RLG00000005529

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000442
Physical Location & Seq
Reverse (-)
68327767 .. 68328504
738 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005529

Sequence Viewer

Length: 636 bp
ATGACTCCGACTCTCTCAAGAGAGAAATATCGCTGGTCTCTTTCTTGGGGCGACAAACCTACTCGTCTGCTTCTCTCTTTCGATTGCGACGACGACAAATCTTTTTGTCAGACTCTATCTTCAGTTAGAGGATGCGTATTTGCTGTATTTAATGGGGATTGGGTTCTAGTTAACCGGATCTGGTTTGGTGGACGATTTCCTAATGATGTCGATCCAACGAATTGTGTTGGAGGTTGGCATGGGCAGAGCGATGACTTTGATGGATCGCGATCGGCTTTAGGTCGGGGATGTGACCGGATCTGGTTTTGTGGAGATGCAAAGGATCCTGATCTTGGTGGCGGCGCTAGGGTAGCGATTTTGGGATGGTCGGGGATGACAGACGAGGAAGGCTTCGTTTCTCCTGCAGATACGGTGATGGTTTGTCCTGCTGGATGGGATCTGGCAGAGTCCGTCCATTGTCATGGTTTGGCGGGGAAGCTTCTCTCTCCGCGATCAGCCTGGATGGCGTACGTCGATGTCCGAATTGGTAAGGAAGACGACGTTGACCCACCTGTGTTAGGCAGTAGCGAAGTCGGTGGGGGCTGCGGGGTGTTTCCCTTGATTGGCGTCAGCGACGGTGCAACTGATGGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

22.58

Weight (kDa)

