Rh2BG643800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000442
Physical Location & Seq
Reverse (-)
86251765 .. 86252377
613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG643800.1

Sequence Viewer

Length: 510 bp
ATGTTTTTCGTCATTCCTGAAAATCCAAACTACAAAGCCAAGCATTCAGGCGAAAATAGAAAGCACCACTTCCAGAAACTCATCAGTGGCCATCAGGTTGATCCAGCTCAAGCATCTACAGAGGCAAATTTAATGAAATGGGAGACAGCTTACCATAAGATGGTGAAGGAGACAAGGAAAGTGAACATTCAGAAATCCATTTCAGAACTTGCCCCTGAGTTTCATGAAATATACAATGATGGAATATTGCGCAAAGGAAGTAGGCCTCAAAGATACCAGGATAAGAATGCTGCTGATGAGTTGCACTACTTTTGCAATACCATGAAGCACATTCATGCAAAGTTTTCCCAGGAAACTTATGATAAAGCTAGACATAACCCTGAAGCTATACTTGCCTCGTTGCATAGTATGTCTCCAACAATTCCCATGGACATTTTTCAATTTTTCTGGAGTTATGATGGACATGCTTTAAGAACCATTTCTCTTGACTTTGTCAAGACTATTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.82

Weight (kDa)

9.1

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 160
AclWI GGATC 1 cut(s) 95
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 402
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 1 cut(s) 440
AjnI CCWGG 2 cut(s) 276, 348
AluBI AGCT 4 cut(s) 107, 149, 368, 386
AluI AGCT 4 cut(s) 107, 149, 368, 386
Alw26I GTCTC 3 cut(s) 137, 164, 417
AlwI GGATC 1 cut(s) 95
AoxI GGCC 2 cut(s) 88, 263
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 127
Asp700I GAANNNNTTC 1 cut(s) 478
AspLEI GCGC 1 cut(s) 252
AsuHPI GGTGA 1 cut(s) 175
BalI TGGCCA 1 cut(s) 90
BbvI GCAGC 1 cut(s) 277
BccI CCATC 4 cut(s) 99, 154, 233, 452
BciT130I CCWGG 2 cut(s) 278, 350
BcoDI GTCTC 3 cut(s) 137, 164, 417
BfaI CTAG 1 cut(s) 369
BfmI CTRYAG 1 cut(s) 117
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 2 cut(s) 278, 350
BmrFI CCNGG 2 cut(s) 278, 350
BmsI GCATC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 469
BpuEI CTTGAG 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 348, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 160
BseBI CCWGG 2 cut(s) 278, 350
BseDI CCNNGG 2 cut(s) 348, 426
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 277
BshFI GGCC 2 cut(s) 90, 265
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 3 cut(s) 137, 164, 417
BsmI GAATGC 2 cut(s) 43, 292
BsnI GGCC 2 cut(s) 90, 265
Bsp143I GATC 1 cut(s) 100
Bsp19I CCATGG 1 cut(s) 426
BspANI GGCC 2 cut(s) 90, 265
BspCNI CTCAG 1 cut(s) 208
BspHI TCATGA 1 cut(s) 223
BspPI GGATC 1 cut(s) 95
BssECI CCNNGG 2 cut(s) 348, 426
BssMI GATC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 2 cut(s) 278, 350
BstDEI CTNAG 1 cut(s) 216
BstDSI CCRYGG 1 cut(s) 426
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 3 cut(s) 137, 164, 417
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstNI CCWGG 2 cut(s) 278, 350
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 2 cut(s) 276, 348
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 277
BsuRI GGCC 2 cut(s) 90, 265
BtgI CCRYGG 1 cut(s) 426
BtsIMutI CAGTG 1 cut(s) 91
CciI TCATGA 1 cut(s) 223
CfoI GCGC 1 cut(s) 252
CviAII CATG 5 cut(s) 224, 322, 335, 427, 464
CviJI RGCY 7 cut(s) 38, 90, 107, 149, 265, 368, 386
