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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 738 |
| AccB1I | GGYRCC | 1 cut(s) | 77 |
| AciI | CCGC | 2 cut(s) | 71, 84 |
| AclWI | GGATC | 1 cut(s) | 854 |
| AcoI | YGGCCR | 3 cut(s) | 72, 525, 529 |
| AcsI | RAATTY | 1 cut(s) | 968 |
| AcyI | GRCGYC | 1 cut(s) | 78 |
| AdeI | CACNNNGTG | 1 cut(s) | 20 |
| AfaI | GTAC | 2 cut(s) | 519, 815 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 74, 154, 727, 1030 |
| AflIII | ACRYGT | 1 cut(s) | 936 |
| AgsI | TTSAA | 7 cut(s) | 253, 299, 450, 470, 478, 835, 967 |
| AjnI | CCWGG | 1 cut(s) | 201 |
| AluBI | AGCT | 5 cut(s) | 245, 259, 347, 390, 828 |
| AluI | AGCT | 5 cut(s) | 245, 259, 347, 390, 828 |
| Alw21I | GWGCWC | 3 cut(s) | 117, 165, 261 |
| Alw26I | GTCTC | 1 cut(s) | 356 |
| AlwI | GGATC | 1 cut(s) | 854 |
| AoxI | GGCC | 4 cut(s) | 26, 72, 525, 529 |
| ApeKI | GCWGC | 2 cut(s) | 578, 1027 |
| ApoI | RAATTY | 1 cut(s) | 968 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 324 |
| AspLEI | GCGC | 1 cut(s) | 80 |
| AspS9I | GGNCC | 1 cut(s) | 27 |
| AsuHPI | GGTGA | 1 cut(s) | 161 |
| AsuNHI | GCTAGC | 1 cut(s) | 10 |
| BanI | GGYRCC | 1 cut(s) | 77 |
| BanII | GRGCYC | 1 cut(s) | 261 |
| BauI | CACGAG | 1 cut(s) | 487 |
| Bbv12I | GWGCWC | 3 cut(s) | 117, 165, 261 |
| BbvI | GCAGC | 2 cut(s) | 590, 1039 |
| BccI | CCATC | 2 cut(s) | 540, 678 |
| BciT130I | CCWGG | 1 cut(s) | 203 |
| BciVI | GTATCC | 1 cut(s) | 839 |
| BclI | TGATCA | 2 cut(s) | 436, 894 |
| BcoDI | GTCTC | 1 cut(s) | 356 |
| BfaI | CTAG | 2 cut(s) | 11, 387 |
| BfoI | RGCGCY | 1 cut(s) | 81 |
| BfuI | GTATCC | 1 cut(s) | 839 |
| BglII | AGATCT | 2 cut(s) | 409, 1100 |
| BisI | GCNGC | 4 cut(s) | 72, 85, 579, 1028 |
| BlsI | GCNGC | 4 cut(s) | 73, 86, 580, 1029 |
| Bme1390I | CCNGG | 1 cut(s) | 203 |
| BmgT120I | GGNCC | 1 cut(s) | 27 |
| BmiI | GGNNCC | 1 cut(s) | 79 |
| BmrFI | CCNGG | 1 cut(s) | 203 |
| BmsI | GCATC | 4 cut(s) | 296, 520, 721, 1029 |
| BmtI | GCTAGC | 1 cut(s) | 14 |
| BpmI | CTGGAG | 1 cut(s) | 251 |
| BsaBI | GATNNNNATC | 1 cut(s) | 858 |
| BsaHI | GRCGYC | 1 cut(s) | 78 |
| BsaJI | CCNNGG | 1 cut(s) | 954 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 74, 154, 727, 1030 |