4.51

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 268, 490
AciI CCGC 4 cut(s) 339, 470, 488, 585
AclWI GGATC 7 cut(s) 185, 206, 271, 305, 317, 330, 444
AcuI CTGAAG 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 606
AfaI GTAC 1 cut(s) 509
AfiI CCNNNNNNNGG 3 cut(s) 332, 557, 602
AjnI CCWGG 1 cut(s) 497
AluBI AGCT 1 cut(s) 478
AluI AGCT 1 cut(s) 478
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 7 cut(s) 185, 206, 271, 305, 317, 330, 444
ApeKI GCWGC 1 cut(s) 582
AspLEI GCGC 1 cut(s) 344
AsuHPI GGTGA 1 cut(s) 424
BamHI GGATCC 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 540
BbvI GCAGC 1 cut(s) 569
BccI CCATC 6 cut(s) 254, 357, 409, 426, 496, 620
BciT130I CCWGG 1 cut(s) 499
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 2 cut(s) 167, 345
BfmI CTRYAG 1 cut(s) 402
BfoI RGCGCY 1 cut(s) 345
BglI GCCNNNNNGGC 1 cut(s) 503
BisI GCNGC 2 cut(s) 340, 583
BlsI GCNGC 2 cut(s) 341, 584
Bme1390I CCNGG 1 cut(s) 499
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 499
BmsI GCATC 2 cut(s) 122, 304
BpiI GAAGAC 1 cut(s) 540
BsaBI GATNNNNATC 3 cut(s) 210, 268, 327
BsaHI GRCGYC 1 cut(s) 606
BsaI GGTCTC 1 cut(s) 42
BsaWI WCCGGW 2 cut(s) 174, 294
Bsc4I CCNNNNNNNGG 3 cut(s) 332, 557, 602
Bse8I GATNNNNATC 3 cut(s) 210, 268, 327
BseBI CCWGG 1 cut(s) 499
BseGI GGATG 6 cut(s) 137, 293, 368, 378, 437, 507
BseJI GATNNNNATC 3 cut(s) 210, 268, 327
BseLI CCNNNNNNNGG 3 cut(s) 332, 557, 602
BseXI GCAGC 1 cut(s) 569
Bsh1236I CGCG 2 cut(s) 268, 490
Bsh1285I CGRYCG 1 cut(s) 272
BsiEI CGRYCG 1 cut(s) 272
BsiSI CCGG 2 cut(s) 175, 295
BsiWI CGTACG 1 cut(s) 507
BslI CCNNNNNNNGG 3 cut(s) 332, 557, 602
BsmAI GTCTC 1 cut(s) 42
Bso31I GGTCTC 1 cut(s) 42
Bsp143I GATC 9 cut(s) 177, 211, 263, 269, 297, 322, 328, 436, 491
Bsp68I TCGCGA 1 cut(s) 268
BspACI CCGC 4 cut(s) 339, 470, 488, 585
BspFNI CGCG 2 cut(s) 268, 490
BspLI GGNNCC 1 cut(s) 324
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 7 cut(s) 185, 206, 271, 305, 317, 330, 444
BspTNI GGTCTC 1 cut(s) 42
BssMI GATC 9 cut(s) 177, 211, 263, 269, 297, 322, 328, 436, 491
BssNI GRCGYC 1 cut(s) 606
Bst2UI CCWGG 1 cut(s) 499
Bst4CI ACNGT 2 cut(s) 412, 617
BstACI GRCGYC 1 cut(s) 606
BstENI CCTNNNNNAGG 1 cut(s) 555
BstF5I GGATG 6 cut(s) 137, 293, 368, 378, 437, 507
BstFNI CGCG 2 cut(s) 268, 490
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 9 cut(s) 180, 214, 266, 272, 300, 325, 331, 439, 494
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 9 cut(s) 177, 211, 263, 269, 297, 322, 328, 436, 491
BstMCI CGRYCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 2 cut(s) 350, 503
BstNI CCWGG 1 cut(s) 499
BstSCI CCNGG 1 cut(s) 497
BstSFI CTRYAG 1 cut(s) 402
BstUI CGCG 2 cut(s) 268, 490
BstV1I GCAGC 1 cut(s) 569
BstV2I GAAGAC 1 cut(s) 540
BstX2I RGATCY 4 cut(s) 177, 297, 322, 436
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 4 cut(s) 177, 297, 322, 436
BtgZI GCGATG 1 cut(s) 264
BtsCI GGATG 6 cut(s) 137, 293, 368, 378, 437, 507
BtuMI TCGCGA 1 cut(s) 268
CfoI GCGC 1 cut(s) 344
CseI GACGC 1 cut(s) 595
Csp6I GTAC 1 cut(s) 508
CviAII CATG 2 cut(s) 239, 461
CviJI RGCY 5 cut(s) 275, 390, 478, 497, 582
CviKI_1 RGCY 5 cut(s) 275, 390, 478, 497, 582
CviQI GTAC 1 cut(s) 508
DpnI GATC 9 cut(s) 179, 213, 265, 271, 299, 324, 330, 438, 493
DpnII GATC 9 cut(s) 177, 211, 263, 269, 297, 322, 328, 436, 491
Eco31I GGTCTC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 105
EcoNI CCTNNNNNAGG 1 cut(s) 555
EcoRII CCWGG 1 cut(s) 497
FaeI CATG 2 cut(s) 242, 464
FaiI YATR 2 cut(s) 240, 462
