Rh2DG660100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000442
Physical Location & Seq
Reverse (-)
88699696 .. 88701375
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG660100.1

Sequence Viewer

Length: 879 bp
ATGGATTTTATACAAAATCCAACACAGTATGCAACACAGGACTTGAGAAAGAATTTTGCAATGGATGTCATTGAAAACATCCGTTCAAAAAGAGAGATGGGCATTGTTGGTGGATCCCTAGCTTTAAATCACATTAAAGTGATCGGCTATAGAGCTAGACTTCCACAAGATGAGTACAACTCCTCGGTGCATAAGAATTATATTGAGGGCTACAAAGATTTCTTTGACGACTTATTTGGCGGCAGCAGTGAACCATTGGACGACGGGAATTATATAAACATCAAGTCATATGTGAAGGATCTGAAGACAATAGACCAAATGTTATTGCTGCTTCGCCACCCTTATTTTCAATCAGTGGATGAAGCTCTGAGATTCATTCCATCCGCCCTTAAATTACTTGATGGCTTAAGGGATAAAAAGTTTCCACGTCCAAGAACAGGGGCTAGTCAAGCAACCCCCGATCAAGCAACAATAGTGCGTGTCGAAAATCAACGTAGTTGGAAACATGTATACATGACTGTATGCTGCGAAGATAGAGTTAATATTTCAGAGTCAATTGGCAGAATTGAATCTGAAGATTACAGACGTGGATTTACGTCTCTGTATAATGCTGGAAAGAATGGCACACCGTATGAAGACACCGATGTGATAGATGAGCTGAAATTTTATGGAAACGCATGTAAACATCTAGTAAAACATATGAAGATACGTAGCGAAAGTGATTTATACCAAGCCTTGTGTCGGGCGTTTCCAGACGTGCCCAGAAAAGTGTTCAAGTTTTTCTGGACCTATGCAGGATATCACGACGGGCAAGTTAACTTGGAGTTTGTCAGACCTCTGATGAGCCTTTTCAAAAAGAAAGAGCGGATCTACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

33.99

Weight (kDa)

