Rh4AG433400

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000442
Physical Location & Seq
Reverse (-)
72757920 .. 72760439
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG433400.1

Sequence Viewer

Length: 273 bp
ATGATAGAGCTTTTGGAGTATTGCATGAAGGAACTCCGGGGAGAAACTAAGCAAATACAAAGGAAAATACAGAGAATAGAAAGAGAGCCGGAGCTAAATATGAGCAACAAGGCAAACCCAGTGCTGGAAGCACATCCAATGAACGGTGGAGATGGCACATACAGCTACACCAAAAACTCCTATTACCAAATTCAAGCTGTTCTTAATCACTCGTCACGCATATTTGATATGACATTTCAATTCCACTTCTTCTATGTTCACCATATACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

90

Amino Acids

10.81

Weight (kDa)

7.92

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 189
AfiI CCNNNNNNNGG 2 cut(s) 124, 143
AgsI TTSAA 2 cut(s) 194, 239
AluBI AGCT 4 cut(s) 10, 94, 165, 197
AluI AGCT 4 cut(s) 10, 94, 165, 197
ApoI RAATTY 1 cut(s) 189
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 251
BccI CCATC 1 cut(s) 146
BcnI CCSGG 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 38
BmrI ACTGGG 1 cut(s) 113
BmuI ACTGGG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 143
Bse1I ACTGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 124, 143
BseNI ACTGG 1 cut(s) 119
BsiSI CCGG 2 cut(s) 37, 89
BslI CCNNNNNNNGG 2 cut(s) 124, 143
BsrI ACTGG 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 126
CviAII CATG 1 cut(s) 25
CviJI RGCY 5 cut(s) 10, 88, 94, 165, 197
CviKI_1 RGCY 5 cut(s) 10, 88, 94, 165, 197
DdeI CTNAG 1 cut(s) 48
FaeI CATG 1 cut(s) 28
FaiI YATR 8 cut(s) 26, 101, 160, 221, 230, 255, 264, 266
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FatI CATG 1 cut(s) 24
FokI GGATG 1 cut(s) 120
HapII CCGG 2 cut(s) 37, 89
Hin1II CATG 1 cut(s) 28
HpaII CCGG 2 cut(s) 37, 89
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 259
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 1 cut(s) 28
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 4 cut(s) 50, 102, 110, 132
MaeIII GTNAC 1 cut(s) 213
MboII GAAGA 1 cut(s) 241
MluCI AATT 2 cut(s) 189, 239
MseI TTAA 1 cut(s) 204
MspI CCGG 2 cut(s) 37, 89
MspR9I CCNGG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 162
NciI CCSGG 1 cut(s) 38
NlaIII CATG 1 cut(s) 28
NmuCI GTSAC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 204
ScrFI CCNGG 1 cut(s) 38
SetI ASST 4 cut(s) 12, 96, 167, 199
Sse9I AATT 2 cut(s) 189, 239
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 146
TasI AATT 2 cut(s) 189, 239
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 2 cut(s) 41, 155
TspRI CASTG 1 cut(s) 126
XapI RAATTY 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.