Rh2BG645400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000442
Physical Location & Seq
Forward (+)
86524338 .. 86527501
3164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG645400.1

Sequence Viewer

Length: 1125 bp
ATGCAGGGAAAACAGCAAAATAAGACTTGTGCAATGTGCACTTGTTGTAGGCTTGGAATTCTGGATTTGTGGACCAAGGCAGCATCTCTCGAACTCTCCGCCGAAAAGCATCAGACGAGAGCTCTCGACCGCGACGGCGACGGCGACGGCGGACGGACTCTCCGTGCCCACTCTCTTCTGTCATTGCCCGCTAAGATGGCATTTCTTCCTCACACTCAGGGCGCTGGAAGACTGTATCTTGAGGACGTGAAGGGCTCGGCATCAATGGAGAAGAAGAAATTTTATCTGAAAGATATTCTGGGGGAGATTACTTGGAAAATAACTAATGGGATCGAAAGTGGGTCTTTAGATCCCAAGAAGATGCCTATTTTGGATGATCGAGCCTCTTTGCCAGATGAGCCCTATATCATTGGAAAGTACCCGAATTATTTGGAGTCGGTGAAGCAGTTTTTGAAGGATATGCAGGAAGGAGATTGGGAGCAAATGACAGCAACAGAACGGCTTCTGTTTGATGATTTCAAAAGCTATCTCAACAAAGTCACCAATGTGAGGCATCTGATTCTGCTTGCTAGACACCCTCATTTTCACACACCTACACAAGAATTGGTGTTCATCCCATCAGCTCTGGATCAGTTTTATAGCATCCCGAAGAACCCCTTCTCCAATTCAAAGCGATACTTCCCGGAACTATGTGATGAGCATCACAATAGTCCGGCTGATATACCTGCAACAATTGATGATCCAGAGGCAACACTGATGAAATGGGAGATTGCATATACGAAGATGGTGCAAAGGAATGGCAGAAAGGTGAACATTGAGGGGTTCATTGCTCAACTTCCTCCAGAATTTCAGAAACAATTCAAGCATGGAATCAAGCATAAGCTGGATGTTCCACACAAATACCAGAACAGTAATCCGGTTGATGAGCTGAACTTCATTCGCAACAGCTTGAAGCATATTCACGAAAAGTTTCCAAATGAAACGGTAGTTGAAGATATGGAGATACTCAAGCAGCTGAAAACGGTAACTTCAATTTATTCCATGGAGATGTTTCAGTTCTACTGGTGCTATGATGGCCATGCTAGGGGAACCATCGATCTCAACTTCATCAACCAGGCCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

374

Amino Acids

43.05

Weight (kDa)