| Bse118I | RCCGGY | 4 cut(s) | 67, 74, 80, 527 |
| Bse1I | ACTGG | 3 cut(s) | 234, 721, 917 |
| Bse3DI | GCAATG | 2 cut(s) | 768, 895 |
| Bse8I | GATNNNNATC | 1 cut(s) | 858 |
| BseBI | CCWGG | 1 cut(s) | 203 |
| BseDI | CCNNGG | 1 cut(s) | 954 |
| BseGI | GGATG | 6 cut(s) | 288, 311, 532, 736, 1020, 1081 |
| BseJI | GATNNNNATC | 1 cut(s) | 858 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 74, 154, 727, 1030 |
| BseMI | GCAATG | 2 cut(s) | 768, 895 |
| BseNI | ACTGG | 3 cut(s) | 234, 721, 917 |
| BseRI | GAGGAG | 5 cut(s) | 137, 301, 1049, 1058, 1061 |
| BseX3I | CGGCCG | 1 cut(s) | 72 |
| BseXI | GCAGC | 2 cut(s) | 590, 1039 |
| Bsh1285I | CGRYCG | 2 cut(s) | 75, 856 |
| BshFI | GGCC | 4 cut(s) | 28, 74, 527, 531 |
| BshNI | GGYRCC | 1 cut(s) | 77 |
| BsiEI | CGRYCG | 2 cut(s) | 75, 856 |
| BsiHKAI | GWGCWC | 3 cut(s) | 117, 165, 261 |
| BsiSI | CCGG | 5 cut(s) | 68, 75, 81, 528, 640 |
| BslFI | GGGAC | 2 cut(s) | 238, 467 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 74, 154, 727, 1030 |
| BsmAI | GTCTC | 1 cut(s) | 356 |
| BsmFI | GGGAC | 2 cut(s) | 238, 467 |
| BsmI | GAATGC | 1 cut(s) | 294 |
| BsnI | GGCC | 4 cut(s) | 28, 74, 527, 531 |
| Bsp1286I | GDGCHC | 3 cut(s) | 117, 165, 261 |
| Bsp1407I | TGTACA | 1 cut(s) | 813 |
| Bsp143I | GATC | 8 cut(s) | 103, 151, 409, 436, 853, 859, 894, 1100 |
| BspACI | CCGC | 2 cut(s) | 71, 84 |
| BspANI | GGCC | 4 cut(s) | 28, 74, 527, 531 |
| BspHI | TCATGA | 3 cut(s) | 265, 427, 805 |
| BspLI | GGNNCC | 1 cut(s) | 79 |
| BspOI | GCTAGC | 1 cut(s) | 14 |
| BspPI | GGATC | 1 cut(s) | 854 |
| BspQI | GCTCTTC | 1 cut(s) | 1047 |
| BspT107I | GGYRCC | 1 cut(s) | 77 |
| BsrDI | GCAATG | 2 cut(s) | 768, 895 |
| BsrFI | RCCGGY | 4 cut(s) | 67, 74, 80, 527 |
| BsrGI | TGTACA | 1 cut(s) | 813 |
| BsrI | ACTGG | 3 cut(s) | 234, 721, 917 |
| BssAI | RCCGGY | 4 cut(s) | 67, 74, 80, 527 |
| BssECI | CCNNGG | 1 cut(s) | 954 |
| BssMI | GATC | 8 cut(s) | 103, 151, 409, 436, 853, 859, 894, 1100 |
| BssNI | GRCGYC | 1 cut(s) | 78 |
| BssSI | CACGAG | 1 cut(s) | 487 |
| Bst2BI | CACGAG | 1 cut(s) | 487 |
| Bst2UI | CCWGG | 1 cut(s) | 203 |
| Bst4CI | ACNGT | 4 cut(s) | 18, 522, 553, 777 |
| Bst6I | CTCTTC | 1 cut(s) | 1047 |
| BstACI | GRCGYC | 1 cut(s) | 78 |
