Rh3DG210900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000442
Physical Location & Seq
Reverse (-)
19478369 .. 19478731
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG210900.1

Sequence Viewer

Length: 363 bp
ATGGGTAGTGATGTAGATCTAACGAACTGTGTTGGAAGTTGGCATGAGCAGAGCGGTGGGCTGATTCCCATCTCTGTTGGCCGTGATGATTGCGGCGAATTCTGTTTTGATGGCGGCAATTTGGTTTGGGTTACCGACGGAGTGGTGCGATGCCCAGATGGCTTTGATGGATCGCGATCGGCTTTAGGTCGGGGATGTGACTGGATTTGGTTTTGTGGAGATGTACAGGATCCTGATCTTGGTGGCGGCGCTGGGGTCGCGATTTTGGGATGGTCGGAGATGGCAGAGTCTATCCATTGTCATGGTTTGGAGGGAAAGCTTCTCTCTCCACGATCCAGCTGGATGGCGTGCGTCGGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.61

Weight (kDa)

4.23

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 54
AccII CGCG 2 cut(s) 175, 260
AciI CCGC 4 cut(s) 54, 93, 114, 246
AclWI GGATC 4 cut(s) 178, 224, 237, 327
AcoI YGGCCR 1 cut(s) 79
AcsI RAATTY 1 cut(s) 98
AfaI GTAC 1 cut(s) 225
AfiI CCNNNNNNNGG 1 cut(s) 239
AluBI AGCT 2 cut(s) 319, 339
AluI AGCT 2 cut(s) 319, 339
AlwI GGATC 4 cut(s) 178, 224, 237, 327
AoxI GGCC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 98
AspLEI GCGC 1 cut(s) 251
BamHI GGATCC 1 cut(s) 229
BccI CCATC 7 cut(s) 77, 104, 152, 161, 264, 274, 337
BceAI ACGGC 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 252
BglI GCCNNNNNGGC 1 cut(s) 159
BglII AGATCT 1 cut(s) 16
BisI GCNGC 3 cut(s) 94, 115, 247
BlsI GCNGC 3 cut(s) 95, 116, 248
BmiI GGNNCC 1 cut(s) 231
BmsI GCATC 1 cut(s) 140
BsaBI GATNNNNATC 4 cut(s) 15, 68, 175, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 206
Bse8I GATNNNNATC 4 cut(s) 15, 68, 175, 234
BseGI GGATG 3 cut(s) 200, 275, 348
BseJI GATNNNNATC 4 cut(s) 15, 68, 175, 234
BseLI CCNNNNNNNGG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 206
BseYI CCCAGC 1 cut(s) 251
Bsh1236I CGCG 2 cut(s) 175, 260
Bsh1285I CGRYCG 1 cut(s) 179
BshFI GGCC 1 cut(s) 81
BsiEI CGRYCG 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 239
BsnI GGCC 1 cut(s) 81
Bsp1407I TGTACA 1 cut(s) 223
Bsp143I GATC 6 cut(s) 16, 170, 176, 229, 235, 332
Bsp68I TCGCGA 2 cut(s) 175, 260
BspACI CCGC 4 cut(s) 54, 93, 114, 246
BspANI GGCC 1 cut(s) 81
BspFNI CGCG 2 cut(s) 175, 260
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 4 cut(s) 178, 224, 237, 327
BsrBI CCGCTC 1 cut(s) 54
BsrGI TGTACA 1 cut(s) 223
BsrI ACTGG 1 cut(s) 206
BssMI GATC 6 cut(s) 16, 170, 176, 229, 235, 332
Bst4CI ACNGT 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 349
BstEII GGTNACC 1 cut(s) 130
BstF5I GGATG 3 cut(s) 200, 275, 348
BstFNI CGCG 2 cut(s) 175, 260
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 6 cut(s) 19, 173, 179, 232, 238, 335
BstMBI GATC 6 cut(s) 16, 170, 176, 229, 235, 332
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 2 cut(s) 159, 257
BstPI GGTNACC 1 cut(s) 130
BstUI CGCG 2 cut(s) 175, 260
BstX2I RGATCY 2 cut(s) 16, 229
BstXI CCANNNNNNTGG 2 cut(s) 302, 343
BstYI RGATCY 2 cut(s) 16, 229
BsuRI GGCC 1 cut(s) 81
