Rorug02G0556200

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000442
Physical Location & Seq
Forward (+)
68297476 .. 68299836
2361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0556200.1

Sequence Viewer

Length: 1074 bp
ATGATGATAGAGAGCAATATGGATAAAGACCACACCTGGATTGAAATTAGACAAGATGAAGGGAATTTGACAGGAGCAAATAATGTGGACGGGCAAATTTTGAGTGAAAATAGAAATGATGAAGACGAATTATTAGCATCATTGATTCGAGGAAAGTTTTTAGAGCCACCTCCATCACCACCTGGCATATTTAAAATTCCCAAGATTCTTCAGGGTCCTAATGAAGCTGAGTTGATACTTCCAAAGTTAGTATCAATTGGGCCATATCACCATGGTAAAAGGAACCTTCAAGCCATGGAAAGAATAAAATTATGCTACTTGCATTGCCTCCTCAATCGAACACCAACTCCTGACACCACTTTGAAGCACTTGGTCAAAAGAGTTAGAGCTATAGAACAAGCTTGTCGTGATTGCTATGACGAAAAAATTGATATGAGTAGTCACCAGTTTGTAGAAATGATGGTGGTTGATGGTTGCTTTGTTATTGAGTTCATGCTCGGAAGGACATACAGCAAGATTCTTTGGAATGATCCTCTGTCCCAAAGTTCATGGATGCGCACCCCACTTATATCAGATTTGTTTCTACTGGAAAACCAGTTGCCTTGGTTAGTTCTTGATTGTTTATTCCAATATCTTGTAAAAGAAAATGCTGACGATGAACCTGTTGGAAAGCATGAGTTTCTATCTGAGCTTACTCTCAAATTTTGTCAGTTGCACACCATGCGTTTTCTAAAGCCAAATGATGGAGCATTCAAAATCAGGCATTTACTTGACCACATAAGAATTGGTATAGTTGGACCAGAAAAGCTAACCATCAGTTCACGTCGTTATTTGGTTCCCTCTGTGACAGAACTCCGGCAAATTGGAGTCATATTTAAACGTGGAGACATGTCTTGCCACACACTCAACATAGCCTTCCACAATGGAGTGATGGAGATTCCGGAAATATGTATTGGCAATAATCGATCTCTCTTTATCAACCTCATAGCCCTCGAAGAATGCCAACAAGGCCTCATAGAAAGGAATTATACATACCACTTTGAGCAAGGAGGACATAACTTGTCTCTTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

357

Amino Acids

41.12

Weight (kDa)