FatI CATG 2 cut(s) 238, 460
FauI CCCGC 2 cut(s) 463, 578
Fnu4HI GCNGC 2 cut(s) 340, 583
FokI GGATG 6 cut(s) 144, 300, 375, 385, 444, 514
Fsp4HI GCNGC 2 cut(s) 340, 583
FspBI CTAG 2 cut(s) 167, 345
GlaI GCGC 1 cut(s) 343
GluI GCNGC 2 cut(s) 340, 583
HaeII RGCGCY 1 cut(s) 345
HapII CCGG 2 cut(s) 175, 295
HgaI GACGC 1 cut(s) 595
HhaI GCGC 1 cut(s) 344
Hin1I GRCGYC 1 cut(s) 606
Hin1II CATG 2 cut(s) 242, 464
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HincII GTYRAC 2 cut(s) 172, 544
HindII GTYRAC 2 cut(s) 172, 544
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 4 cut(s) 4, 10, 112, 446
HpaI GTTAAC 1 cut(s) 172
HpaII CCGG 2 cut(s) 175, 295
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 3 cut(s) 172, 191, 544
Hpy188I TCNGA 3 cut(s) 9, 111, 521
Hpy188III TCNNGA 3 cut(s) 18, 267, 326
Hpy8I GTNNAC 3 cut(s) 172, 191, 544
Hpy99I CGWCG 5 cut(s) 92, 95, 515, 542, 617
HpyAV CCTTC 1 cut(s) 380
HpyCH4III ACNGT 2 cut(s) 412, 617
HpyCH4IV ACGT 2 cut(s) 510, 540
HpyCH4V TGCA 3 cut(s) 317, 404, 620
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 503
HpySE526I ACGT 2 cut(s) 510, 540
Hsp92I GRCGYC 1 cut(s) 606
Hsp92II CATG 2 cut(s) 242, 464
HspAI GCGC 1 cut(s) 342
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 9 cut(s) 177, 211, 263, 269, 297, 322, 328, 436, 491
Lsp1109I GCAGC 1 cut(s) 569
LweI GCATC 2 cut(s) 122, 304
MaeI CTAG 2 cut(s) 167, 345
MaeII ACGT 2 cut(s) 510, 540
MaeIII GTNAC 1 cut(s) 290
MalI GATC 9 cut(s) 179, 213, 265, 271, 299, 324, 330, 438, 493
MboI GATC 9 cut(s) 177, 211, 263, 269, 297, 322, 328, 436, 491
MboII GAAGA 2 cut(s) 111, 545
MflI RGATCY 4 cut(s) 177, 297, 322, 436
MluCI AATT 2 cut(s) 220, 522
MlyI GAGTC 3 cut(s) 4, 106, 455
MmeI TCCRAC 3 cut(s) 32, 208, 239
MnlI CCTC 3 cut(s) 122, 224, 376
MseI TTAA 2 cut(s) 150, 171
MslI CAYNNNNRTG 1 cut(s) 459
MspI CCGG 2 cut(s) 175, 295
MspR9I CCNGG 1 cut(s) 499
MvaI CCWGG 1 cut(s) 499
MvnI CGCG 2 cut(s) 268, 490
MwoI GCNNNNNNNGC 2 cut(s) 350, 503
NdeII GATC 9 cut(s) 177, 211, 263, 269, 297, 322, 328, 436, 491
NlaIII CATG 2 cut(s) 242, 464
NlaIV GGNNCC 1 cut(s) 324
NmuCI GTSAC 1 cut(s) 290
NruI TCGCGA 1 cut(s) 268
PcsI WCGNNNNNNNCGW 1 cut(s) 87
Pfl23II CGTACG 1 cut(s) 507
PkrI GCNGC 2 cut(s) 341, 584
Ple19I CGATCG 1 cut(s) 272
PleI GAGTC 3 cut(s) 4, 106, 454
PpsI GAGTC 3 cut(s) 4, 106, 454
Psp6I CCWGG 1 cut(s) 497
PspGI CCWGG 1 cut(s) 497
PspLI CGTACG 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 324
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 4 cut(s) 177, 297, 322, 436
PvuI CGATCG 1 cut(s) 272
RruI TCGCGA 1 cut(s) 268
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 1 cut(s) 459
SaqAI TTAA 2 cut(s) 150, 171
SatI GCNGC 2 cut(s) 340, 583
Sau3AI GATC 9 cut(s) 177, 211, 263, 269, 297, 322, 328, 436, 491
SchI GAGTC 3 cut(s) 4, 106, 455
ScrFI CCNGG 1 cut(s) 499
SetI ASST 7 cut(s) 61, 235, 283, 480, 513, 543, 553
SfaNI GCATC 2 cut(s) 122, 304
SfcI CTRYAG 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 2 cut(s) 220, 522
SsiI CCGC 4 cut(s) 339, 470, 488, 585
SspMI CTAG 2 cut(s) 167, 345
StyD4I CCNGG 1 cut(s) 497
TaaI ACNGT 2 cut(s) 412, 617
TaiI ACGT 2 cut(s) 513, 543
TaqI TCGA 3 cut(s) 81, 210, 513
TasI AATT 2 cut(s) 220, 522
TauI GCSGC 1 cut(s) 342
Tru1I TTAA 2 cut(s) 150, 171
Tru9I TTAA 2 cut(s) 150, 171
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 1 cut(s) 582
Tsp45I GTSAC 1 cut(s) 290
TspGWI ACGGA 1 cut(s) 439
XagI CCTNNNNNAGG 1 cut(s) 555
XspI CTAG 2 cut(s) 167, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.