RLG00000022054

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000442
Physical Location & Seq
Reverse (-)
80339880 .. 80342067
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022054

Sequence Viewer

Length: 1020 bp
ATGATGGCCACCACACCCAAAAACCTCGAAGAACTGAAGCAATCAACAGATCTCAAGCTTAAGAAGGCTTGCCTGAGAGATGTGTTTGAAAGCGTTGTTTGTAGAATGTCCGACCTAGGCATCGACAGTGGATCGTTGGATCCCAAACTCATCGAAATTGTGGACGGGAGAGCCTATCTGCCTGAGGACGTGGTTGAAGCAGGAGGCGCACTGCCACTCTACCTTCCCGCGCTGAAGAACCTTGTGATCGATGTGCACGCCCAAGACCATGTGCTGATGAGTCCAAGGGAGCGGTTGCAGTACGATGATTTTAAGCTGTACTTGGATAGACTCATCACTGTGAGACATCTGGAACTGATATGTGTACATCCACATTTTCATACAGCAGCAGAAGAACTACAGTTTATACCGAGAGCACGCATGAGGTTGTTCGCAATTCCTGAAAATCCGAATTACATACCGAAACATCCAGAAGAAAATAGGAAGCGCCACTTCCCAAAAGTGATCGATGGTGGCCATCAAGTTAATCCATCTCAAGCATCAATAGATCCAGATTTAATGAGATGGGAGAAAGCTTATGATGTGATGGTGAGGGAGACAAGGCTAGTGAACATTAAGCAATCCATTTCGGGACTCTCCCGTGAGTTTCATCAAATTTACAAAGATGGAATGATGCGCACAACCAAAAGAACTATACGATACCATGATAAGGAGGCTGCTGATGAGGTGCATTTCTTCTGCAATACAATGAAGCACATTTGGAAAAAGTTTCCCAAAGATCCCCAGGGTTTAAAAACTTATGATAAAGCTAAACATATCCTTGAAGCTACACTTGCCGCATTGCATCACATGTCGCCAACAATTCCGATAGAAATGTTTCGATTTTTCTGGCGCTATGATGGATACGCTTCAGGAATTATTTCTCTCAATTTTTTCAAGGACAGCAGGATTTCTTTTGAGGGCGACCTTGTGTTTGGGGAGACTAGTGAAGACCTTGGCGAGACCAGAGAAGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

39.38

Weight (kDa)

