Rh2DG659200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000442
Physical Location & Seq
Reverse (-)
88592890 .. 88594046
1157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG659200.1

Sequence Viewer

Length: 966 bp
ATGGCTTCTATGTTTCGTCTTTTTCGAAGATTGTTTACTTCTAAACCCAACTATCCTTCTACTTCTAGACCCATCTATCATTCTAGTCTGGTCAACCATACCTCCGACATTCACTTTACTCTAATGGATTTTATACAAAATCCAACACAATATGCAACACAGGACTTGAGAAAGAACTTTGCAATGGATGTCATTGAAGACATCTGTTCAAAAAAGGCGATGGGCATTGATGGTGGATCCTTAGCTTTAAATCACATTAAAGTGATTGGTTATAAAGCTGTACTTCCACAAGACGAATACAACCGCACGGTGCACAAGAATTATATTGAAGGCTACAAAGATTTCTTTGACAATTTATTTGGAGGATATAGTGAACCATTGGACGACGAGAATTATATAGACATCAAGTCATATGTGAAGGATCTAAAGACAACAGACCAAATGTTATTGCTGCTTCGCCACCCTTATTTTCAATCATTGGATGAAGCTCTGAGATTCATTCCATCCGCCCTTAAATTACTTAATGGCTTAAAGGGTGAAAAGTTTCCAGTTCCAGGAACTGAGGGTATACCCAATCTAGCAACAATATTGCCTAACAGATATTATTATGTCGATTGGAAACGTGCATACAAGCATCTATGCCGCACAAAGAGAGTTAATATTTCAGAGTCAATTGGCAGAATTGAATCTGAAGATAACAGACGTGGATTTACTTCTCTATATAATGCTGAAAATAATGGCACACCGTATAAAGATACCGATGAGATAGATGAGCTGAAATTTTATGCAAAGGCGTGTAAACATCTAGTAAGATATATGAAGATACGTAGCGAAAGTGATTTACGCCAAGCCTTGGGTAAGGCGTTTGGTCTCGTGCCCGGAAAAATGTTCAAGCTTTTCTGGATATATGCAGGATGTCACGACGGGAAAGTTAACTTGGATTTTGTCAGACCTCTGCGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

37.24

Weight (kDa)