| BstAUI | TGTACA | 1 cut(s) | 813 |
| BstC8I | GCNNGC | 8 cut(s) | 12, 76, 82, 113, 161, 247, 529, 793 |
| BstDEI | CTNAG | 1 cut(s) | 904 |
| BstDSI | CCRYGG | 1 cut(s) | 954 |
| BstF5I | GGATG | 6 cut(s) | 288, 311, 532, 736, 1020, 1081 |
| BstH2I | RGCGCY | 1 cut(s) | 81 |
| BstHHI | GCGC | 1 cut(s) | 80 |
| BstKTI | GATC | 8 cut(s) | 106, 154, 412, 439, 856, 862, 897, 1103 |
| BstMAI | GTCTC | 1 cut(s) | 356 |
| BstMBI | GATC | 8 cut(s) | 103, 151, 409, 436, 853, 859, 894, 1100 |
| BstMCI | CGRYCG | 2 cut(s) | 75, 856 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 34, 77, 84, 498 |
| BstNI | CCWGG | 1 cut(s) | 203 |
| BstNSI | RCATGY | 2 cut(s) | 940, 995 |
| BstSCI | CCNGG | 1 cut(s) | 201 |
| BstV1I | GCAGC | 2 cut(s) | 590, 1039 |
| BstX2I | RGATCY | 2 cut(s) | 409, 1100 |
| BstYI | RGATCY | 2 cut(s) | 409, 1100 |
| BstZI | CGGCCG | 1 cut(s) | 72 |
| BsuI | GTATCC | 1 cut(s) | 839 |
| BsuRI | GGCC | 4 cut(s) | 28, 74, 527, 531 |
| BtgI | CCRYGG | 1 cut(s) | 954 |
| BtgZI | GCGATG | 1 cut(s) | 52 |
| BtsCI | GGATG | 6 cut(s) | 288, 311, 532, 736, 1020, 1081 |
| BtsIMutI | CAGTG | 4 cut(s) | 14, 227, 558, 728 |
| Cac8I | GCNNGC | 8 cut(s) | 12, 76, 82, 113, 161, 247, 529, 793 |
| CciI | TCATGA | 3 cut(s) | 265, 427, 805 |
| CfoI | GCGC | 1 cut(s) | 80 |
| Cfr10I | RCCGGY | 4 cut(s) | 67, 74, 80, 527 |
| Cfr13I | GGNCC | 1 cut(s) | 27 |
| Csp6I | GTAC | 2 cut(s) | 518, 814 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 647, 669, 682, 704 |
| CviAII | CATG | 7 cut(s) | 218, 266, 428, 806, 932, 937, 992 |
| CviQI | GTAC | 2 cut(s) | 518, 814 |
| DdeI | CTNAG | 1 cut(s) | 904 |
| DinI | GGCGCC | 1 cut(s) | 79 |
| DpnI | GATC | 8 cut(s) | 105, 153, 411, 438, 855, 861, 896, 1102 |
| DpnII | GATC | 8 cut(s) | 103, 151, 409, 436, 853, 859, 894, 1100 |
| DraIII | CACNNNGTG | 1 cut(s) | 20 |
| EaeI | YGGCCR | 3 cut(s) | 72, 525, 529 |
| EagI | CGGCCG | 1 cut(s) | 72 |
| Eam1104I | CTCTTC | 1 cut(s) | 1047 |
| EarI | CTCTTC | 1 cut(s) | 1047 |
| Ecl136II | GAGCTC | 1 cut(s) | 259 |
| EclXI | CGGCCG | 1 cut(s) | 72 |
| Eco24I | GRGCYC | 1 cut(s) | 261 |
| Eco52I | CGGCCG | 1 cut(s) | 72 |
| Eco53kI | GAGCTC | 1 cut(s) | 259 |
| EcoICRI | GAGCTC | 1 cut(s) | 259 |
| EcoRII | CCWGG | 1 cut(s) | 201 |