6.74

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 733
AccII CGCG 1 cut(s) 132
AciI CCGC 4 cut(s) 99, 130, 150, 189
AclWI GGATC 4 cut(s) 338, 344, 636, 734
AcoI YGGCCR 1 cut(s) 1075
AcsI RAATTY 3 cut(s) 57, 278, 845
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 2 cut(s) 549, 1084
AgsI TTSAA 7 cut(s) 454, 520, 669, 862, 952, 992, 1032
AjiI CACGTC 1 cut(s) 247
AjnI CCWGG 1 cut(s) 1113
AleI CACNNNNGTG 1 cut(s) 545
AloI GAACNNNNNNTCC 2 cut(s) 644, 676
AluBI AGCT 7 cut(s) 122, 525, 623, 883, 928, 948, 1015
AluI AGCT 7 cut(s) 122, 525, 623, 883, 928, 948, 1015
Alw21I GWGCWC 2 cut(s) 41, 124
Alw44I GTGCAC 1 cut(s) 37
AlwI GGATC 4 cut(s) 338, 344, 636, 734
AoxI GGCC 2 cut(s) 1075, 1116
ApaLI GTGCAC 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 80, 1012
ApoI RAATTY 3 cut(s) 57, 278, 845
Asp700I GAANNNNTTC 4 cut(s) 501, 656, 857, 969
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 72
AsuC2I CCSGG 2 cut(s) 683, 1120
AsuHPI GGTGA 3 cut(s) 451, 532, 820
AvaII GGWCC 1 cut(s) 72
BaeGI GKGCMC 2 cut(s) 41, 169
BalI TGGCCA 1 cut(s) 1077
BanII GRGCYC 3 cut(s) 124, 257, 402
BbsI GAAGAC 1 cut(s) 235
Bbv12I GWGCWC 2 cut(s) 41, 124
BbvI GCAGC 2 cut(s) 92, 1024
BccI CCATC 5 cut(s) 190, 625, 778, 1067, 1100
BceAI ACGGC 4 cut(s) 151, 157, 163, 515
BcgI CGANNNNNNTGC 2 cut(s) 769, 803
BciT130I CCWGG 1 cut(s) 1115
BcnI CCSGG 2 cut(s) 683, 1120
BfaI CTAG 2 cut(s) 570, 1083
BfoI RGCGCY 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 733
BisI GCNGC 2 cut(s) 81, 1013
BlsI GCNGC 2 cut(s) 82, 1014
Bme1390I CCNGG 3 cut(s) 683, 1115, 1120
Bme18I GGWCC 1 cut(s) 72
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 1090
BmrFI CCNGG 3 cut(s) 683, 1115, 1120
BmsI GCATC 7 cut(s) 92, 118, 269, 351, 562, 651, 709
BpiI GAAGAC 1 cut(s) 235
BpmI CTGGAG 1 cut(s) 825
BpuEI CTTGAG 2 cut(s) 260, 992
BpuMI CCSGG 2 cut(s) 683, 1120
Bsa29I ATCGAT 1 cut(s) 1095
BsaBI GATNNNNATC 1 cut(s) 699
BsaJI CCNNGG 2 cut(s) 75, 1041
BsaWI WCCGGW 1 cut(s) 916
BsaXI ACNNNNNCTCC 4 cut(s) 144, 174, 644, 674
Bsc4I CCNNNNNNNGG 2 cut(s) 549, 1084
Bse1I ACTGG 1 cut(s) 1067
Bse3DI GCAATG 3 cut(s) 39, 182, 825
Bse8I GATNNNNATC 1 cut(s) 699
BseBI CCWGG 1 cut(s) 1115
BseCI ATCGAT 1 cut(s) 1095
BseDI CCNNGG 2 cut(s) 75, 1041
BseGI GGATG 4 cut(s) 379, 612, 642, 892
BseJI GATNNNNATC 1 cut(s) 699
BseLI CCNNNNNNNGG 2 cut(s) 549, 1084
BseMI GCAATG 3 cut(s) 39, 182, 825
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 1067
BseSI GKGCMC 2 cut(s) 41, 169
BseXI GCAGC 2 cut(s) 92, 1024
Bsh1236I CGCG 1 cut(s) 132
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 2 cut(s) 1077, 1118
BshVI ATCGAT 1 cut(s) 1095
BsiEI CGRYCG 1 cut(s) 130
BsiHKAI GWGCWC 2 cut(s) 41, 124
BsiSI CCGG 4 cut(s) 683, 713, 917, 1119
BslI CCNNNNNNNGG 2 cut(s) 549, 1084
BsnI GGCC 2 cut(s) 1077, 1118
Bsp1286I GDGCHC 5 cut(s) 41, 124, 169, 257, 402
Bsp143I GATC 6 cut(s) 330, 349, 376, 628, 739, 1096
Bsp19I CCATGG 1 cut(s) 1041
BspACI CCGC 4 cut(s) 99, 130, 150, 189
BspANI GGCC 2 cut(s) 1077, 1118
BspCNI CTCAG 1 cut(s) 229
BspDI ATCGAT 1 cut(s) 1095
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 1090
BspMI ACCTGC 1 cut(s) 733
BspPI GGATC 4 cut(s) 338, 344, 636, 734
BsrDI GCAATG 3 cut(s) 39, 182, 825