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 3 cut(s) 200, 275, 348
BtuMI TCGCGA 2 cut(s) 175, 260
Cac8I GCNNGC 1 cut(s) 349
CfoI GCGC 1 cut(s) 251
CseI GACGC 1 cut(s) 340
Csp6I GTAC 1 cut(s) 224
CviAII CATG 2 cut(s) 44, 302
CviJI RGCY 6 cut(s) 61, 81, 162, 182, 319, 339
CviKI_1 RGCY 6 cut(s) 61, 81, 162, 182, 319, 339
CviQI GTAC 1 cut(s) 224
DpnI GATC 6 cut(s) 18, 172, 178, 231, 237, 334
DpnII GATC 6 cut(s) 16, 170, 176, 229, 235, 332
EaeI YGGCCR 1 cut(s) 79
Eco91I GGTNACC 1 cut(s) 130
EcoO65I GGTNACC 1 cut(s) 130
EcoRI GAATTC 1 cut(s) 98
FaeI CATG 2 cut(s) 47, 305
FaiI YATR 2 cut(s) 45, 303
FatI CATG 2 cut(s) 43, 301
Fnu4HI GCNGC 3 cut(s) 94, 115, 247
FokI GGATG 3 cut(s) 207, 282, 355
Fsp4HI GCNGC 3 cut(s) 94, 115, 247
GlaI GCGC 1 cut(s) 250
GluI GCNGC 3 cut(s) 94, 115, 247
GsaI CCCAGC 1 cut(s) 255
HaeII RGCGCY 1 cut(s) 252
HaeIII GGCC 1 cut(s) 81
HgaI GACGC 1 cut(s) 340
HhaI GCGC 1 cut(s) 251
Hin1II CATG 2 cut(s) 47, 305
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 2 cut(s) 64, 287
Hpy188I TCNGA 2 cut(s) 277, 362
Hpy188III TCNNGA 3 cut(s) 174, 233, 259
Hpy99I CGWCG 2 cut(s) 140, 356
HpyCH4III ACNGT 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 257
Hsp92II CATG 2 cut(s) 47, 305
HspAI GCGC 1 cut(s) 249
Kzo9I GATC 6 cut(s) 16, 170, 176, 229, 235, 332
LpnPI CCDG 7 cut(s) 168, 187, 212, 237, 246, 325, 349
LweI GCATC 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 130, 197
MalI GATC 6 cut(s) 18, 172, 178, 231, 237, 334
MbiI CCGCTC 1 cut(s) 54
MboI GATC 6 cut(s) 16, 170, 176, 229, 235, 332
MflI RGATCY 2 cut(s) 16, 229
MluCI AATT 2 cut(s) 98, 118
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 2 cut(s) 13, 255
MnlI CCTC 1 cut(s) 304
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 339
MvnI CGCG 2 cut(s) 175, 260
MwoI GCNNNNNNNGC 2 cut(s) 159, 257
NdeII GATC 6 cut(s) 16, 170, 176, 229, 235, 332
NlaIII CATG 2 cut(s) 47, 305
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 197
NruI TCGCGA 2 cut(s) 175, 260
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 3 cut(s) 95, 116, 248
Ple19I CGATCG 1 cut(s) 179
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PspEI GGTNACC 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 231
PsuI RGATCY 2 cut(s) 16, 229
PvuI CGATCG 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 339
RruI TCGCGA 2 cut(s) 175, 260
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 300
SatI GCNGC 3 cut(s) 94, 115, 247
Sau3AI GATC 6 cut(s) 16, 170, 176, 229, 235, 332
SchI GAGTC 1 cut(s) 296
SetI ASST 3 cut(s) 190, 321, 341
SfaNI GCATC 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 2 cut(s) 98, 118
SsiI CCGC 4 cut(s) 54, 93, 114, 246
TaaI ACNGT 1 cut(s) 29
TasI AATT 2 cut(s) 98, 118
TatI WGTACW 1 cut(s) 223
TauI GCSGC 3 cut(s) 96, 117, 249
TfiI GAWTC 1 cut(s) 64
TseFI GTSAC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 197
TspGWI ACGGA 1 cut(s) 153
XapI RAATTY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.