Rh1BG273400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000442
Physical Location & Seq
Reverse (-)
40984895 .. 40985110
216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG273400.1

Sequence Viewer

Length: 216 bp
ATGGTCGATATTGGCGACGGTGTAAGTGATATGGGATGTGACCGGATTTGGTTTGGTGGCGACATAAAGGATCTTGCTTTTGGTGGCAGCGCTGGGGTCGCGACTTTGAGATGGGCGATGATGGTAGCTAGGGCTTGGGACGAGGAATGTTTCATCTTCCCTACAGATACGATGGTGGCTTGTCTTACTGGATGGCCGCTGGCAGAGTCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.66

Weight (kDa)

4.05

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 101
AciI CCGC 1 cut(s) 197
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 1 cut(s) 194
AfeI AGCGCT 1 cut(s) 91
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
AlwI GGATC 1 cut(s) 78
Aor51HI AGCGCT 1 cut(s) 91
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 87
AspLEI GCGC 1 cut(s) 92
BaeI ACNNNNGTAYC 2 cut(s) 159, 192
BbvI GCAGC 1 cut(s) 99
BccI CCATC 4 cut(s) 105, 115, 166, 186
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 162
BfoI RGCGCY 1 cut(s) 93
BisI GCNGC 2 cut(s) 88, 197
BlsI GCNGC 2 cut(s) 89, 198
BsaWI WCCGGW 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 193
BseGI GGATG 2 cut(s) 41, 197
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 99
BseYI CCCAGC 1 cut(s) 92
Bsh1236I CGCG 1 cut(s) 101
BshFI GGCC 1 cut(s) 196
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 1 cut(s) 196
Bsp143I GATC 1 cut(s) 70
Bsp68I TCGCGA 1 cut(s) 101
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 196
BspFNI CGCG 1 cut(s) 101
BspPI GGATC 1 cut(s) 78
BsrI ACTGG 1 cut(s) 193
BssMI GATC 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 201
BstF5I GGATG 2 cut(s) 41, 197
BstFNI CGCG 1 cut(s) 101
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstSFI CTRYAG 1 cut(s) 162
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 1 cut(s) 196
BtgZI GCGATG 1 cut(s) 131
BtsCI GGATG 2 cut(s) 41, 197
BtuMI TCGCGA 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 201
CfoI GCGC 1 cut(s) 92
CviJI RGCY 4 cut(s) 128, 134, 179, 196
CviKI_1 RGCY 4 cut(s) 128, 134, 179, 196
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 194
Eco47III AGCGCT 1 cut(s) 91
FaiI YATR 2 cut(s) 32, 65
FaqI GGGAC 1 cut(s) 152
Fnu4HI GCNGC 2 cut(s) 88, 197
FokI GGATG 2 cut(s) 48, 204
Fsp4HI GCNGC 2 cut(s) 88, 197
FspBI CTAG 1 cut(s) 129
GlaI GCGC 1 cut(s) 91
GluI GCNGC 2 cut(s) 88, 197
GsaI CCCAGC 1 cut(s) 96
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 1 cut(s) 196
HapII CCGG 1 cut(s) 43
HhaI GCGC 1 cut(s) 92
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 1 cut(s) 206
HpaII CCGG 1 cut(s) 43
Hpy188III TCNNGA 1 cut(s) 100
Hpy99I CGWCG 1 cut(s) 20
HpyCH4III ACNGT 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HspAI GCGC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 4 cut(s) 56, 78, 174, 185
Lsp1109I GCAGC 1 cut(s) 99
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 38
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 1 cut(s) 148
MflI RGATCY 1 cut(s) 70
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 1 cut(s) 136
MseI TTAA 1 cut(s) 214
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 1 cut(s) 43
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeII GATC 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 38
NruI TCGCGA 1 cut(s) 101
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PkrI GCNGC 2 cut(s) 89, 198
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PspFI CCCAGC 1 cut(s) 92
PsuI RGATCY 1 cut(s) 70
RruI TCGCGA 1 cut(s) 101
SaqAI TTAA 1 cut(s) 214
SatI GCNGC 2 cut(s) 88, 197
Sau3AI GATC 1 cut(s) 70
SchI GAGTC 1 cut(s) 215
SetI ASST 1 cut(s) 130
SfcI CTRYAG 1 cut(s) 162
SsiI CCGC 1 cut(s) 197
SspMI CTAG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 20
TaqI TCGA 1 cut(s) 6
TauI GCSGC 1 cut(s) 199
Tru1I TTAA 1 cut(s) 214
Tru9I TTAA 1 cut(s) 214
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 1 cut(s) 87
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 142
TspGWI ACGGA 1 cut(s) 199
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.