 1 cut(s) 415
Bst4CI ACNGT 3 cut(s) 424, 534, 733
BstAFI CTTAAG 1 cut(s) 310
BstDEI CTNAG 1 cut(s) 272
BstF5I GGATG 2 cut(s) 268, 284
BstKTI GATC 5 cut(s) 20, 48, 205, 367, 660
BstMAI GTCTC 1 cut(s) 507
BstMBI GATC 5 cut(s) 17, 45, 202, 364, 657
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstNSI RCATGY 2 cut(s) 413, 585
BstSFI CTRYAG 1 cut(s) 52
BstV1I GCAGC 3 cut(s) 159, 219, 416
BstV2I GAAGAC 2 cut(s) 215, 546
BstX2I RGATCY 2 cut(s) 17, 202
BstYI RGATCY 2 cut(s) 17, 202
BstZ17I GTATAC 1 cut(s) 415
BtrI CACGTC 2 cut(s) 332, 491
BtsCI GGATG 2 cut(s) 268, 284
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 2 cut(s) 157, 264
Csp6I GTAC 1 cut(s) 79
CviAII CATG 3 cut(s) 410, 418, 582
CviJI RGCY 8 cut(s) 26, 51, 59, 114, 269, 309, 347, 562
CviKI_1 RGCY 8 cut(s) 26, 51, 59, 114, 269, 309, 347, 562
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 272
DpnI GATC 5 cut(s) 19, 47, 204, 366, 659
DpnII GATC 5 cut(s) 17, 45, 202, 364, 657
DraI TTTAAA 1 cut(s) 30
EciI GGCGGA 1 cut(s) 277
Eco32I GATATC 1 cut(s) 617
Eco57I CTGAAG 2 cut(s) 227, 498
EcoRV GATATC 1 cut(s) 617
Esp3I CGTCTC 1 cut(s) 507
FaeI CATG 3 cut(s) 413, 421, 585
FatI CATG 3 cut(s) 409, 417, 581
FauNDI CATATG 2 cut(s) 193, 603
FbaI TGATCA 1 cut(s) 657
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 4 cut(s) 145, 148, 233, 430
FokI GGATG 2 cut(s) 271, 275
Fsp4HI GCNGC 4 cut(s) 145, 148, 233, 430
FspBI CTAG 4 cut(s) 23, 60, 348, 593
GluI GCNGC 4 cut(s) 145, 148, 233, 430
Hin1II CATG 3 cut(s) 413, 421, 585
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HinfI GANTC 3 cut(s) 276, 455, 473
HpaI GTTAAC 1 cut(s) 634
Hpy166II GTNNAC 4 cut(s) 155, 415, 587, 634
Hpy188I TCNGA 6 cut(s) 207, 273, 454, 478, 650, 657
Hpy188III TCNNGA 1 cut(s) 620
Hpy8I GTNNAC 4 cut(s) 155, 415, 587, 634
Hpy99I CGWCG 2 cut(s) 170, 626
HpyAV CCTTC 2 cut(s) 193, 601
HpyCH4III ACNGT 3 cut(s) 424, 534, 733
HpyCH4IV ACGT 4 cut(s) 331, 397, 490, 500
HpyCH4V TGCA 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 4 cut(s) 331, 397, 490, 500
Hsp92II CATG 3 cut(s) 413, 421, 585
Ksp22I TGATCA 1 cut(s) 657
KspAI GTTAAC 1 cut(s) 634
Kzo9I GATC 5 cut(s) 17, 45, 202, 364, 657
LpnPI CCDG 2 cut(s) 327, 501
Lsp1109I GCAGC 3 cut(s) 159, 219, 416
MaeI CTAG 4 cut(s) 23, 60, 348, 593
MaeII ACGT 4 cut(s) 331, 397, 490, 500
MalI GATC 5 cut(s) 19, 47, 204, 366, 659
MboI GATC 5 cut(s) 17, 45, 202, 364, 657
MboII GAAGA 4 cut(s) 220, 446, 491, 551
MfeI CAATTG 1 cut(s) 459
MflI RGATCY 2 cut(s) 17, 202
MhlI GDGCHC 1 cut(s) 731
MluCI AATT 6 cut(s) 100, 172, 296, 459, 468, 566
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 3 cut(s) 97, 103, 663
MseI TTAA 7 cut(s) 29, 39, 294, 311, 444, 633, 683
MslI CAYNNNNRTG 2 cut(s) 41, 548
MspCI CTTAAG 1 cut(s) 310
MunI CAATTG 1 cut(s) 459
MwoI GCNNNNNNNGC 1 cut(s) 353
NdeI CATATG 2 cut(s) 193, 603
NdeII GATC 5 cut(s) 17, 45, 202, 364, 657
NlaIII CATG 3 cut(s) 413, 421, 585
NlaIV GGNNCC 1 cut(s) 19
NspI RCATGY 2 cut(s) 413, 585
OliI CACNNNNGTG 1 cut(s) 548
PciI ACATGT 1 cut(s) 409
PfeI GAWTC 2 cut(s) 276, 473
PkrI GCNGC 4 cut(s) 146, 149, 234, 431
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
PscI ACATGT 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 19
PsuI RGATCY 2 cut(s) 17, 202
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 2 cut(s) 41, 548
SaqAI TTAA 7 cut(s) 29, 39, 294, 311, 444, 633, 683
SatI GCNGC 4 cut(s) 145, 148, 233, 430
Sau3AI GATC 5 cut(s) 17, 45, 202, 364, 657
SchI GAGTC 1 cut(s) 464
SduI GDGCHC 1 cut(s) 731
SfcI CTRYAG 1 cut(s) 52
SmiMI CAYNNNNRTG 2 cut(s) 41, 548
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
Sse9I AATT 6 cut(s) 100, 172, 296, 459, 468, 566
SsiI CCGC 2 cut(s) 144, 288
SspI AATATT 1 cut(s) 448
SspMI CTAG 4 cut(s) 23, 60, 348, 593
TaaI ACNGT 3 cut(s) 424, 534, 733
TaiI ACGT 4 cut(s) 334, 400, 493, 503
TaqI TCGA 1 cut(s) 387
TasI AATT 6 cut(s) 100, 172, 296, 459, 468, 566
TatI WGTACW 1 cut(s) 78
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 2 cut(s) 276, 473
Tru1I TTAA 7 cut(s) 29, 39, 294, 311, 444, 633, 683
Tru9I TTAA 7 cut(s) 29, 39, 294, 311, 444, 633, 683
TscAI CASTG 2 cut(s) 157, 264
TseI GCWGC 3 cut(s) 147, 232, 429
TspDTI ATGAA 4 cut(s) 268, 279, 552, 620
TspRI CASTG 2 cut(s) 157, 264
Vha464I CTTAAG 1 cut(s) 310
XapI RAATTY 1 cut(s) 566
XceI RCATGY 2 cut(s) 413, 585
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 4 cut(s) 23, 60, 348, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.