5.97

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 63 - 336 1.2e-68 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 557
AccB7I CCANNNNNTGG 1 cut(s) 743
AccIII TCCGGA 1 cut(s) 940
AclWI GGATC 1 cut(s) 524
AcsI RAATTY 4 cut(s) 64, 96, 195, 701
AcuI CTGAAG 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 743
AflIII ACRYGT 1 cut(s) 888
AgsI TTSAA 5 cut(s) 44, 290, 364, 754, 1070
AjiI CACGTC 1 cut(s) 824
AjnI CCWGG 2 cut(s) 35, 181
AjuI GAANNNNNNNTTGG 2 cut(s) 936, 968
AloI GAACNNNNNNTCC 2 cut(s) 331, 363
AluBI AGCT 5 cut(s) 227, 389, 401, 691, 808
AluI AGCT 5 cut(s) 227, 389, 401, 691, 808
Alw26I GTCTC 2 cut(s) 879, 1068
AlwI GGATC 1 cut(s) 524
Aor13HI TCCGGA 1 cut(s) 940
AoxI GGCC 2 cut(s) 260, 1009
ApoI RAATTY 4 cut(s) 64, 96, 195, 701
AspLEI GCGC 1 cut(s) 558
AspS9I GGNCC 3 cut(s) 215, 260, 797
AsuHPI GGTGA 3 cut(s) 168, 260, 434
AvaII GGWCC 2 cut(s) 215, 797
BbsI GAAGAC 1 cut(s) 129
BccI CCATC 6 cut(s) 181, 454, 464, 737, 821, 925
BciT130I CCWGG 2 cut(s) 37, 183
BcoDI GTCTC 2 cut(s) 879, 1068
BfmI CTRYAG 1 cut(s) 390
BglI GCCNNNNNGGC 1 cut(s) 1008
Bme1390I CCNGG 2 cut(s) 37, 183
Bme18I GGWCC 2 cut(s) 215, 797
BmgBI CACGTC 1 cut(s) 824
BmgT120I GGNCC 3 cut(s) 215, 260, 797
BmiI GGNNCC 3 cut(s) 216, 284, 837
BmrFI CCNGG 2 cut(s) 37, 183
BmsI GCATC 2 cut(s) 146, 543
BpiI GAAGAC 1 cut(s) 129
Bsa29I ATCGAT 1 cut(s) 964
BsaJI CCNNGG 3 cut(s) 271, 294, 602
BsaWI WCCGGW 1 cut(s) 940
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 1 cut(s) 743
Bse1I ACTGG 3 cut(s) 445, 591, 595
Bse3DI GCAATG 1 cut(s) 322
BseAI TCCGGA 1 cut(s) 940
BseBI CCWGG 2 cut(s) 37, 183
BseCI ATCGAT 1 cut(s) 964
BseDI CCNNGG 3 cut(s) 271, 294, 602
BseGI GGATG 1 cut(s) 558
BseLI CCNNNNNNNGG 1 cut(s) 743
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 219, 678
BseNI ACTGG 3 cut(s) 445, 591, 595
BseRI GAGGAG 1 cut(s) 320
BshFI GGCC 2 cut(s) 262, 1011
BshVI ATCGAT 1 cut(s) 964
BsiSI CCGG 2 cut(s) 856, 941
BslFI GGGAC 1 cut(s) 523
BslI CCNNNNNNNGG 1 cut(s) 743
BsmAI GTCTC 2 cut(s) 879, 1068
BsmFI GGGAC 1 cut(s) 523
BsmI GAATGC 2 cut(s) 749, 1004
BsnI GGCC 2 cut(s) 262, 1011
Bsp13I TCCGGA 1 cut(s) 940
Bsp143I GATC 2 cut(s) 529, 965
Bsp19I CCATGG 2 cut(s) 271, 294
BspANI GGCC 2 cut(s) 262, 1011
BspCNI CTCAG 2 cut(s) 220, 679
BspDI ATCGAT 1 cut(s) 964
BspEI TCCGGA 1 cut(s) 940
BspLI GGNNCC 3 cut(s) 216, 284, 837
BspPI GGATC 1 cut(s) 524
BsrDI GCAATG 1 cut(s) 322
BsrI ACTGG 3 cut(s) 445, 591, 595
BssECI CCNNGG 3 cut(s) 271, 294, 602
BssMI GATC 2 cut(s) 529, 965
BssT1I CCWWGG 3 cut(s) 271, 294, 602
Bst2UI CCWGG 2 cut(s) 37, 183
Bst6I CTCTTC 1 cut(s) 1071
BstAPI GCANNNNNTGC 1 cut(s) 721
BstDEI CTNAG 2 cut(s) 228, 687
BstDSI CCRYGG 2 cut(s) 271, 294
BstF5I GGATG 1 cut(s) 558
BstHHI GCGC 1 cut(s) 558
BstKTI GATC 2 cut(s) 532, 968
BstMAI GTCTC 2 cut(s) 879, 1068
BstMBI GATC 2 cut(s) 529, 965
BstMWI GCNNNNNNNGC 2 cut(s) 721, 1008
BstNI CCWGG 2 cut(s) 37, 183
BstNSI RCATGY 1 cut(s) 892
BstSCI CCNGG 2 cut(s) 35, 181
BstSFI CTRYAG 1 cut(s) 390
BstV2I GAAGAC 1 cut(s) 129
Bsu15I ATCGAT 1 cut(s) 964
BsuRI GGCC 2 cut(s) 262, 1011
BsuTUI ATCGAT 1 cut(s) 964
BtgI CCRYGG 2 cut(s) 271, 294
BtrI CACGTC 1 cut(s) 824
BtsCI GGATG 1 cut(s) 558
CfoI GCGC 1 cut(s) 558
Cfr13I GGNCC 3 cut(s) 215, 260, 797
ClaI ATCGAT 1 cut(s) 964
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviAII CATG 7 cut(s) 272, 295, 493, 549, 674, 721, 889
DdeI CTNAG 2 cut(s) 228, 687
DpnI GATC 2 cut(s) 531, 967
DpnII GATC 2 cut(s) 529, 965
