Rh2DG658100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000442
Physical Location & Seq
Reverse (-)
88473491 .. 88473739
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG658100.1

Sequence Viewer

Length: 249 bp
ATGAAATGGGAGACAGCTTACCATAAGACGGTGAAGGAGACAAGGAAAGTGAACATTCAGAAATCCATTTCAGAACTTGCCCCTGAGTTTCATGAAATATACAATGATGGAATATTGCGCAAAGGAAGTAGGCCTCAAAGATACCATGATAAGAATGCTGCTGATGAGTTGCACTACTTTTGCAATACCATGAAGCACATTCATGCAAAGTTTTCCCAGGTGAGTCCCTGTGTTTTGGCAAGATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.74

Weight (kDa)

9.36

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 28
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw26I GTCTC 2 cut(s) 5, 32
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 43, 232
BbvI GCAGC 1 cut(s) 145
BccI CCATC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 218
BcoDI GTCTC 2 cut(s) 5, 32
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 28
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 145
BshFI GGCC 1 cut(s) 133
BslFI GGGAC 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 2 cut(s) 5, 32
BsmFI GGGAC 1 cut(s) 210
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 1 cut(s) 133
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 76
BspHI TCATGA 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 84
BstHHI GCGC 1 cut(s) 120
BstMAI GTCTC 2 cut(s) 5, 32
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 133
CciI TCATGA 1 cut(s) 91
CfoI GCGC 1 cut(s) 120
CviAII CATG 4 cut(s) 92, 146, 190, 203
CviJI RGCY 2 cut(s) 17, 133
CviKI_1 RGCY 2 cut(s) 17, 133
DdeI CTNAG 1 cut(s) 84
Eco147I AGGCCT 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 216
FaeI CATG 4 cut(s) 95, 149, 193, 206
FaiI YATR 6 cut(s) 24, 93, 100, 147, 191, 204
FaqI GGGAC 1 cut(s) 210
FatI CATG 4 cut(s) 91, 145, 189, 202
Fnu4HI GCNGC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 159
FspI TGCGCA 1 cut(s) 119
GlaI GCGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 133
HhaI GCGC 1 cut(s) 120
Hin1II CATG 4 cut(s) 95, 149, 193, 206
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 1 cut(s) 223
HphI GGTGA 2 cut(s) 43, 232
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 60, 73
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 3 cut(s) 172, 183, 206
HpyF3I CTNAG 1 cut(s) 84
Hsp92II CATG 4 cut(s) 95, 149, 193, 206
HspAI GCGC 1 cut(s) 118
LpnPI CCDG 4 cut(s) 96, 203, 230, 241
Lsp1109I GCAGC 1 cut(s) 145
MlyI GAGTC 1 cut(s) 232
MnlI CCTC 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 218
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 1 cut(s) 218
NlaIII CATG 4 cut(s) 95, 149, 193, 206
NsbI TGCGCA 1 cut(s) 119
PagI TCATGA 1 cut(s) 91
PceI AGGCCT 1 cut(s) 133
PctI GAATGC 1 cut(s) 160
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
RseI CAYNNNNRTG 1 cut(s) 201
SatI GCNGC 1 cut(s) 159
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 218
SetI ASST 2 cut(s) 19, 222
SmiMI CAYNNNNRTG 1 cut(s) 201
SseBI AGGCCT 1 cut(s) 133
SspI AATATT 1 cut(s) 114
StuI AGGCCT 1 cut(s) 133
StyD4I CCNGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 31
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 5 cut(s) 17, 80, 108, 191, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.