Rh2DG652800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000442
Physical Location & Seq
Forward (+)
87806599 .. 87806922
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG652800.1

Sequence Viewer

Length: 324 bp
ATGGGGTTTCTAGGTGGCATTTTGAGGAAATTGGGCAGCCGCTCCATTGTCAGTAACATGGGGCCAAAGTTGAATTTGGGCACAAAGATGCATTGCTCATTTGGGACTCTGACCAGAAAAAACATTTTTCTGGAAGATATTAAGCAAGAGGGCACATTGGAGCAAAAGAAAGCTTGCTTGAAAGGGCTCCTTCATGAAATGGTATGGAGAATGAGGAGGGGCATTCAAGGAGGATGCACAGATCCGGAACAGATTCCAGATTCCCGTAATTTATCACAGAGCTTACTTGTCAGACGAGACATATGTAGTAGGGAAATACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.04

Weight (kDa)

9.87

Isoelectric Point (pI)

67.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 42
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 1 cut(s) 40
AclWI GGATC 1 cut(s) 236
AcsI RAATTY 1 cut(s) 73
AgsI TTSAA 3 cut(s) 73, 181, 227
AluBI AGCT 2 cut(s) 173, 282
AluI AGCT 2 cut(s) 173, 282
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 36
ApoI RAATTY 1 cut(s) 73
Asp700I GAANNNNTTC 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 62
BaeGI GKGCMC 2 cut(s) 83, 155
BanII GRGCYC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 2 cut(s) 11, 322
BisI GCNGC 2 cut(s) 37, 40
BlsI GCNGC 2 cut(s) 38, 41
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 2 cut(s) 63, 188
BmsI GCATC 2 cut(s) 78, 224
BsaWI WCCGGW 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 91
BseAI TCCGGA 1 cut(s) 244
BseGI GGATG 1 cut(s) 239
BseMI GCAATG 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 229
BseSI GKGCMC 2 cut(s) 83, 155
BseXI GCAGC 1 cut(s) 48
BshFI GGCC 1 cut(s) 64
BsiSI CCGG 1 cut(s) 245
BslFI GGGAC 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 291
BsmFI GGGAC 1 cut(s) 118
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 1 cut(s) 64
Bsp1286I GDGCHC 3 cut(s) 83, 155, 189
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 1 cut(s) 40
BspANI GGCC 1 cut(s) 64
BspEI TCCGGA 1 cut(s) 244
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 63, 188
BspPI GGATC 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 91
BssMI GATC 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 175
BstF5I GGATG 1 cut(s) 239
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 1 cut(s) 241
BstSLI GKGCMC 2 cut(s) 83, 155
BstV1I GCAGC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 239
Cac8I GCNNGC 1 cut(s) 175
CciI TCATGA 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 62
CviAII CATG 2 cut(s) 58, 194
CviJI RGCY 5 cut(s) 39, 64, 173, 187, 282
CviKI_1 RGCY 5 cut(s) 39, 64, 173, 187, 282
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 189
EcoT22I ATGCAT 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 189
FaeI CATG 2 cut(s) 61, 197
FaiI YATR 5 cut(s) 59, 195, 205, 302, 304
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 1 cut(s) 118
FatI CATG 2 cut(s) 57, 193
FauNDI CATATG 1 cut(s) 302
Fnu4HI GCNGC 2 cut(s) 37, 40
FokI GGATG 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 2 cut(s) 37, 40
FspBI CTAG 2 cut(s) 11, 322
GluI GCNGC 2 cut(s) 37, 40
HaeIII GGCC 1 cut(s) 64
HapII CCGG 1 cut(s) 245
Hin1II CATG 2 cut(s) 61, 197
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 3 cut(s) 106, 253, 260
HpaII CCGG 1 cut(s) 245
Hpy188I TCNGA 2 cut(s) 111, 293
Hpy188III TCNNGA 4 cut(s) 131, 194, 245, 257
HpyAV CCTTC 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 91, 237
Hsp92II CATG 2 cut(s) 61, 197
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 1 cut(s) 241
LmnI GCTCC 3 cut(s) 47, 160, 192
LpnPI CCDG 4 cut(s) 116, 127, 258, 270
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 2 cut(s) 78, 224
MaeI CTAG 2 cut(s) 11, 322
MaeIII GTNAC 1 cut(s) 53
MalI GATC 1 cut(s) 243
MbiI CCGCTC 1 cut(s) 42
MboI GATC 1 cut(s) 241
MboII GAAGA 1 cut(s) 146
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 3 cut(s) 83, 155, 189
MluCI AATT 3 cut(s) 29, 73, 268
MlyI GAGTC 1 cut(s) 100
MnlI CCTC 5 cut(s) 18, 142, 207, 210, 224
Mph1103I ATGCAT 1 cut(s) 93
MroI TCCGGA 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 86
MspI CCGG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 222
NdeI CATATG 1 cut(s) 302
NdeII GATC 1 cut(s) 241
NlaIII CATG 2 cut(s) 61, 197
NlaIV GGNNCC 2 cut(s) 63, 188
NsiI ATGCAT 1 cut(s) 93
PagI TCATGA 1 cut(s) 193
PctI GAATGC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 2 cut(s) 253, 260
PkrI GCNGC 2 cut(s) 38, 41
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 63, 188
PspPI GGNCC 1 cut(s) 62
PsuI RGATCY 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 86
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 2 cut(s) 37, 40
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 1 cut(s) 100
SduI GDGCHC 3 cut(s) 83, 155, 189
SetI ASST 3 cut(s) 16, 175, 284
SfaNI GCATC 2 cut(s) 78, 224
SmiMI CAYNNNNRTG 1 cut(s) 86
Sse9I AATT 3 cut(s) 29, 73, 268
SsiI CCGC 1 cut(s) 40
SspMI CTAG 2 cut(s) 11, 322
TasI AATT 3 cut(s) 29, 73, 268
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 2 cut(s) 253, 260
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseI GCWGC 1 cut(s) 36
TspDTI ATGAA 2 cut(s) 182, 210
XapI RAATTY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 2 cut(s) 11, 322
Zsp2I ATGCAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.