Rh2BG636800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000442
Physical Location & Seq
Forward (+)
85751182 .. 85755577
4396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG636800.1

Sequence Viewer

Length: 495 bp
ATGTGGTATGTGGCTTCTATAGACCCCAAACCCCTTCGGCGTTTTTTCATTTCTTCTAAACCCATTTCAAAAAGTCTCTCGAACTCTCCCCCGAAAAGCATCAGTCTCCAATCTTTCCAGACGAGAGCTCTCGACGGCGGCGGCCGACAGACTCTCCGTGCCCACTCTCTTCTGTCATTGCCGGCTAAGAAGGCATTTCTCCTTCAAATTATCCGGAATTCAGGAGGTCGATCCCCCATTGTTGCCAATTTGGGGCTATCTTTCTCAAAGCTGAATTTGGGGAAAAGAGTCAGTTCACTTCTTCACACCAAGCCCGATGCGAAGCAAACCCCATCTCTGCTCAATTTGAGCAAAAGGTTTGGGCTTCTTCACACTCAGTCGGCTCAGTGTGGACTCGGAGCTTCTTCTTTGACGTCTGTCCGATCACTCTCTGCCATACGCCGTCGTTTCGCACCTTCTTCTCTGCTTCGCTCTCTGATTATCTGCGTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.83

Weight (kDa)

12.0

Isoelectric Point (pI)