6.36

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 677
AccBSI CCGCTC 1 cut(s) 292
AccII CGCG 1 cut(s) 230
AciI CCGC 3 cut(s) 228, 292, 837
AclWI GGATC 5 cut(s) 134, 139, 147, 542, 773
AcoI YGGCCR 2 cut(s) 6, 514
AcsI RAATTY 1 cut(s) 654
AcuI CTGAAG 3 cut(s) 56, 254, 894
AfaI GTAC 3 cut(s) 302, 320, 366
AfiI CCNNNNNNNGG 1 cut(s) 709
AflII CTTAAG 1 cut(s) 59
AflIII ACRYGT 1 cut(s) 849
AgsI TTSAA 4 cut(s) 89, 197, 824, 937
AhlI ACTAGT 1 cut(s) 983
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 783
AluBI AGCT 5 cut(s) 58, 316, 575, 809, 827
AluI AGCT 5 cut(s) 58, 316, 575, 809, 827
Alw21I GWGCWC 2 cut(s) 258, 418
Alw26I GTCTC 4 cut(s) 337, 590, 974, 995
Alw44I GTGCAC 1 cut(s) 254
AlwI GGATC 5 cut(s) 134, 139, 147, 542, 773
AoxI GGCC 2 cut(s) 6, 514
ApaLI GTGCAC 1 cut(s) 254
ApeKI GCWGC 2 cut(s) 386, 716
ApoI RAATTY 1 cut(s) 654
ArsI GACNNNNNNTTYG 2 cut(s) 956, 988
Asp700I GAANNNNTTC 2 cut(s) 876, 919
AspA2I CCTAGG 1 cut(s) 115
AspLEI GCGC 5 cut(s) 209, 232, 489, 678, 894
AsuHPI GGTGA 1 cut(s) 601
AvrII CCTAGG 1 cut(s) 115
AxyI CCTNAGG 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 258
BalI TGGCCA 2 cut(s) 8, 516
BamHI GGATCC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 996
Bbv12I GWGCWC 2 cut(s) 258, 418
BbvI GCAGC 2 cut(s) 398, 703
BccI CCATC 7 cut(s) 503, 525, 538, 558, 580, 659, 893
BciT130I CCWGG 1 cut(s) 785
BciVI GTATCC 1 cut(s) 896
BcoDI GTCTC 4 cut(s) 337, 590, 974, 995
BcuI ACTAGT 1 cut(s) 983
BfaI CTAG 3 cut(s) 116, 605, 984
BfmI CTRYAG 1 cut(s) 398
BfoI RGCGCY 2 cut(s) 490, 895
BfrI CTTAAG 1 cut(s) 59
BfuI GTATCC 1 cut(s) 896
BglII AGATCT 1 cut(s) 49
BisI GCNGC 3 cut(s) 387, 717, 837
BlnI CCTAGG 1 cut(s) 115
BlsI GCNGC 3 cut(s) 388, 718, 838
Bme1390I CCNGG 1 cut(s) 785
BmgBI CACGTC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 785
BmsI GCATC 4 cut(s) 129, 548, 663, 853
BpiI GAAGAC 1 cut(s) 996
BpuEI CTTGAG 2 cut(s) 38, 519
Bsa29I ATCGAT 2 cut(s) 249, 507
BsaI GGTCTC 1 cut(s) 995
BsaJI CCNNGG 5 cut(s) 115, 284, 783, 784, 994
Bsc4I CCNNNNNNNGG 1 cut(s) 709
Bse21I CCTNAGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 839
BseBI CCWGG 1 cut(s) 785
BseCI ATCGAT 2 cut(s) 249, 507
BseDI CCNNGG 5 cut(s) 115, 284, 783, 784, 994
BseGI GGATG 2 cut(s) 367, 466
BseLI CCNNNNNNNGG 1 cut(s) 709
BseMI GCAATG 1 cut(s) 839
BseMII CTCAG 2 cut(s) 65, 174
BseSI GKGCMC 1 cut(s) 258
BseXI GCAGC 2 cut(s) 398, 703
Bsh1236I CGCG 1 cut(s) 230
BshFI GGCC 2 cut(s) 8, 516
BshVI ATCGAT 2 cut(s) 249, 507
BsiHKAI GWGCWC 2 cut(s) 258, 418
BslFI GGGAC 1 cut(s) 645
BslI CCNNNNNNNGG 1 cut(s) 709
BsmAI GTCTC 4 cut(s) 337, 590, 974, 995
BsmFI GGGAC 1 cut(s) 645
BsnI GGCC 2 cut(s) 8, 516
Bso31I GGTCTC 1 cut(s) 995
Bsp1286I GDGCHC 2 cut(s) 258, 418
Bsp1407I TGTACA 1 cut(s) 364
Bsp143I GATC 7 cut(s) 49, 131, 139, 246, 504, 547, 778
BspACI CCGC 3 cut(s) 228, 292, 837
BspANI GGCC 2 cut(s) 8, 516
BspCNI CTCAG 2 cut(s) 66, 175
BspDI ATCGAT 2 cut(s) 249, 507
BspFNI CGCG 1 cut(s) 230
BspLI GGNNCC 1 cut(s) 141
BspPI GGATC 5 cut(s) 134, 139, 147, 542, 773
BspTI CTTAAG 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 995