BsrI ACTGG 1 cut(s) 1067
BssECI CCNNGG 2 cut(s) 75, 1041
BssMI GATC 6 cut(s) 330, 349, 376, 628, 739, 1096
BssT1I CCWWGG 2 cut(s) 75, 1041
Bst2UI CCWGG 1 cut(s) 1115
Bst4CI ACNGT 4 cut(s) 234, 911, 985, 1024
Bst6I CTCTTC 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 189, 567
BstDEI CTNAG 2 cut(s) 192, 216
BstDSI CCRYGG 1 cut(s) 1041
BstF5I GGATG 4 cut(s) 379, 612, 642, 892
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 6 cut(s) 333, 352, 379, 631, 742, 1099
BstMBI GATC 6 cut(s) 330, 349, 376, 628, 739, 1096
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 3 cut(s) 197, 397, 1074
BstNI CCWGG 1 cut(s) 1115
BstSCI CCNGG 3 cut(s) 681, 1113, 1118
BstSLI GKGCMC 2 cut(s) 41, 169
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 92, 1024
BstV2I GAAGAC 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
Bsu15I ATCGAT 1 cut(s) 1095
BsuRI GGCC 2 cut(s) 1077, 1118
BsuTUI ATCGAT 1 cut(s) 1095
BtgI CCRYGG 1 cut(s) 1041
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 4 cut(s) 379, 612, 642, 892
BtsIMutI CAGTG 1 cut(s) 752
BveI ACCTGC 1 cut(s) 733
Cac8I GCNNGC 2 cut(s) 189, 567
CfoI GCGC 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 72
ClaI ATCGAT 1 cut(s) 1095
Csp6I GTAC 1 cut(s) 418
CviAII CATG 3 cut(s) 866, 1042, 1079
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 2 cut(s) 192, 216
DpnI GATC 6 cut(s) 332, 351, 378, 630, 741, 1098
DpnII GATC 6 cut(s) 330, 349, 376, 628, 739, 1096
EaeI YGGCCR 1 cut(s) 1075
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
EciI GGCGGA 2 cut(s) 88, 165
Ecl136II GAGCTC 1 cut(s) 122
Eco130I CCWWGG 2 cut(s) 75, 1041
Eco24I GRGCYC 3 cut(s) 124, 257, 402
Eco47I GGWCC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 1113
EcoT14I CCWWGG 2 cut(s) 75, 1041
EcoT38I GRGCYC 3 cut(s) 124, 257, 402
ErhI CCWWGG 2 cut(s) 75, 1041
FaeI CATG 3 cut(s) 869, 1045, 1082
FalI AAGNNNNNCTT 6 cut(s) 328, 360, 641, 673, 662, 694
FatI CATG 3 cut(s) 865, 1041, 1078
FauI CCCGC 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 81, 1013
FokI GGATG 4 cut(s) 386, 599, 629, 899
FriOI GRGCYC 3 cut(s) 124, 257, 402
Fsp4HI GCNGC 2 cut(s) 81, 1013
FspBI CTAG 2 cut(s) 570, 1083
GlaI GCGC 1 cut(s) 223
GluI GCNGC 2 cut(s) 81, 1013
GsuI CTGGAG 1 cut(s) 825
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 2 cut(s) 1077, 1118
HapII CCGG 4 cut(s) 683, 713, 917, 1119
HhaI GCGC 1 cut(s) 224
Hin1II CATG 3 cut(s) 869, 1045, 1082
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 4 cut(s) 157, 434, 559, 870
HpaII CCGG 4 cut(s) 683, 713, 917, 1119
HphI GGTGA 3 cut(s) 451, 532, 820
Hpy166II GTNNAC 3 cut(s) 39, 72, 811
Hpy188I TCNGA 4 cut(s) 114, 288, 558, 852
Hpy188III TCNNGA 9 cut(s) 62, 89, 125, 239, 626, 646, 743, 842, 962
Hpy8I GTNNAC 3 cut(s) 39, 72, 811
Hpy99I CGWCG 3 cut(s) 137, 143, 149
HpyAV CCTTC 4 cut(s) 244, 448, 461, 667
HpyCH4III ACNGT 4 cut(s) 234, 911, 985, 1024
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 7 cut(s) 4, 32, 39, 463, 728, 773, 790
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 397, 1074
HpyF3I CTNAG 2 cut(s) 192, 216
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 3 cut(s) 869, 1045, 1082
HspAI GCGC 1 cut(s) 222
Kzo9I GATC 6 cut(s) 330, 349, 376, 628, 739, 1096
