Rroxscaffold_2G00080220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000442
Physical Location & Seq
Reverse (-)
3168259 .. 3169230
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00080220.1

Sequence Viewer

Length: 783 bp
ATGGATGTCATTGAAGACATCTGTTCAAAAAAGGCGATGGGCATTGATGGTGGATCCTTAGCTTTAAATCACATTAAAGTGATCGGTTATAGAGCTGTACTTCCACAAGACGATTACAACCGCACGGTGCACAAGAATTATATTGAAGGCTACAAAGATTTCTTTGACGATTTATTTGGAGGATATAGTGAACCATTGGACGACGAGAATTATATAGACATCAAGTCATATGTGAAGGATCTGAAGACAATAGACCAAATGTTATTGCTGCTTCGCCACCCTTATTTTCAATCATTGGATGAAGCTCTGAGATTCATTCCATCCGCCCTTAATTTACTTAATGGCTTAAAGGGTGAAAAGTTTCCAGTTCCAGGAACTGAGGGTATACCCAATCTAGCAACAATATTGCCTTACAGATATTATTATGTCGATTGGAAACGTGCATACAAGCATCTATGCCGCACAAAGAGAGTTAATATTTCAGAGTCAATTGGCAGAATTGAATCTGAAGATTACAGACGTGGATTTACTTCTCTATATAATGCTGAAAATAATGGCACACCGTATAAAGATACCGATGAGATAGATGAGCTGAAATTTTATGCAAAGGCGTGTAGACATCTAGTAAGATATATGAAGATACGTAGCGAAAGTGATTTACGCCAAGCCTTGGGTAAGGCGTTTGGTCTCGTGCCCGGAAAAATGTTCAAGCTTTTCTGGATATATGCAGGATGTCACGACGGGAAAGTTAACTTGGATTTTGTCAGACCTCTGCGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

30.16

Weight (kDa)

