Rh2BG642000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000442
Physical Location & Seq
Forward (+)
86091612 .. 86092302
691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG642000.1

Sequence Viewer

Length: 348 bp
ATGTGTTTAACTGTGTTTGAAAACAAACAGATAACTACTGAGATAACTACGGCTAACTTGTTGCTCACGGTGTCTCCAACCATGCTGATTGAAATGTTCCGGTTTTTCTGGTGTTATGATGGCATCGCAGGAATTGATCTCTGCAATGTCATAGGAAGAAGAATTGAGGAGGGAGGCCCTGGACGAATTTTCCCAGGAGACTATCAATCAGTACCTGCAACAGTATTTCAGGTTGGAGGCATATACTGTTGGTATCCTCGGGAAGAATTGTCTGATGAAGAAGATGTGCAAAGGGGACTGAGGGATTTAAATGTTTACTTCCCCAGCCAGATGTTTGGATACACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.17

Weight (kDa)

4.37

Isoelectric Point (pI)

61.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 223
AcsI RAATTY 1 cut(s) 186
AfaI GTAC 1 cut(s) 213
AgsI TTSAA 2 cut(s) 20, 92
AjnI CCWGG 2 cut(s) 178, 193
Alw26I GTCTC 2 cut(s) 78, 192
AlwNI CAGNNNCTG 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 258
AoxI GGCC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 258
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 66
BciT130I CCWGG 2 cut(s) 180, 195
BciVI GTATCC 2 cut(s) 264, 332
BcoDI GTCTC 2 cut(s) 78, 192
BfuAI ACCTGC 1 cut(s) 223
BfuI GTATCC 2 cut(s) 264, 332
Bme1390I CCNGG 2 cut(s) 180, 195
BmeT110I CYCGRG 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 176
BmrFI CCNGG 2 cut(s) 180, 195
BmsI GCATC 1 cut(s) 132
BsaJI CCNNGG 3 cut(s) 178, 193, 257
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bse3DI GCAATG 1 cut(s) 151
BseBI CCWGG 2 cut(s) 180, 195
BseDI CCNNGG 3 cut(s) 178, 193, 257
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 2 cut(s) 30, 290
BseRI GAGGAG 1 cut(s) 182
BseYI CCCAGC 1 cut(s) 323
BshFI GGCC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 258
BsiSI CCGG 1 cut(s) 100
BslFI GGGAC 1 cut(s) 309
BsmAI GTCTC 2 cut(s) 78, 192
BsmFI GGGAC 1 cut(s) 309
BsnI GGCC 1 cut(s) 177
BsoBI CYCGRG 1 cut(s) 258
Bsp143I GATC 1 cut(s) 136
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 2 cut(s) 31, 291
BspMI ACCTGC 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 151
BssECI CCNNGG 3 cut(s) 178, 193, 257
BssMI GATC 1 cut(s) 136
Bst2UI CCWGG 2 cut(s) 180, 195
Bst4CI ACNGT 4 cut(s) 13, 70, 223, 248
BstDEI CTNAG 2 cut(s) 39, 299
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 2 cut(s) 78, 192
BstMBI GATC 1 cut(s) 136
BstNI CCWGG 2 cut(s) 180, 195
BstSCI CCNGG 2 cut(s) 178, 193
BstXI CCANNNNNNTGG 1 cut(s) 335
BsuI GTATCC 2 cut(s) 264, 332
BsuRI GGCC 1 cut(s) 177
BtgZI GCGATG 1 cut(s) 109
BveI ACCTGC 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 212
CviAII CATG 1 cut(s) 82
CviJI RGCY 3 cut(s) 53, 177, 327
CviKI_1 RGCY 3 cut(s) 53, 177, 327
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 2 cut(s) 39, 299
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
DraI TTTAAA 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 258
EcoO109I RGGNCCY 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 178, 193
FaeI CATG 1 cut(s) 85
FaiI YATR 6 cut(s) 83, 117, 152, 242, 244, 346
FaqI GGGAC 1 cut(s) 309
FatI CATG 1 cut(s) 81
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 1 cut(s) 177
HapII CCGG 1 cut(s) 100
Hin1II CATG 1 cut(s) 85
HpaII CCGG 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 1 cut(s) 316
HpyCH4III ACNGT 4 cut(s) 13, 70, 223, 248
HpyCH4V TGCA 3 cut(s) 144, 218, 289
HpyF3I CTNAG 2 cut(s) 39, 299
Hsp92II CATG 1 cut(s) 85
Kzo9I GATC 1 cut(s) 136
LweI GCATC 1 cut(s) 132
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 5 cut(s) 168, 171, 275, 290, 293
MluCI AATT 4 cut(s) 132, 162, 186, 266
MmeI TCCRAC 2 cut(s) 101, 214
MnlI CCTC 6 cut(s) 160, 163, 167, 230, 267, 294
MseI TTAA 2 cut(s) 8, 308
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 2 cut(s) 180, 195
MvaI CCWGG 2 cut(s) 180, 195
NdeII GATC 1 cut(s) 136
NlaIII CATG 1 cut(s) 85
Psp6I CCWGG 2 cut(s) 178, 193
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 2 cut(s) 178, 193
PspPI GGNCC 1 cut(s) 176
PstNI CAGNNNCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 8, 308
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 1 cut(s) 176
ScrFI CCNGG 2 cut(s) 180, 195
SetI ASST 2 cut(s) 217, 234
SfaNI GCATC 1 cut(s) 132
SmiI ATTTAAAT 1 cut(s) 309
Sse9I AATT 4 cut(s) 132, 162, 186, 266
StyD4I CCNGG 2 cut(s) 178, 193
SwaI ATTTAAAT 1 cut(s) 309
TaaI ACNGT 4 cut(s) 13, 70, 223, 248
TasI AATT 4 cut(s) 132, 162, 186, 266
Tru1I TTAA 2 cut(s) 8, 308
Tru9I TTAA 2 cut(s) 8, 308
TspDTI ATGAA 1 cut(s) 291
XapI RAATTY 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.