61.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 416
AccIII TCCGGA 1 cut(s) 213
AciI CCGC 2 cut(s) 138, 141
AclWI GGATC 1 cut(s) 225
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 2 cut(s) 217, 274
AcyI GRCGYC 1 cut(s) 413
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 2 cut(s) 69, 206
AluBI AGCT 3 cut(s) 128, 271, 401
AluI AGCT 3 cut(s) 128, 271, 401
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 2 cut(s) 80, 110
AlwI GGATC 1 cut(s) 225
Aor13HI TCCGGA 1 cut(s) 213
AoxI GGCC 1 cut(s) 142
ApoI RAATTY 2 cut(s) 217, 274
BaeGI GKGCMC 1 cut(s) 163
BanII GRGCYC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 130
BccI CCATC 1 cut(s) 340
BceAI ACGGC 2 cut(s) 151, 426
BcoDI GTCTC 2 cut(s) 80, 110
BfmI CTRYAG 1 cut(s) 18
BisI GCNGC 2 cut(s) 139, 142
BlsI GCNGC 2 cut(s) 140, 143
BmsI GCATC 2 cut(s) 108, 307
BoxI GACNNNNGTC 1 cut(s) 416
BsaHI GRCGYC 1 cut(s) 413
BsaWI WCCGGW 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse118I RCCGGY 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 176
BseAI TCCGGA 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 2 cut(s) 389, 398
BseSI GKGCMC 1 cut(s) 163
BseX3I CGGCCG 1 cut(s) 142
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 1 cut(s) 144
BsiEI CGRYCG 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 2 cut(s) 182, 214
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 2 cut(s) 80, 110
BsnI GGCC 1 cut(s) 144
Bsp1286I GDGCHC 2 cut(s) 130, 163
Bsp13I TCCGGA 1 cut(s) 213
Bsp143I GATC 2 cut(s) 230, 422
BspACI CCGC 2 cut(s) 138, 141
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 2 cut(s) 388, 397
BspEI TCCGGA 1 cut(s) 213
BspPI GGATC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 181
BssMI GATC 2 cut(s) 230, 422
BssNI GRCGYC 1 cut(s) 413
Bst6I CTCTTC 1 cut(s) 174
BstACI GRCGYC 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 3 cut(s) 186, 375, 384
BstKTI GATC 2 cut(s) 233, 425
BstMAI GTCTC 2 cut(s) 80, 110
BstMBI GATC 2 cut(s) 230, 422
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstPAI GACNNNNGTC 1 cut(s) 416
BstSFI CTRYAG 1 cut(s) 18
BstSLI GKGCMC 1 cut(s) 163
BstZI CGGCCG 1 cut(s) 142
BsuRI GGCC 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 392
Cac8I GCNNGC 1 cut(s) 183
Cfr10I RCCGGY 1 cut(s) 181
DdeI CTNAG 3 cut(s) 186, 375, 384
DpnI GATC 2 cut(s) 232, 424
DpnII GATC 2 cut(s) 230, 422
EaeI YGGCCR 1 cut(s) 142
EagI CGGCCG 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Ecl136II GAGCTC 1 cut(s) 128
EclXI CGGCCG 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 130
Eco52I CGGCCG 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 128
EcoRI GAATTC 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 130
FaiI YATR 3 cut(s) 9, 20, 437
Fnu4HI GCNGC 2 cut(s) 139, 142
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 2 cut(s) 139, 142
GluI GCNGC 2 cut(s) 139, 142
HaeIII GGCC 1 cut(s) 144
HapII CCGG 2 cut(s) 182, 214
Hin1I GRCGYC 1 cut(s) 413
HinfI GANTC 3 cut(s) 151, 288, 393
HpaII CCGG 2 cut(s) 182, 214
Hpy166II GTNNAC 2 cut(s) 296, 392
Hpy188I TCNGA 3 cut(s) 398, 422, 477
Hpy188III TCNNGA 5 cut(s) 79, 118, 131, 214, 222
Hpy8I GTNNAC 2 cut(s) 296, 392
Hpy99I CGWCG 2 cut(s) 137, 447
HpyAV CCTTC 4 cut(s) 44, 184, 212, 465
HpyCH4IV ACGT 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 3 cut(s) 186, 375, 384
HpySE526I ACGT 1 cut(s) 413
Hsp92I GRCGYC 1 cut(s) 413
Kpn2I TCCGGA 1 cut(s) 213
KroI GCCGGC 1 cut(s) 181
KroNI GCCGGC 1 cut(s) 183
Kzo9I GATC 2 cut(s) 230, 422
LmnI GCTCC 1 cut(s) 398
LpnPI CCDG 4 cut(s) 131, 195, 207, 227
LweI GCATC 2 cut(s) 108, 307
MaeII ACGT 1 cut(s) 413
MalI GATC 2 cut(s) 232, 424
MboI GATC 2 cut(s) 230, 422
MboII GAAGA 6 cut(s) 45, 161, 293, 359, 396, 450
MhlI GDGCHC 2 cut(s) 130, 163
MluCI AATT 5 cut(s) 207, 217, 247, 274, 343
MlyI GAGTC 3 cut(s) 145, 297, 387
MnlI CCTC 1 cut(s) 218
MroI TCCGGA 1 cut(s) 213
MroNI GCCGGC 1 cut(s) 181
MspI CCGG 2 cut(s) 182, 214
MwoI GCNNNNNNNGC 1 cut(s) 191
NaeI GCCGGC 1 cut(s) 183
NdeII GATC 2 cut(s) 230, 422
NgoMIV GCCGGC 1 cut(s) 181
PdiI GCCGGC 1 cut(s) 183
PkrI GCNGC 2 cut(s) 140, 143
PleI GAGTC 3 cut(s) 145, 296, 387
PpsI GAGTC 3 cut(s) 145, 296, 387
PshAI GACNNNNGTC 1 cut(s) 416
Psp124BI GAGCTC 1 cut(s) 130
SacI GAGCTC 1 cut(s) 130
SatI GCNGC 2 cut(s) 139, 142
Sau3AI GATC 2 cut(s) 230, 422
SchI GAGTC 3 cut(s) 145, 297, 387
SduI GDGCHC 2 cut(s) 130, 163
SetI ASST 7 cut(s) 130, 229, 273, 359, 403, 416, 457
SfaNI GCATC 2 cut(s) 108, 307
SfcI CTRYAG 1 cut(s) 18
Sse9I AATT 5 cut(s) 207, 217, 247, 274, 343
SsiI CCGC 2 cut(s) 138, 141
SstI GAGCTC 1 cut(s) 130
TaiI ACGT 1 cut(s) 416
TaqI TCGA 3 cut(s) 80, 132, 229
TasI AATT 5 cut(s) 207, 217, 247, 274, 343
TauI GCSGC 2 cut(s) 141, 144
TscAI CASTG 1 cut(s) 392
TspDTI ATGAA 2 cut(s) 37, 479
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 1 cut(s) 392
XapI RAATTY 2 cut(s) 217, 274
ZraI GACGTC 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.