8.17

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 670
AccI GTMKAC 2 cut(s) 385, 616
AciI CCGC 3 cut(s) 121, 324, 460
AclWI GGATC 3 cut(s) 48, 61, 246
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 2 cut(s) 263, 528
AfaI GTAC 1 cut(s) 99
AfiI CCNNNNNNNGG 2 cut(s) 371, 670
AgsI TTSAA 6 cut(s) 14, 27, 146, 290, 503, 709
AhdI GACNNNNNGTC 1 cut(s) 223
AjiI CACGTC 1 cut(s) 521
AjnI CCWGG 1 cut(s) 370
AjuI GAANNNNNNNTTGG 2 cut(s) 737, 769
AluBI AGCT 5 cut(s) 62, 95, 305, 592, 712
AluI AGCT 5 cut(s) 62, 95, 305, 592, 712
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 692
Alw44I GTGCAC 1 cut(s) 128
AlwI GGATC 3 cut(s) 48, 61, 246
AlwNI CAGNNNCTG 1 cut(s) 377
ApaLI GTGCAC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 268
ApoI RAATTY 1 cut(s) 596
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
Asp700I GAANNNNTTC 1 cut(s) 360
AsuC2I CCSGG 1 cut(s) 696
AsuHPI GGTGA 1 cut(s) 365
BaeGI GKGCMC 2 cut(s) 132, 696
BamHI GGATCC 1 cut(s) 53
BauI CACGAG 1 cut(s) 689
BbsI GAAGAC 2 cut(s) 21, 251
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 255
BccI CCATC 3 cut(s) 31, 41, 328
BciT130I CCWGG 1 cut(s) 372
BcnI CCSGG 1 cut(s) 696
BcoDI GTCTC 1 cut(s) 692
BfaI CTAG 2 cut(s) 395, 623
BisI GCNGC 2 cut(s) 269, 460
BlsI GCNGC 2 cut(s) 270, 461
Bme1390I CCNGG 2 cut(s) 372, 696
BmeRI GACNNNNNGTC 1 cut(s) 223
BmgBI CACGTC 1 cut(s) 521
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 2 cut(s) 372, 696
BmsI GCATC 1 cut(s) 460
BpiI GAAGAC 2 cut(s) 21, 251
Bpu10I CCTNAGC 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 696
BsaAI YACGTR 1 cut(s) 644
BsaI GGTCTC 1 cut(s) 692
BsaJI CCNNGG 1 cut(s) 669
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 670
Bse1I ACTGG 1 cut(s) 365
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 669
BseGI GGATG 4 cut(s) 10, 304, 320, 737
BseLI CCNNNNNNNGG 2 cut(s) 371, 670
BseMII CTCAG 2 cut(s) 299, 369
BseNI ACTGG 1 cut(s) 365
BseSI GKGCMC 2 cut(s) 132, 696
BseXI GCAGC 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 1 cut(s) 696
BslI CCNNNNNNNGG 2 cut(s) 371, 670
BsmAI GTCTC 1 cut(s) 692
Bso31I GGTCTC 1 cut(s) 692
Bsp1286I GDGCHC 2 cut(s) 132, 696
Bsp143I GATC 3 cut(s) 53, 81, 238
BspACI CCGC 3 cut(s) 121, 324, 460
BspCNI CTCAG 2 cut(s) 300, 370
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 3 cut(s) 48, 61, 246
BspTNI GGTCTC 1 cut(s) 692
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 1 cut(s) 669
BssMI GATC 3 cut(s) 53, 81, 238
BssNAI GTATAC 1 cut(s) 386
BssSI CACGAG 1 cut(s) 689
BssT1I CCWWGG 1 cut(s) 669
Bst1107I GTATAC 1 cut(s) 386
Bst2BI CACGAG 1 cut(s) 689
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 127, 564
BstBAI YACGTR 1 cut(s) 644
BstDEI CTNAG 3 cut(s) 58, 308, 378
BstF5I GGATG 4 cut(s) 10, 304, 320, 737
BstKTI GATC 3 cut(s) 56, 84, 241
BstMAI GTCTC 1 cut(s) 692
BstMBI GATC 3 cut(s) 53, 81, 238
BstNI CCWGG 1 cut(s) 372
BstSCI CCNGG 2 cut(s) 370, 694
BstSLI GKGCMC 2 cut(s) 132, 696
BstSNI TACGTA 1 cut(s) 644
BstV1I GCAGC 1 cut(s) 255
BstV2I GAAGAC 2 cut(s) 21, 251
BstX2I RGATCY 2 cut(s) 53, 238
BstYI RGATCY 2 cut(s) 53, 238
BstZ17I GTATAC 1 cut(s) 386
BtgZI GCGATG 1 cut(s) 50
BtrI CACGTC 1 cut(s) 521
BtsCI GGATG 4 cut(s) 10, 304, 320, 737
CaiI CAGNNNCTG 1 cut(s) 377
Csp6I GTAC 1 cut(s) 98
CviJI RGCY 8 cut(s) 62, 95, 150, 305, 345, 592, 668, 712
CviKI_1 RGCY 8 cut(s) 62, 95, 150, 305, 345, 592, 668, 712
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 3 cut(s) 58, 308, 378
DpnI GATC 3 cut(s) 55, 83, 240
DpnII GATC 3 cut(s) 53, 81, 238
DraI TTTAAA 1 cut(s) 66
DriI GACNNNNNGTC 1 cut(s) 223
Eam1105I GACNNNNNGTC 1 cut(s) 223
EciI GGCGGA 1 cut(s) 313
Eco105I TACGTA 1 cut(s) 644
Eco130I CCWWGG 1 cut(s) 669