DraI TTTAAA 2 cut(s) 193, 877
Eam1104I CTCTTC 1 cut(s) 1071
EarI CTCTTC 1 cut(s) 1071
Eco130I CCWWGG 3 cut(s) 271, 294, 602
Eco147I AGGCCT 1 cut(s) 1011
Eco47I GGWCC 2 cut(s) 215, 797
Eco57I CTGAAG 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 215
EcoRII CCWGG 2 cut(s) 35, 181
EcoT14I CCWWGG 3 cut(s) 271, 294, 602
ErhI CCWWGG 3 cut(s) 271, 294, 602
FaeI CATG 7 cut(s) 275, 298, 496, 552, 677, 724, 892
FaqI GGGAC 1 cut(s) 523
FatI CATG 7 cut(s) 271, 294, 492, 548, 673, 720, 888
FokI GGATG 1 cut(s) 565
FspAI RTGCGCAY 1 cut(s) 557
FspI TGCGCA 1 cut(s) 557
GlaI GCGC 1 cut(s) 557
HaeIII GGCC 2 cut(s) 262, 1011
HapII CCGG 2 cut(s) 856, 941
HhaI GCGC 1 cut(s) 558
Hin1II CATG 7 cut(s) 275, 298, 496, 552, 677, 724, 892
Hin6I GCGC 1 cut(s) 556
HinP1I GCGC 1 cut(s) 556
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 5 cut(s) 145, 205, 517, 867, 937
HpaII CCGG 2 cut(s) 856, 941
HphI GGTGA 3 cut(s) 168, 260, 434
Hpy166II GTNNAC 2 cut(s) 88, 821
Hpy188I TCNGA 3 cut(s) 500, 574, 688
Hpy188III TCNNGA 4 cut(s) 350, 407, 614, 941
Hpy8I GTNNAC 2 cut(s) 88, 821
Hpy99I CGWCG 1 cut(s) 828
HpyAV CCTTC 4 cut(s) 53, 296, 495, 925
HpyCH4IV ACGT 2 cut(s) 823, 880
HpyCH4V TGCA 2 cut(s) 322, 715
HpyF10VI GCNNNNNNNGC 2 cut(s) 721, 1008
HpyF3I CTNAG 2 cut(s) 228, 687
HpySE526I ACGT 2 cut(s) 823, 880
Hsp92II CATG 7 cut(s) 275, 298, 496, 552, 677, 724, 892
HspAI GCGC 1 cut(s) 556
Kpn2I TCCGGA 1 cut(s) 940
Kzo9I GATC 2 cut(s) 529, 965
LmnI GCTCC 2 cut(s) 74, 746
LweI GCATC 2 cut(s) 146, 543
MaeII ACGT 2 cut(s) 823, 880
MaeIII GTNAC 2 cut(s) 440, 844
MalI GATC 2 cut(s) 531, 967
MboI GATC 2 cut(s) 529, 965
MboII GAAGA 4 cut(s) 134, 200, 1007, 1058
MfeI CAATTG 1 cut(s) 255
MlyI GAGTC 1 cut(s) 876
MmeI TCCRAC 2 cut(s) 646, 775
MroI TCCGGA 1 cut(s) 940
MseI TTAA 2 cut(s) 192, 876
MspI CCGG 2 cut(s) 856, 941
MspR9I CCNGG 2 cut(s) 37, 183
MunI CAATTG 1 cut(s) 255
Mva1269I GAATGC 2 cut(s) 749, 1004
MvaI CCWGG 2 cut(s) 37, 183
MwoI GCNNNNNNNGC 2 cut(s) 721, 1008
NcoI CCATGG 2 cut(s) 271, 294
NdeII GATC 2 cut(s) 529, 965
NlaIII CATG 7 cut(s) 275, 298, 496, 552, 677, 724, 892
NlaIV GGNNCC 3 cut(s) 216, 284, 837
NmuCI GTSAC 2 cut(s) 440, 844
NsbI TGCGCA 1 cut(s) 557
NspI RCATGY 1 cut(s) 892
PceI AGGCCT 1 cut(s) 1011
PciI ACATGT 1 cut(s) 888
PctI GAATGC 2 cut(s) 749, 1004
PfeI GAWTC 4 cut(s) 145, 205, 517, 937
PflMI CCANNNNNTGG 1 cut(s) 743
PleI GAGTC 1 cut(s) 875
PpsI GAGTC 1 cut(s) 875
PpuMI RGGWCCY 1 cut(s) 215
PscI ACATGT 1 cut(s) 888
Psp5II RGGWCCY 1 cut(s) 215
Psp6I CCWGG 2 cut(s) 35, 181
PspGI CCWGG 2 cut(s) 35, 181
PspN4I GGNNCC 3 cut(s) 216, 284, 837
PspPI GGNCC 3 cut(s) 215, 260, 797
PspPPI RGGWCCY 1 cut(s) 215
SaqAI TTAA 2 cut(s) 192, 876
Sau3AI GATC 2 cut(s) 529, 965
Sau96I GGNCC 3 cut(s) 215, 260, 797
SchI GAGTC 1 cut(s) 876
ScrFI CCNGG 2 cut(s) 37, 183
SfaNI GCATC 2 cut(s) 146, 543
SfcI CTRYAG 1 cut(s) 390
SinI GGWCC 2 cut(s) 215, 797
SseBI AGGCCT 1 cut(s) 1011
StuI AGGCCT 1 cut(s) 1011
StyD4I CCNGG 2 cut(s) 35, 181
StyI CCWWGG 3 cut(s) 271, 294, 602
TaiI ACGT 2 cut(s) 826, 883
TaqI TCGA 4 cut(s) 148, 337, 964, 993
TfiI GAWTC 4 cut(s) 145, 205, 517, 937
Tru1I TTAA 2 cut(s) 192, 876
Tru9I TTAA 2 cut(s) 192, 876
TseFI GTSAC 2 cut(s) 440, 844
Tsp45I GTSAC 2 cut(s) 440, 844
TspDTI ATGAA 6 cut(s) 72, 135, 237, 481, 537, 672
Van91I CCANNNNNTGG 1 cut(s) 743
VpaK11BI GGWCC 2 cut(s) 215, 797
XapI RAATTY 4 cut(s) 64, 96, 195, 701
XceI RCATGY 1 cut(s) 892
XcmI CCANNNNNNNNNTGG 1 cut(s) 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.