CviKI_1 RGCY 7 cut(s) 38, 90, 107, 149, 265, 368, 386
DdeI CTNAG 1 cut(s) 216
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 426
Eco147I AGGCCT 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 402
EcoRII CCWGG 2 cut(s) 276, 348
EcoT14I CCWWGG 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 5 cut(s) 227, 325, 338, 430, 467
FalI AAGNNNNNCTT 4 cut(s) 53, 85, 375, 407
FatI CATG 5 cut(s) 223, 321, 334, 426, 463
Fnu4HI GCNGC 1 cut(s) 291
Fsp4HI GCNGC 1 cut(s) 291
FspBI CTAG 1 cut(s) 369
FspI TGCGCA 1 cut(s) 251
GlaI GCGC 1 cut(s) 251
GluI GCNGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 469
HaeIII GGCC 2 cut(s) 90, 265
HhaI GCGC 1 cut(s) 252
Hin1II CATG 5 cut(s) 227, 325, 338, 430, 467
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 192, 205
Hpy188III TCNNGA 6 cut(s) 17, 73, 224, 448, 485, 496
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 160
HpyCH4V TGCA 4 cut(s) 304, 315, 338, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 5 cut(s) 227, 325, 338, 430, 467
HspAI GCGC 1 cut(s) 250
Kzo9I GATC 1 cut(s) 100
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 1 cut(s) 122
MaeI CTAG 1 cut(s) 369
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 3 cut(s) 127, 420, 440
MluNI TGGCCA 1 cut(s) 90
MmeI TCCRAC 1 cut(s) 440
MnlI CCTC 3 cut(s) 115, 276, 406
Mox20I TGGCCA 1 cut(s) 90
MroXI GAANNNNTTC 1 cut(s) 478
MscI TGGCCA 1 cut(s) 90
MseI TTAA 2 cut(s) 131, 470
MslI CAYNNNNRTG 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 90
MspR9I CCNGG 2 cut(s) 278, 350
Mva1269I GAATGC 2 cut(s) 43, 292
MvaI CCWGG 2 cut(s) 278, 350
MwoI GCNNNNNNNGC 1 cut(s) 392
NcoI CCATGG 1 cut(s) 426
NdeII GATC 1 cut(s) 100
NlaIII CATG 5 cut(s) 227, 325, 338, 430, 467
NsbI TGCGCA 1 cut(s) 251
NspI RCATGY 1 cut(s) 467
PagI TCATGA 1 cut(s) 223
PceI AGGCCT 1 cut(s) 265
PctI GAATGC 2 cut(s) 43, 292
PdmI GAANNNNTTC 1 cut(s) 478
PflFI GACNNNGTC 1 cut(s) 491
PflMI CCANNNNNTGG 1 cut(s) 160
PkrI GCNGC 1 cut(s) 292
Psp6I CCWGG 2 cut(s) 276, 348
PspGI CCWGG 2 cut(s) 276, 348
PsyI GACNNNGTC 1 cut(s) 491
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 2 cut(s) 131, 470
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 1 cut(s) 100
ScrFI CCNGG 2 cut(s) 278, 350
SetI ASST 6 cut(s) 99, 109, 151, 370, 388, 509
SfaNI GCATC 1 cut(s) 122
SfcI CTRYAG 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
Sse9I AATT 3 cut(s) 127, 420, 440
SseBI AGGCCT 1 cut(s) 265
SspI AATATT 1 cut(s) 246
SspMI CTAG 1 cut(s) 369
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 2 cut(s) 276, 348
StyI CCWWGG 1 cut(s) 426
TasI AATT 3 cut(s) 127, 420, 440
Tru1I TTAA 2 cut(s) 131, 470
Tru9I TTAA 2 cut(s) 131, 470
TscAI CASTG 1 cut(s) 91
TseI GCWGC 1 cut(s) 290
TspDTI ATGAA 5 cut(s) 149, 212, 240, 323, 338
TspRI CASTG 1 cut(s) 91
Tth111I GACNNNGTC 1 cut(s) 491
Van91I CCANNNNNTGG 1 cut(s) 160
XapI RAATTY 1 cut(s) 127
XceI RCATGY 1 cut(s) 467
XmnI GAANNNNTTC 1 cut(s) 478
XspI CTAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.