| EcoT38I | GRGCYC | 1 cut(s) | 261 |
| EgeI | GGCGCC | 1 cut(s) | 79 |
| EheI | GGCGCC | 1 cut(s) | 79 |
| FaeI | CATG | 7 cut(s) | 221, 269, 431, 809, 935, 940, 995 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 246, 278 |
| FaqI | GGGAC | 2 cut(s) | 238, 467 |
| FatI | CATG | 7 cut(s) | 217, 265, 427, 805, 931, 936, 991 |
| FauNDI | CATATG | 1 cut(s) | 367 |
| FbaI | TGATCA | 2 cut(s) | 436, 894 |
| Fnu4HI | GCNGC | 4 cut(s) | 72, 85, 579, 1028 |
| FokI | GGATG | 6 cut(s) | 295, 318, 519, 743, 1007, 1088 |
| FriOI | GRGCYC | 1 cut(s) | 261 |
| FseI | GGCCGGCC | 1 cut(s) | 531 |
| Fsp4HI | GCNGC | 4 cut(s) | 72, 85, 579, 1028 |
| FspBI | CTAG | 2 cut(s) | 11, 387 |
| GlaI | GCGC | 1 cut(s) | 79 |
| GluI | GCNGC | 4 cut(s) | 72, 85, 579, 1028 |
| GsuI | CTGGAG | 1 cut(s) | 251 |
| HaeII | RGCGCY | 1 cut(s) | 81 |
| HaeIII | GGCC | 4 cut(s) | 28, 74, 527, 531 |
| HapII | CCGG | 5 cut(s) | 68, 75, 81, 528, 640 |
| HhaI | GCGC | 1 cut(s) | 80 |
| Hin1I | GRCGYC | 1 cut(s) | 78 |
| Hin1II | CATG | 7 cut(s) | 221, 269, 431, 809, 935, 940, 995 |
| Hin6I | GCGC | 1 cut(s) | 78 |
| HinP1I | GCGC | 1 cut(s) | 78 |
| HincII | GTYRAC | 2 cut(s) | 754, 922 |
| HindII | GTYRAC | 2 cut(s) | 754, 922 |
| HindIII | AAGCTT | 1 cut(s) | 243 |
| HinfI | GANTC | 7 cut(s) | 61, 325, 601, 636, 709, 762, 923 |
| HpaII | CCGG | 5 cut(s) | 68, 75, 81, 528, 640 |
| HphI | GGTGA | 1 cut(s) | 161 |
| Hpy166II | GTNNAC | 4 cut(s) | 754, 766, 814, 922 |
| Hpy188I | TCNGA | 2 cut(s) | 134, 187 |
| Hpy188III | TCNNGA | 7 cut(s) | 266, 428, 478, 806, 835, 857, 1073 |
| Hpy8I | GTNNAC | 4 cut(s) | 754, 766, 814, 922 |
| Hpy99I | CGWCG | 2 cut(s) | 342, 854 |
| HpyAV | CCTTC | 2 cut(s) | 272, 1088 |
| HpyCH4III | ACNGT | 4 cut(s) | 18, 522, 553, 777 |
| HpyCH4V | TGCA | 6 cut(s) | 44, 309, 556, 773, 785, 931 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 34, 77, 84, 498 |
| HpyF3I | CTNAG | 1 cut(s) | 904 |
| Hsp92I | GRCGYC | 1 cut(s) | 78 |
| Hsp92II | CATG | 7 cut(s) | 221, 269, 431, 809, 935, 940, 995 |
| HspAI | GCGC | 1 cut(s) | 78 |
| KasI | GGCGCC | 1 cut(s) | 77 |
| KroI | GCCGGC | 3 cut(s) | 74, 80, 527 |
| KroNI | GCCGGC | 3 cut(s) | 76, 82, 529 |
| Ksp22I | TGATCA | 2 cut(s) | 436, 894 |