9.07

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AccB7I CCANNNNNTGG 1 cut(s) 853
AccI GTMKAC 1 cut(s) 568
AciI CCGC 3 cut(s) 304, 507, 643
AclWI GGATC 3 cut(s) 231, 244, 429
AcsI RAATTY 1 cut(s) 779
AcuI CTGAAG 1 cut(s) 711
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 2 cut(s) 554, 853
AgsI TTSAA 6 cut(s) 197, 210, 329, 473, 686, 892
AhdI GACNNNNNGTC 1 cut(s) 406
AjiI CACGTC 1 cut(s) 704
AjnI CCWGG 1 cut(s) 553
AjuI GAANNNNNNNTTGG 2 cut(s) 920, 952
AluBI AGCT 5 cut(s) 245, 278, 488, 775, 895
AluI AGCT 5 cut(s) 245, 278, 488, 775, 895
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 1 cut(s) 875
Alw44I GTGCAC 1 cut(s) 311
AlwI GGATC 3 cut(s) 231, 244, 429
AlwNI CAGNNNCTG 1 cut(s) 560
ApaLI GTGCAC 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 451
ApoI RAATTY 1 cut(s) 779
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
Asp700I GAANNNNTTC 1 cut(s) 543
AsuC2I CCSGG 1 cut(s) 879
AsuHPI GGTGA 1 cut(s) 548
AsuII TTCGAA 1 cut(s) 25
BaeGI GKGCMC 2 cut(s) 315, 879
BamHI GGATCC 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 19, 51
BauI CACGAG 1 cut(s) 872
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 438
BccI CCATC 4 cut(s) 80, 214, 224, 511
BciT130I CCWGG 1 cut(s) 555
BcnI CCSGG 1 cut(s) 879
BcoDI GTCTC 1 cut(s) 875
BfaI CTAG 4 cut(s) 66, 84, 578, 806
BisI GCNGC 2 cut(s) 452, 643
BlsI GCNGC 2 cut(s) 453, 644
Bme1390I CCNGG 2 cut(s) 555, 879
BmeRI GACNNNNNGTC 1 cut(s) 406
BmgBI CACGTC 1 cut(s) 704
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 2 cut(s) 555, 879
BmsI GCATC 1 cut(s) 643
BpiI GAAGAC 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 241
Bpu14I TTCGAA 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 879
BsaAI YACGTR 1 cut(s) 827
BsaI GGTCTC 1 cut(s) 875
BsaJI CCNNGG 1 cut(s) 852
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 2 cut(s) 554, 853
Bse1I ACTGG 1 cut(s) 548
Bse3DI GCAATG 1 cut(s) 189
BseBI CCWGG 1 cut(s) 555
BseDI CCNNGG 1 cut(s) 852
BseGI GGATG 4 cut(s) 193, 487, 503, 920
BseLI CCNNNNNNNGG 2 cut(s) 554, 853
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 2 cut(s) 482, 552
BseNI ACTGG 1 cut(s) 548
BseSI GKGCMC 2 cut(s) 315, 879
BseXI GCAGC 1 cut(s) 438
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 1 cut(s) 879
BslI CCNNNNNNNGG 2 cut(s) 554, 853
BsmAI GTCTC 1 cut(s) 875
Bso31I GGTCTC 1 cut(s) 875
Bsp119I TTCGAA 1 cut(s) 25
Bsp1286I GDGCHC 2 cut(s) 315, 879
Bsp143I GATC 2 cut(s) 236, 421
BspACI CCGC 3 cut(s) 304, 507, 643
BspCNI CTCAG 2 cut(s) 483, 553
BspLI GGNNCC 1 cut(s) 238
BspPI GGATC 3 cut(s) 231, 244, 429
BspT104I TTCGAA 1 cut(s) 25
BspTNI GGTCTC 1 cut(s) 875
BsrDI GCAATG 1 cut(s) 189
BsrI ACTGG 1 cut(s) 548
BssECI CCNNGG 1 cut(s) 852
BssMI GATC 2 cut(s) 236, 421
BssNAI GTATAC 1 cut(s) 569
BssSI CACGAG 1 cut(s) 872
BssT1I CCWWGG 1 cut(s) 852
Bst1107I GTATAC 1 cut(s) 569
Bst2BI CACGAG 1 cut(s) 872
Bst2UI CCWGG 1 cut(s) 555
Bst4CI ACNGT 2 cut(s) 310, 747
BstBAI YACGTR 1 cut(s) 827
BstBI TTCGAA 1 cut(s) 25
BstDEI CTNAG 3 cut(s) 241, 491, 561
BstF5I GGATG 4 cut(s) 193, 487, 503, 920
BstKTI GATC 2 cut(s) 239, 424
BstMAI GTCTC 1 cut(s) 875
BstMBI GATC 2 cut(s) 236, 421
BstNI CCWGG 1 cut(s) 555
BstSCI CCNGG 2 cut(s) 553, 877
BstSLI GKGCMC 2 cut(s) 315, 879
BstSNI TACGTA 1 cut(s) 827
BstV1I GCAGC 1 cut(s) 438
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 2 cut(s) 236, 421
BstYI RGATCY 2 cut(s) 236, 421
BstZ17I GTATAC 1 cut(s) 569
BtgZI GCGATG 1 cut(s) 233
BtrI CACGTC 1 cut(s) 704
BtsCI GGATG 4 cut(s) 193, 487, 503, 920
CaiI CAGNNNCTG 1 cut(s) 560
Csp6I GTAC 1 cut(s) 281
CviJI RGCY 9 cut(s) 5, 245, 278, 333, 488, 528, 775, 851, 895
CviKI_1 RGCY 9 cut(s) 5, 245, 278, 333, 488, 528, 775, 851, 895
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 3 cut(s) 241, 491, 561
DpnI GATC 2 cut(s) 238, 423
DpnII GATC 2 cut(s) 236, 421
DraI TTTAAA 1 cut(s) 249
DriI GACNNNNNGTC 1 cut(s) 406
Eam1105I GACNNNNNGTC 1 cut(s) 406
EciI GGCGGA 1 cut(s) 496