Eco31I GGTCTC 1 cut(s) 692
Eco57I CTGAAG 2 cut(s) 263, 528
EcoRII CCWGG 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 669
FauNDI CATATG 1 cut(s) 229
FblI GTMKAC 2 cut(s) 385, 616
Fnu4HI GCNGC 2 cut(s) 269, 460
FokI GGATG 4 cut(s) 17, 307, 311, 744
Fsp4HI GCNGC 2 cut(s) 269, 460
FspBI CTAG 2 cut(s) 395, 623
GluI GCNGC 2 cut(s) 269, 460
HapII CCGG 1 cut(s) 696
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HindIII AAGCTT 1 cut(s) 710
HinfI GANTC 3 cut(s) 312, 485, 503
HpaI GTTAAC 1 cut(s) 751
HpaII CCGG 1 cut(s) 696
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 5 cut(s) 130, 191, 386, 617, 751
Hpy188I TCNGA 5 cut(s) 243, 309, 484, 508, 767
Hpy188III TCNNGA 2 cut(s) 718, 737
Hpy8I GTNNAC 5 cut(s) 130, 191, 386, 617, 751
Hpy99I CGWCG 2 cut(s) 206, 743
HpyAV CCTTC 2 cut(s) 140, 229
HpyCH4III ACNGT 2 cut(s) 127, 564
HpyCH4IV ACGT 3 cut(s) 439, 520, 643
HpyCH4V TGCA 4 cut(s) 130, 443, 605, 728
HpyF3I CTNAG 3 cut(s) 58, 308, 378
HpySE526I ACGT 3 cut(s) 439, 520, 643
KspAI GTTAAC 1 cut(s) 751
Kzo9I GATC 3 cut(s) 53, 81, 238
LpnPI CCDG 6 cut(s) 357, 378, 384, 703, 709, 714
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 1 cut(s) 460
MaeI CTAG 2 cut(s) 395, 623
MaeII ACGT 3 cut(s) 439, 520, 643
MaeIII GTNAC 1 cut(s) 734
MalI GATC 3 cut(s) 55, 83, 240
MboI GATC 3 cut(s) 53, 81, 238
MboII GAAGA 4 cut(s) 26, 256, 521, 649
MfeI CAATTG 1 cut(s) 489
MflI RGATCY 2 cut(s) 53, 238
MhlI GDGCHC 2 cut(s) 132, 696
MluCI AATT 7 cut(s) 136, 208, 331, 489, 498, 596, 778
MlyI GAGTC 1 cut(s) 494
MnlI CCTC 3 cut(s) 173, 373, 780
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 8 cut(s) 65, 75, 330, 339, 347, 474, 750, 781
MslI CAYNNNNRTG 1 cut(s) 77
MspI CCGG 1 cut(s) 696
MspR9I CCNGG 2 cut(s) 372, 696
MunI CAATTG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 372
NciI CCSGG 1 cut(s) 696
NdeI CATATG 1 cut(s) 229
NdeII GATC 3 cut(s) 53, 81, 238
NlaIV GGNNCC 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 734
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 2 cut(s) 312, 503
PflMI CCANNNNNTGG 1 cut(s) 670
PfoI TCCNGGA 1 cut(s) 370
PkrI GCNGC 2 cut(s) 270, 461
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
Ppu21I YACGTR 1 cut(s) 644
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 377
PsuI RGATCY 2 cut(s) 53, 238
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
RseI CAYNNNNRTG 1 cut(s) 77
SaqAI TTAA 8 cut(s) 65, 75, 330, 339, 347, 474, 750, 781
SatI GCNGC 2 cut(s) 269, 460
Sau3AI GATC 3 cut(s) 53, 81, 238
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 2 cut(s) 372, 696
SduI GDGCHC 2 cut(s) 132, 696
SetI ASST 9 cut(s) 64, 97, 307, 442, 523, 594, 646, 714, 772
SfaNI GCATC 1 cut(s) 460
SmiMI CAYNNNNRTG 1 cut(s) 77
SnaBI TACGTA 1 cut(s) 644
Sse9I AATT 7 cut(s) 136, 208, 331, 489, 498, 596, 778
SsiI CCGC 3 cut(s) 121, 324, 460
SspI AATATT 2 cut(s) 405, 478
SspMI CTAG 2 cut(s) 395, 623
StyD4I CCNGG 2 cut(s) 370, 694
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 2 cut(s) 127, 564
TaiI ACGT 3 cut(s) 442, 523, 646
TaqI TCGA 1 cut(s) 429
TasI AATT 7 cut(s) 136, 208, 331, 489, 498, 596, 778
TatI WGTACW 1 cut(s) 97
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 2 cut(s) 312, 503
Tru1I TTAA 8 cut(s) 65, 75, 330, 339, 347, 474, 750, 781
Tru9I TTAA 8 cut(s) 65, 75, 330, 339, 347, 474, 750, 781
TseFI GTSAC 1 cut(s) 734
TseI GCWGC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 734
TspDTI ATGAA 3 cut(s) 304, 315, 650
Van91I CCANNNNNTGG 1 cut(s) 670
VneI GTGCAC 1 cut(s) 128
XapI RAATTY 1 cut(s) 596
XmiI GTMKAC 2 cut(s) 385, 616
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 2 cut(s) 395, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.