| Kzo9I | GATC | 8 cut(s) | 103, 151, 409, 436, 853, 859, 894, 1100 |
| LguI | GCTCTTC | 1 cut(s) | 1047 |
| LmnI | GCTCC | 3 cut(s) | 232, 264, 1087 |
| Lsp1109I | GCAGC | 2 cut(s) | 590, 1039 |
| LweI | GCATC | 4 cut(s) | 296, 520, 721, 1029 |
| MaeI | CTAG | 2 cut(s) | 11, 387 |
| MaeIII | GTNAC | 1 cut(s) | 20 |
| MalI | GATC | 8 cut(s) | 105, 153, 411, 438, 855, 861, 896, 1102 |
| MboI | GATC | 8 cut(s) | 103, 151, 409, 436, 853, 859, 894, 1100 |
| MboII | GAAGA | 6 cut(s) | 70, 218, 416, 482, 704, 1064 |
| MfeI | CAATTG | 2 cut(s) | 664, 780 |
| MflI | RGATCY | 2 cut(s) | 409, 1100 |
| MhlI | GDGCHC | 3 cut(s) | 117, 165, 261 |
| MluCI | AATT | 6 cut(s) | 333, 664, 780, 968, 1005, 1123 |
| Mly113I | GGCGCC | 1 cut(s) | 78 |
| MlyI | GAGTC | 2 cut(s) | 771, 917 |
| MreI | CGCCGGCG | 1 cut(s) | 80 |
| MroNI | GCCGGC | 3 cut(s) | 74, 80, 527 |
| MroXI | GAANNNNTTC | 1 cut(s) | 324 |
| MseI | TTAA | 4 cut(s) | 213, 875, 1008, 1126 |
| MslI | CAYNNNNRTG | 3 cut(s) | 426, 432, 959 |
| MspI | CCGG | 5 cut(s) | 68, 75, 81, 528, 640 |
| MspR9I | CCNGG | 1 cut(s) | 203 |
| MunI | CAATTG | 2 cut(s) | 664, 780 |
| Mva1269I | GAATGC | 1 cut(s) | 294 |
| MvaI | CCWGG | 1 cut(s) | 203 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 34, 77, 84, 498 |
| NaeI | GCCGGC | 3 cut(s) | 76, 82, 529 |
| NarI | GGCGCC | 1 cut(s) | 78 |
| NdeI | CATATG | 1 cut(s) | 367 |
| NdeII | GATC | 8 cut(s) | 103, 151, 409, 436, 853, 859, 894, 1100 |
| NgoMIV | GCCGGC | 3 cut(s) | 74, 80, 527 |
| NheI | GCTAGC | 1 cut(s) | 10 |
| NlaIII | CATG | 7 cut(s) | 221, 269, 431, 809, 935, 940, 995 |
| NlaIV | GGNNCC | 1 cut(s) | 79 |
| NmeAIII | GCCGAG | 1 cut(s) | 87 |
| NmuCI | GTSAC | 1 cut(s) | 20 |
| NspI | RCATGY | 2 cut(s) | 940, 995 |
| PagI | TCATGA | 3 cut(s) | 265, 427, 805 |
| PciI | ACATGT | 1 cut(s) | 936 |
| PciSI | GCTCTTC | 1 cut(s) | 1047 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 108, 156 |
| PctI | GAATGC | 1 cut(s) | 294 |
| PdiI | GCCGGC | 3 cut(s) | 76, 82, 529 |
| PdmI | GAANNNNTTC | 1 cut(s) | 324 |
| PfeI | GAWTC | 5 cut(s) | 61, 325, 601, 636, 709 |
| PfoI | TCCNGGA | 1 cut(s) | 201 |
| PkrI | GCNGC | 4 cut(s) | 73, 86, 580, 1029 |
| Ple19I | CGATCG | 1 cut(s) | 856 |
| PleI | GAGTC | 2 cut(s) | 770, 917 |