BsrBI CCGCTC 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 839
BsrGI TGTACA 1 cut(s) 364
BssECI CCNNGG 5 cut(s) 115, 284, 783, 784, 994
BssMI GATC 7 cut(s) 49, 131, 139, 246, 504, 547, 778
BssT1I CCWWGG 3 cut(s) 115, 284, 994
Bst2UI CCWGG 1 cut(s) 785
Bst4CI ACNGT 3 cut(s) 128, 340, 402
BstAFI CTTAAG 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 364
BstC8I GCNNGC 3 cut(s) 70, 258, 418
BstDEI CTNAG 2 cut(s) 74, 183
BstF5I GGATG 2 cut(s) 367, 466
BstFNI CGCG 1 cut(s) 230
BstH2I RGCGCY 2 cut(s) 490, 895
BstHHI GCGC 5 cut(s) 209, 232, 489, 678, 894
BstKTI GATC 7 cut(s) 52, 134, 142, 249, 507, 550, 781
BstMAI GTCTC 4 cut(s) 337, 590, 974, 995
BstMBI GATC 7 cut(s) 49, 131, 139, 246, 504, 547, 778
BstMWI GCNNNNNNNGC 2 cut(s) 206, 833
BstNI CCWGG 1 cut(s) 785
BstNSI RCATGY 1 cut(s) 853
BstSCI CCNGG 1 cut(s) 783
BstSFI CTRYAG 1 cut(s) 398
BstSLI GKGCMC 1 cut(s) 258
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 398, 703
BstV2I GAAGAC 1 cut(s) 996
BstX2I RGATCY 4 cut(s) 49, 139, 547, 778
BstYI RGATCY 4 cut(s) 49, 139, 547, 778
Bsu15I ATCGAT 2 cut(s) 249, 507
Bsu36I CCTNAGG 1 cut(s) 183
BsuI GTATCC 1 cut(s) 896
BsuRI GGCC 2 cut(s) 8, 516
BsuTUI ATCGAT 2 cut(s) 249, 507
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 2 cut(s) 367, 466
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 3 cut(s) 133, 209, 336
Cac8I GCNNGC 3 cut(s) 70, 258, 418
CfoI GCGC 5 cut(s) 209, 232, 489, 678, 894
ClaI ATCGAT 2 cut(s) 249, 507
Csp6I GTAC 3 cut(s) 301, 319, 365
CviAII CATG 4 cut(s) 269, 421, 704, 850
CviQI GTAC 3 cut(s) 301, 319, 365
DdeI CTNAG 2 cut(s) 74, 183
DpnI GATC 7 cut(s) 51, 133, 141, 248, 506, 549, 780
DpnII GATC 7 cut(s) 49, 131, 139, 246, 504, 547, 778
DraI TTTAAA 1 cut(s) 792
EaeI YGGCCR 2 cut(s) 6, 514
Eco130I CCWWGG 3 cut(s) 115, 284, 994
Eco31I GGTCTC 1 cut(s) 995
Eco57I CTGAAG 3 cut(s) 56, 254, 894
Eco81I CCTNAGG 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 783
EcoT14I CCWWGG 3 cut(s) 115, 284, 994
ErhI CCWWGG 3 cut(s) 115, 284, 994
FaeI CATG 4 cut(s) 272, 424, 707, 853
FalI AAGNNNNNCTT 6 cut(s) 305, 337, 476, 508, 816, 848
FaqI GGGAC 1 cut(s) 645
FatI CATG 4 cut(s) 268, 420, 703, 849
FauI CCCGC 1 cut(s) 235
Fnu4HI GCNGC 3 cut(s) 387, 717, 837
FokI GGATG 2 cut(s) 354, 453
Fsp4HI GCNGC 3 cut(s) 387, 717, 837
FspAI RTGCGCAY 1 cut(s) 677
FspBI CTAG 3 cut(s) 116, 605, 984
FspI TGCGCA 1 cut(s) 677
GlaI GCGC 5 cut(s) 208, 231, 488, 677, 893
GluI GCNGC 3 cut(s) 387, 717, 837
HaeII RGCGCY 2 cut(s) 490, 895
HaeIII GGCC 2 cut(s) 8, 516
HhaI GCGC 5 cut(s) 209, 232, 489, 678, 894
Hin1II CATG 4 cut(s) 272, 424, 707, 853
Hin6I GCGC 5 cut(s) 207, 230, 487, 676, 892
HinP1I GCGC 5 cut(s) 207, 230, 487, 676, 892
HindIII AAGCTT 2 cut(s) 56, 573
HinfI GANTC 3 cut(s) 280, 330, 633
HphI GGTGA 1 cut(s) 601
Hpy166II GTNNAC 4 cut(s) 163, 256, 365, 610
Hpy188I TCNGA 3 cut(s) 112, 450, 867
Hpy188III TCNNGA 6 cut(s) 350, 440, 470, 551, 630, 912
Hpy8I GTNNAC 4 cut(s) 163, 256, 365, 610
HpyAV CCTTC 2 cut(s) 58, 233
HpyCH4III ACNGT 3 cut(s) 128, 340, 402
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 5 cut(s) 256, 298, 730, 741, 844
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 833