8.67

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 865
AccI GTMKAC 1 cut(s) 510
AciI CCGC 3 cut(s) 240, 384, 865
AclWI GGATC 4 cut(s) 108, 121, 306, 875
AcsI RAATTY 2 cut(s) 52, 662
AcuI CTGAAG 2 cut(s) 323, 594
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 2 cut(s) 437, 741
AflII CTTAAG 1 cut(s) 406
AflIII ACRYGT 1 cut(s) 505
AgsI TTSAA 6 cut(s) 74, 87, 350, 569, 775, 853
AjiI CACGTC 3 cut(s) 428, 587, 757
AleI CACNNNNGTG 1 cut(s) 644
AluBI AGCT 4 cut(s) 122, 155, 365, 658
AluI AGCT 4 cut(s) 122, 155, 365, 658
Alw26I GTCTC 1 cut(s) 603
AlwI GGATC 4 cut(s) 108, 121, 306, 875
ApeKI GCWGC 3 cut(s) 243, 328, 525
ApoI RAATTY 2 cut(s) 52, 662
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AspS9I GGNCC 1 cut(s) 786
AvaII GGWCC 1 cut(s) 786
BaeGI GKGCMC 1 cut(s) 762
BamHI GGATCC 1 cut(s) 113
BbsI GAAGAC 2 cut(s) 311, 642
BbvI GCAGC 3 cut(s) 255, 315, 512
BccI CCATC 3 cut(s) 91, 388, 395
BcoDI GTCTC 1 cut(s) 603
BfaI CTAG 4 cut(s) 119, 156, 444, 689
BfmI CTRYAG 1 cut(s) 148
BfrI CTTAAG 1 cut(s) 406
BisI GCNGC 4 cut(s) 241, 244, 329, 526
BlsI GCNGC 4 cut(s) 242, 245, 330, 527
Bme18I GGWCC 1 cut(s) 786
BmgBI CACGTC 3 cut(s) 428, 587, 757
BmgT120I GGNCC 1 cut(s) 786
BmiI GGNNCC 1 cut(s) 115
BpiI GAAGAC 2 cut(s) 311, 642
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpuEI CTTGAG 1 cut(s) 64
BsaAI YACGTR 1 cut(s) 710
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 2 cut(s) 437, 741
Bse3DI GCAATG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 4 cut(s) 70, 78, 364, 380
BseLI CCNNNNNNNGG 2 cut(s) 437, 741
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 359
BseRI GAGGAG 1 cut(s) 172
BseSI GKGCMC 1 cut(s) 762
BseXI GCAGC 3 cut(s) 255, 315, 512
BslI CCNNNNNNNGG 2 cut(s) 437, 741
BsmAI GTCTC 1 cut(s) 603
BsmBI CGTCTC 1 cut(s) 603
Bsp1286I GDGCHC 1 cut(s) 762
Bsp143I GATC 5 cut(s) 113, 141, 298, 460, 867
BspACI CCGC 3 cut(s) 240, 384, 865
BspCNI CTCAG 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 115
BspPI GGATC 4 cut(s) 108, 121, 306, 875
BspTI CTTAAG 1 cut(s) 406
BsrBI CCGCTC 1 cut(s) 865
BsrDI GCAATG 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 5 cut(s) 113, 141, 298, 460, 867
BssNAI GTATAC 1 cut(s) 511
Bst1107I GTATAC 1 cut(s) 511
Bst4CI ACNGT 3 cut(s) 27, 520, 630
BstAFI CTTAAG 1 cut(s) 406
BstBAI YACGTR 1 cut(s) 710
BstDEI CTNAG 1 cut(s) 368
BstF5I GGATG 4 cut(s) 70, 78, 364, 380
BstKTI GATC 5 cut(s) 116, 144, 301, 463, 870
BstMAI GTCTC 1 cut(s) 603
BstMBI GATC 5 cut(s) 113, 141, 298, 460, 867
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstNSI RCATGY 2 cut(s) 509, 681
BstSFI CTRYAG 1 cut(s) 148
BstSLI GKGCMC 1 cut(s) 762
BstSNI TACGTA 1 cut(s) 710
BstV1I GCAGC 3 cut(s) 255, 315, 512
BstV2I GAAGAC 2 cut(s) 311, 642
BstX2I RGATCY 3 cut(s) 113, 298, 867
BstYI RGATCY 3 cut(s) 113, 298, 867
BstZ17I GTATAC 1 cut(s) 511
BtrI CACGTC 3 cut(s) 428, 587, 757
BtsCI GGATG 4 cut(s) 70, 78, 364, 380
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 253, 360
Cfr13I GGNCC 1 cut(s) 786
Csp6I GTAC 1 cut(s) 175
CviAII CATG 3 cut(s) 506, 514, 678
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 368
DpnI GATC 5 cut(s) 115, 143, 300, 462, 869
DpnII GATC 5 cut(s) 113, 141, 298, 460, 867
DraI TTTAAA 1 cut(s) 126
EciI GGCGGA 1 cut(s) 373
Eco105I TACGTA 1 cut(s) 710
Eco32I GATATC 1 cut(s) 800
Eco47I GGWCC 1 cut(s) 786
Eco57I CTGAAG 2 cut(s) 323, 594
EcoRV GATATC 1 cut(s) 800
Esp3I CGTCTC 1 cut(s) 603
FaeI CATG 3 cut(s) 509, 517, 681
FatI CATG 3 cut(s) 505, 513, 677
FauNDI CATATG 2 cut(s) 289, 699
FblI GTMKAC 1 cut(s) 510
