Rh7AG193900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000442
Physical Location & Seq
Forward (+)
17361897 .. 17381695
19799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG193900.1

Sequence Viewer

Length: 150 bp
ATGGCAGCAGAAGATACGATCACCAGTGAACCAGTCTCAGAAGCACATTCAATGAAAGGTGGAGATGGCGCCAACAGCTATGCCAAAAATTCCACTTTCCAGCCACAGTTACAACCATTTGAACATCACCACACCAACAGTACTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

49

Amino Acids

5.34

Weight (kDa)

5.64

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 68
AcsI RAATTY 1 cut(s) 88
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 1 cut(s) 142
AgsI TTSAA 2 cut(s) 51, 122
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 88
AspLEI GCGC 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 13, 119
BanI GGYRCC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 40
BfoI RGCGCY 1 cut(s) 72
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmcAI AGTACT 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 69
Bse1I ACTGG 2 cut(s) 24, 32
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 2 cut(s) 24, 32
BseXI GCAGC 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 40
Bsp143I GATC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 70
BspT107I GGYRCC 1 cut(s) 68
BsrI ACTGG 2 cut(s) 24, 32
BssMI GATC 1 cut(s) 18
BssNI GRCGYC 1 cut(s) 69
Bst4CI ACNGT 2 cut(s) 108, 140
BstACI GRCGYC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 37
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 31
CfoI GCGC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 141
CviJI RGCY 2 cut(s) 78, 103
CviKI_1 RGCY 2 cut(s) 78, 103
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 1 cut(s) 37
DinI GGCGCC 1 cut(s) 70
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
EgeI GGCGCC 1 cut(s) 70
EheI GGCGCC 1 cut(s) 70
FaiI YATR 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GlaI GCGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 72
HhaI GCGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 69
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HphI GGTGA 2 cut(s) 13, 119
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 1 cut(s) 40
Hpy8I GTNNAC 1 cut(s) 29
HpyCH4III ACNGT 2 cut(s) 108, 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 37
Hsp92I GRCGYC 1 cut(s) 69
HspAI GCGC 1 cut(s) 69
KasI GGCGCC 1 cut(s) 68
Kzo9I GATC 1 cut(s) 18
LpnPI CCDG 3 cut(s) 37, 45, 113
Lsp1109I GCAGC 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 108
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 1 cut(s) 23
MluCI AATT 1 cut(s) 88
Mly113I GGCGCC 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 75
NarI GGCGCC 1 cut(s) 69
NdeII GATC 1 cut(s) 18
NlaIV GGNNCC 1 cut(s) 70
PkrI GCNGC 1 cut(s) 7
PluTI GGCGCC 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 70
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 18
ScaI AGTACT 1 cut(s) 142
SetI ASST 2 cut(s) 61, 80
SfoI GGCGCC 1 cut(s) 70
SgeI CNNG 3 cut(s) 36, 44, 112
Sse9I AATT 1 cut(s) 88
SspDI GGCGCC 1 cut(s) 68
TaaI ACNGT 2 cut(s) 108, 140
TasI AATT 1 cut(s) 88
TatI WGTACW 1 cut(s) 140
TscAI CASTG 1 cut(s) 31
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 68
TspRI CASTG 1 cut(s) 31
XapI RAATTY 1 cut(s) 88
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.