LmnI GCTCC 1 cut(s) 478
Lsp1109I GCAGC 2 cut(s) 92, 1024
LweI GCATC 7 cut(s) 92, 118, 269, 351, 562, 651, 709
MaeI CTAG 2 cut(s) 570, 1083
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 2 cut(s) 538, 1024
MalI GATC 6 cut(s) 332, 351, 378, 630, 741, 1098
MboI GATC 6 cut(s) 330, 349, 376, 628, 739, 1096
MboII GAAGA 9 cut(s) 167, 197, 240, 283, 286, 370, 661, 793, 1004
MfeI CAATTG 1 cut(s) 732
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 5 cut(s) 41, 124, 169, 257, 402
MlsI TGGCCA 1 cut(s) 1077
MluCI AATT 9 cut(s) 57, 278, 424, 602, 664, 732, 845, 857, 1032
MluNI TGGCCA 1 cut(s) 1077
MlyI GAGTC 2 cut(s) 151, 443
MnlI CCTC 8 cut(s) 219, 235, 394, 543, 588, 739, 811, 849
Mox20I TGGCCA 1 cut(s) 1077
MroXI GAANNNNTTC 4 cut(s) 501, 656, 857, 969
MscI TGGCCA 1 cut(s) 1077
MslI CAYNNNNRTG 2 cut(s) 545, 1046
Msp20I TGGCCA 1 cut(s) 1077
MspA1I CMGCKG 1 cut(s) 1015
MspI CCGG 4 cut(s) 683, 713, 917, 1119
MspR9I CCNGG 3 cut(s) 683, 1115, 1120
MunI CAATTG 1 cut(s) 732
MvaI CCWGG 1 cut(s) 1115
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 197, 397, 1074
NciI CCSGG 2 cut(s) 683, 1120
NcoI CCATGG 1 cut(s) 1041
NdeII GATC 6 cut(s) 330, 349, 376, 628, 739, 1096
NlaIII CATG 3 cut(s) 869, 1045, 1082
NlaIV GGNNCC 1 cut(s) 1090
NmeAIII GCCGAG 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 538
OliI CACNNNNGTG 1 cut(s) 545
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 160
PdmI GAANNNNTTC 4 cut(s) 501, 656, 857, 969
PfeI GAWTC 2 cut(s) 559, 870
PfoI TCCNGGA 1 cut(s) 681
PkrI GCNGC 2 cut(s) 82, 1014
PleI GAGTC 2 cut(s) 151, 442
PpsI GAGTC 2 cut(s) 151, 442
Psp124BI GAGCTC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 1113
PspGI CCWGG 1 cut(s) 1113
PspN4I GGNNCC 1 cut(s) 1090
PspPI GGNCC 1 cut(s) 72
PsuI RGATCY 1 cut(s) 349
PvuII CAGCTG 1 cut(s) 1015
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 2 cut(s) 545, 1046
SacI GAGCTC 1 cut(s) 124
SatI GCNGC 2 cut(s) 81, 1013
Sau3AI GATC 6 cut(s) 330, 349, 376, 628, 739, 1096
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 2 cut(s) 151, 443
ScrFI CCNGG 3 cut(s) 683, 1115, 1120
SduI GDGCHC 5 cut(s) 41, 124, 169, 257, 402
SfaNI GCATC 7 cut(s) 92, 118, 269, 351, 562, 651, 709
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 2 cut(s) 545, 1046
SmlI CTYRAG 2 cut(s) 239, 1007
SmoI CTYRAG 2 cut(s) 239, 1007
Sse9I AATT 9 cut(s) 57, 278, 424, 602, 664, 732, 845, 857, 1032
SsiI CCGC 4 cut(s) 99, 130, 150, 189
SspMI CTAG 2 cut(s) 570, 1083
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 3 cut(s) 681, 1113, 1118
StyI CCWWGG 2 cut(s) 75, 1041
TaaI ACNGT 4 cut(s) 234, 911, 985, 1024
TaiI ACGT 1 cut(s) 249
TaqI TCGA 5 cut(s) 90, 126, 333, 379, 1095
TasI AATT 9 cut(s) 57, 278, 424, 602, 664, 732, 845, 857, 1032
TfiI GAWTC 2 cut(s) 559, 870
TscAI CASTG 1 cut(s) 759
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 2 cut(s) 80, 1012
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 6 cut(s) 601, 773, 814, 925, 993, 1096
TspGWI ACGGA 2 cut(s) 152, 169
TspRI CASTG 1 cut(s) 759
VneI GTGCAC 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 3 cut(s) 57, 278, 845
XmnI GAANNNNTTC 4 cut(s) 501, 656, 857, 969
XspI CTAG 2 cut(s) 570, 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.