Fnu4HI GCNGC 4 cut(s) 241, 244, 329, 526
FokI GGATG 4 cut(s) 65, 77, 367, 371
Fsp4HI GCNGC 4 cut(s) 241, 244, 329, 526
FspBI CTAG 4 cut(s) 119, 156, 444, 689
GluI GCNGC 4 cut(s) 241, 244, 329, 526
Hin1II CATG 3 cut(s) 509, 517, 681
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HinfI GANTC 3 cut(s) 372, 551, 569
HpaI GTTAAC 1 cut(s) 817
Hpy166II GTNNAC 4 cut(s) 251, 511, 683, 817
Hpy188I TCNGA 6 cut(s) 303, 369, 550, 574, 833, 840
Hpy188III TCNNGA 3 cut(s) 752, 784, 803
Hpy8I GTNNAC 4 cut(s) 251, 511, 683, 817
Hpy99I CGWCG 2 cut(s) 266, 809
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 3 cut(s) 27, 520, 630
HpyCH4IV ACGT 6 cut(s) 427, 493, 586, 596, 709, 756
HpyCH4V TGCA 4 cut(s) 32, 59, 190, 794
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 1 cut(s) 368
HpySE526I ACGT 6 cut(s) 427, 493, 586, 596, 709, 756
Hsp92II CATG 3 cut(s) 509, 517, 681
KspAI GTTAAC 1 cut(s) 817
Kzo9I GATC 5 cut(s) 113, 141, 298, 460, 867
LpnPI CCDG 7 cut(s) 23, 423, 597, 765, 769, 775, 780
Lsp1109I GCAGC 3 cut(s) 255, 315, 512
MaeI CTAG 4 cut(s) 119, 156, 444, 689
MaeII ACGT 6 cut(s) 427, 493, 586, 596, 709, 756
MalI GATC 5 cut(s) 115, 143, 300, 462, 869
MbiI CCGCTC 1 cut(s) 865
MboI GATC 5 cut(s) 113, 141, 298, 460, 867
MboII GAAGA 5 cut(s) 316, 542, 587, 647, 715
MfeI CAATTG 1 cut(s) 555
MflI RGATCY 3 cut(s) 113, 298, 867
MhlI GDGCHC 1 cut(s) 762
MluCI AATT 7 cut(s) 52, 196, 268, 392, 555, 564, 662
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 2 cut(s) 44, 479
MnlI CCTC 3 cut(s) 193, 199, 846
MseI TTAA 6 cut(s) 125, 135, 390, 407, 540, 816
MslI CAYNNNNRTG 2 cut(s) 137, 644
MspCI CTTAAG 1 cut(s) 406
MunI CAATTG 1 cut(s) 555
MwoI GCNNNNNNNGC 1 cut(s) 449
NdeI CATATG 2 cut(s) 289, 699
NdeII GATC 5 cut(s) 113, 141, 298, 460, 867
NlaIII CATG 3 cut(s) 509, 517, 681
NlaIV GGNNCC 1 cut(s) 115
NspI RCATGY 2 cut(s) 509, 681
OliI CACNNNNGTG 1 cut(s) 644
PciI ACATGT 1 cut(s) 505
PfeI GAWTC 2 cut(s) 372, 569
PkrI GCNGC 4 cut(s) 242, 245, 330, 527
PleI GAGTC 1 cut(s) 559
PpsI GAGTC 1 cut(s) 559
Ppu21I YACGTR 1 cut(s) 710
PscI ACATGT 1 cut(s) 505
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 786
PsuI RGATCY 3 cut(s) 113, 298, 867
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 2 cut(s) 137, 644
SaqAI TTAA 6 cut(s) 125, 135, 390, 407, 540, 816
SatI GCNGC 4 cut(s) 241, 244, 329, 526
Sau3AI GATC 5 cut(s) 113, 141, 298, 460, 867
Sau96I GGNCC 1 cut(s) 786
SchI GAGTC 1 cut(s) 560
SduI GDGCHC 1 cut(s) 762
SfcI CTRYAG 1 cut(s) 148
SinI GGWCC 1 cut(s) 786
SmiMI CAYNNNNRTG 2 cut(s) 137, 644
SmlI CTYRAG 2 cut(s) 43, 406
SmoI CTYRAG 2 cut(s) 43, 406
SnaBI TACGTA 1 cut(s) 710
Sse9I AATT 7 cut(s) 52, 196, 268, 392, 555, 564, 662
SsiI CCGC 3 cut(s) 240, 384, 865
SspI AATATT 1 cut(s) 544
SspMI CTAG 4 cut(s) 119, 156, 444, 689
TaaI ACNGT 3 cut(s) 27, 520, 630
TaiI ACGT 6 cut(s) 430, 496, 589, 599, 712, 759
TaqI TCGA 1 cut(s) 483
TasI AATT 7 cut(s) 52, 196, 268, 392, 555, 564, 662
TatI WGTACW 1 cut(s) 174
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 2 cut(s) 372, 569
Tru1I TTAA 6 cut(s) 125, 135, 390, 407, 540, 816
Tru9I TTAA 6 cut(s) 125, 135, 390, 407, 540, 816
TscAI CASTG 2 cut(s) 253, 360
TseI GCWGC 3 cut(s) 243, 328, 525
TspDTI ATGAA 4 cut(s) 364, 375, 648, 716
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 2 cut(s) 253, 360
Vha464I CTTAAG 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 786
XapI RAATTY 2 cut(s) 52, 662
XceI RCATGY 2 cut(s) 509, 681
XmiI GTMKAC 1 cut(s) 510
XspI CTAG 4 cut(s) 119, 156, 444, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.