Eco105I TACGTA 1 cut(s) 827
Eco130I CCWWGG 1 cut(s) 852
Eco31I GGTCTC 1 cut(s) 875
Eco57I CTGAAG 1 cut(s) 711
EcoRII CCWGG 1 cut(s) 553
EcoT14I CCWWGG 1 cut(s) 852
ErhI CCWWGG 1 cut(s) 852
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FauNDI CATATG 1 cut(s) 412
FblI GTMKAC 1 cut(s) 568
Fnu4HI GCNGC 2 cut(s) 452, 643
FokI GGATG 4 cut(s) 200, 490, 494, 927
Fsp4HI GCNGC 2 cut(s) 452, 643
FspBI CTAG 4 cut(s) 66, 84, 578, 806
GluI GCNGC 2 cut(s) 452, 643
HapII CCGG 1 cut(s) 879
HincII GTYRAC 2 cut(s) 94, 934
HindII GTYRAC 2 cut(s) 94, 934
HindIII AAGCTT 1 cut(s) 893
HinfI GANTC 3 cut(s) 495, 668, 686
HpaI GTTAAC 1 cut(s) 934
HpaII CCGG 1 cut(s) 879
HphI GGTGA 1 cut(s) 548
Hpy166II GTNNAC 7 cut(s) 36, 94, 313, 374, 569, 800, 934
Hpy188I TCNGA 5 cut(s) 106, 492, 667, 691, 950
Hpy188III TCNNGA 3 cut(s) 66, 901, 920
Hpy8I GTNNAC 7 cut(s) 36, 94, 313, 374, 569, 800, 934
Hpy99I CGWCG 2 cut(s) 389, 926
HpyAV CCTTC 3 cut(s) 66, 323, 412
HpyCH4III ACNGT 2 cut(s) 310, 747
HpyCH4IV ACGT 3 cut(s) 622, 703, 826
HpyCH4V TGCA 6 cut(s) 155, 182, 313, 626, 788, 911
HpyF3I CTNAG 3 cut(s) 241, 491, 561
HpySE526I ACGT 3 cut(s) 622, 703, 826
KspAI GTTAAC 1 cut(s) 934
Kzo9I GATC 2 cut(s) 236, 421
LpnPI CCDG 8 cut(s) 74, 146, 540, 561, 567, 886, 892, 897
Lsp1109I GCAGC 1 cut(s) 438
LweI GCATC 1 cut(s) 643
MaeI CTAG 4 cut(s) 66, 84, 578, 806
MaeII ACGT 3 cut(s) 622, 703, 826
MaeIII GTNAC 1 cut(s) 917
MalI GATC 2 cut(s) 238, 423
MboI GATC 2 cut(s) 236, 421
MboII GAAGA 4 cut(s) 39, 209, 704, 832
MfeI CAATTG 1 cut(s) 672
MflI RGATCY 2 cut(s) 236, 421
MhlI GDGCHC 2 cut(s) 315, 879
MluCI AATT 8 cut(s) 319, 352, 391, 515, 672, 681, 779, 961
MlyI GAGTC 1 cut(s) 677
MmeI TCCRAC 2 cut(s) 129, 167
MnlI CCTC 4 cut(s) 112, 356, 556, 963
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 8 cut(s) 248, 258, 513, 522, 530, 657, 933, 964
MslI CAYNNNNRTG 1 cut(s) 260
MspI CCGG 1 cut(s) 879
MspR9I CCNGG 2 cut(s) 555, 879
MunI CAATTG 1 cut(s) 672
MvaI CCWGG 1 cut(s) 555
NciI CCSGG 1 cut(s) 879
NdeI CATATG 1 cut(s) 412
NdeII GATC 2 cut(s) 236, 421
NlaIV GGNNCC 1 cut(s) 238
NmuCI GTSAC 1 cut(s) 917
NspV TTCGAA 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 2 cut(s) 495, 686
PflMI CCANNNNNTGG 1 cut(s) 853
PfoI TCCNGGA 1 cut(s) 553
PkrI GCNGC 2 cut(s) 453, 644
PleI GAGTC 1 cut(s) 676
PpsI GAGTC 1 cut(s) 676
Ppu21I YACGTR 1 cut(s) 827
PsiI TTATAA 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 553
PspGI CCWGG 1 cut(s) 553
PspN4I GGNNCC 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 560
PsuI RGATCY 2 cut(s) 236, 421
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
RseI CAYNNNNRTG 1 cut(s) 260
SaqAI TTAA 8 cut(s) 248, 258, 513, 522, 530, 657, 933, 964
SatI GCNGC 2 cut(s) 452, 643
Sau3AI GATC 2 cut(s) 236, 421
SchI GAGTC 1 cut(s) 677
ScrFI CCNGG 2 cut(s) 555, 879
SduI GDGCHC 2 cut(s) 315, 879
SfaNI GCATC 1 cut(s) 643
SfuI TTCGAA 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
SnaBI TACGTA 1 cut(s) 827
Sse9I AATT 8 cut(s) 319, 352, 391, 515, 672, 681, 779, 961
SsiI CCGC 3 cut(s) 304, 507, 643
SspI AATATT 2 cut(s) 588, 661
SspMI CTAG 4 cut(s) 66, 84, 578, 806
StyD4I CCNGG 2 cut(s) 553, 877
StyI CCWWGG 1 cut(s) 852
TaaI ACNGT 2 cut(s) 310, 747
TaiI ACGT 3 cut(s) 625, 706, 829
TaqI TCGA 2 cut(s) 25, 612
TasI AATT 8 cut(s) 319, 352, 391, 515, 672, 681, 779, 961
TatI WGTACW 1 cut(s) 280
TauI GCSGC 1 cut(s) 645
TfiI GAWTC 2 cut(s) 495, 686
Tru1I TTAA 8 cut(s) 248, 258, 513, 522, 530, 657, 933, 964
Tru9I TTAA 8 cut(s) 248, 258, 513, 522, 530, 657, 933, 964
TseFI GTSAC 1 cut(s) 917
TseI GCWGC 1 cut(s) 451
Tsp45I GTSAC 1 cut(s) 917
TspDTI ATGAA 3 cut(s) 487, 498, 833
Van91I CCANNNNNTGG 1 cut(s) 853
VneI GTGCAC 1 cut(s) 311
XapI RAATTY 1 cut(s) 779
XbaI TCTAGA 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 568
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 4 cut(s) 66, 84, 578, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.