HpyF3I CTNAG 2 cut(s) 74, 183
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 4 cut(s) 272, 424, 707, 853
HspAI GCGC 5 cut(s) 207, 230, 487, 676, 892
Kzo9I GATC 7 cut(s) 49, 131, 139, 246, 504, 547, 778
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 2 cut(s) 398, 703
LweI GCATC 4 cut(s) 129, 548, 663, 853
MaeI CTAG 3 cut(s) 116, 605, 984
MaeII ACGT 1 cut(s) 189
MalI GATC 7 cut(s) 51, 133, 141, 248, 506, 549, 780
MbiI CCGCTC 1 cut(s) 292
MboI GATC 7 cut(s) 49, 131, 139, 246, 504, 547, 778
MboII GAAGA 6 cut(s) 41, 247, 404, 485, 727, 1001
MflI RGATCY 4 cut(s) 49, 139, 547, 778
MhlI GDGCHC 2 cut(s) 258, 418
MlsI TGGCCA 2 cut(s) 8, 516
MluCI AATT 7 cut(s) 156, 435, 451, 654, 861, 915, 928
MluNI TGGCCA 2 cut(s) 8, 516
MlyI GAGTC 3 cut(s) 289, 324, 627
MmeI TCCRAC 2 cut(s) 117, 135
MnlI CCTC 8 cut(s) 35, 178, 197, 417, 585, 706, 718, 952
Mox20I TGGCCA 2 cut(s) 8, 516
MroXI GAANNNNTTC 2 cut(s) 876, 919
MscI TGGCCA 2 cut(s) 8, 516
MseI TTAA 6 cut(s) 60, 312, 525, 557, 615, 791
MslI CAYNNNNRTG 1 cut(s) 338
Msp20I TGGCCA 2 cut(s) 8, 516
MspCI CTTAAG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 785
MvaI CCWGG 1 cut(s) 785
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 2 cut(s) 206, 833
NdeII GATC 7 cut(s) 49, 131, 139, 246, 504, 547, 778
NlaIII CATG 4 cut(s) 272, 424, 707, 853
NlaIV GGNNCC 1 cut(s) 141
NsbI TGCGCA 1 cut(s) 677
NspI RCATGY 1 cut(s) 853
PasI CCCWGGG 1 cut(s) 784
PciI ACATGT 1 cut(s) 849
PdmI GAANNNNTTC 2 cut(s) 876, 919
PkrI GCNGC 3 cut(s) 388, 718, 838
PleI GAGTC 3 cut(s) 288, 324, 627
PpsI GAGTC 3 cut(s) 288, 324, 627
PscI ACATGT 1 cut(s) 849
Psp6I CCWGG 1 cut(s) 783
PspGI CCWGG 1 cut(s) 783
PspN4I GGNNCC 1 cut(s) 141
PsuI RGATCY 4 cut(s) 49, 139, 547, 778
RsaI GTAC 3 cut(s) 302, 320, 366
RsaNI GTAC 3 cut(s) 301, 319, 365
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 6 cut(s) 60, 312, 525, 557, 615, 791
SatI GCNGC 3 cut(s) 387, 717, 837
Sau3AI GATC 7 cut(s) 49, 131, 139, 246, 504, 547, 778
SchI GAGTC 3 cut(s) 289, 324, 627
ScrFI CCNGG 1 cut(s) 785
SduI GDGCHC 2 cut(s) 258, 418
SfaNI GCATC 4 cut(s) 129, 548, 663, 853
SfcI CTRYAG 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 3 cut(s) 53, 59, 534
SmoI CTYRAG 3 cut(s) 53, 59, 534
SpeI ACTAGT 1 cut(s) 983
Sse9I AATT 7 cut(s) 156, 435, 451, 654, 861, 915, 928
SsiI CCGC 3 cut(s) 228, 292, 837
SspMI CTAG 3 cut(s) 116, 605, 984
StyD4I CCNGG 1 cut(s) 783
StyI CCWWGG 3 cut(s) 115, 284, 994
TaaI ACNGT 3 cut(s) 128, 340, 402
TaiI ACGT 1 cut(s) 192
TaqI TCGA 6 cut(s) 27, 123, 153, 249, 507, 880
TasI AATT 7 cut(s) 156, 435, 451, 654, 861, 915, 928
TatI WGTACW 2 cut(s) 318, 364
TauI GCSGC 1 cut(s) 839
Tru1I TTAA 6 cut(s) 60, 312, 525, 557, 615, 791
Tru9I TTAA 6 cut(s) 60, 312, 525, 557, 615, 791
TscAI CASTG 3 cut(s) 133, 216, 343
TseI GCWGC 2 cut(s) 386, 716
TspDTI ATGAA 3 cut(s) 368, 638, 764
TspRI CASTG 3 cut(s) 133, 216, 343
Vha464I CTTAAG 1 cut(s) 59
VneI GTGCAC 1 cut(s) 254
XapI RAATTY 1 cut(s) 654
XceI RCATGY 1 cut(s) 853
XmaJI CCTAGG 1 cut(s) 115
XmnI GAANNNNTTC 2 cut(s) 876, 919
XspI CTAG 3 cut(s) 116, 605, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.