| PluTI | GGCGCC | 1 cut(s) | 81 |
| PpsI | GAGTC | 2 cut(s) | 770, 917 |
| PscI | ACATGT | 1 cut(s) | 936 |
| PsiI | TTATAA | 1 cut(s) | 738 |
| Psp124BI | GAGCTC | 1 cut(s) | 261 |
| Psp6I | CCWGG | 1 cut(s) | 201 |
| PspGI | CCWGG | 1 cut(s) | 201 |
| PspN4I | GGNNCC | 1 cut(s) | 79 |
| PspPI | GGNCC | 1 cut(s) | 27 |
| PsuI | RGATCY | 2 cut(s) | 409, 1100 |
| PvuI | CGATCG | 1 cut(s) | 856 |
| RigI | GGCCGGCC | 1 cut(s) | 531 |
| RsaI | GTAC | 2 cut(s) | 519, 815 |
| RsaNI | GTAC | 2 cut(s) | 518, 814 |
| RseI | CAYNNNNRTG | 3 cut(s) | 426, 432, 959 |
| SacI | GAGCTC | 1 cut(s) | 261 |
| SapI | GCTCTTC | 1 cut(s) | 1047 |
| SaqAI | TTAA | 4 cut(s) | 213, 875, 1008, 1126 |
| SatI | GCNGC | 4 cut(s) | 72, 85, 579, 1028 |
| Sau3AI | GATC | 8 cut(s) | 103, 151, 409, 436, 853, 859, 894, 1100 |
| Sau96I | GGNCC | 1 cut(s) | 27 |
| SchI | GAGTC | 2 cut(s) | 771, 917 |
| ScrFI | CCNGG | 1 cut(s) | 203 |
| SduI | GDGCHC | 3 cut(s) | 117, 165, 261 |
| SfaNI | GCATC | 4 cut(s) | 296, 520, 721, 1029 |
| SfoI | GGCGCC | 1 cut(s) | 79 |
| SgrAI | CRCCGGYG | 1 cut(s) | 80 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 426, 432, 959 |
| Sse9I | AATT | 6 cut(s) | 333, 664, 780, 968, 1005, 1123 |
| SsiI | CCGC | 2 cut(s) | 71, 84 |
| SspDI | GGCGCC | 1 cut(s) | 77 |
| SspMI | CTAG | 2 cut(s) | 11, 387 |
| SstI | GAGCTC | 1 cut(s) | 261 |
| StyD4I | CCNGG | 1 cut(s) | 201 |
| TaaI | ACNGT | 4 cut(s) | 18, 522, 553, 777 |
| TaqI | TCGA | 4 cut(s) | 102, 150, 174, 1014 |
| TasI | AATT | 6 cut(s) | 333, 664, 780, 968, 1005, 1123 |
| TatI | WGTACW | 2 cut(s) | 517, 813 |
| TauI | GCSGC | 2 cut(s) | 74, 87 |
| TfiI | GAWTC | 5 cut(s) | 61, 325, 601, 636, 709 |
| Tru1I | TTAA | 4 cut(s) | 213, 875, 1008, 1126 |
| Tru9I | TTAA | 4 cut(s) | 213, 875, 1008, 1126 |
| TscAI | CASTG | 4 cut(s) | 21, 234, 558, 728 |
| TseFI | GTSAC | 1 cut(s) | 20 |
| TseI | GCWGC | 2 cut(s) | 578, 1027 |
| Tsp45I | GTSAC | 1 cut(s) | 20 |
| TspDTI | ATGAA | 7 cut(s) | 17, 254, 282, 410, 416, 575, 794 |
| TspGWI | ACGGA | 1 cut(s) | 971 |
| TspRI | CASTG | 4 cut(s) | 21, 234, 558, 728 |
| XapI | RAATTY | 1 cut(s) | 968 |
| XceI | RCATGY | 2 cut(s) | 940, 995 |
| XmnI | GAANNNNTTC | 1 cut(s) | 324 |
| XspI | CTAG | 2 cut(s) | 11, 387 |