Rh2BG649800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000442
Physical Location & Seq
Reverse (-)
86820468 .. 86821452
985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG649800.1

Sequence Viewer

Length: 690 bp
ATGGTGCAAAAGAATTATATTGAGGGCTACAAAGATTTCTTTGACGATTTTTTTGGAACCAATAATGAACCATTGGTTGACGAGAATTATCTAGACATCAAGTCATATGTGGAGAATCTGAAGACAATAGACGAAATGTTATTGTTGCTTCGCCACCCTTATTTTCAATCAGTGAATGAAGCTCTGAGATTCATTCCATCCGCCCTTCAAGTACTTAATCGCTTGAGGGGTAAAACTTTTCCACTTCCAAGAACTGAGGCTAGTCAAGAAACCCCCGACCAAGCAACAATAGGGCCTGTCATGTACGATTGGCAAGATGTATACAAGGCTGTATGCTGCAAAGAGAAAGTAAACATTTCAGAGTCAATTTACAGCCTTGATTCTAAAGATTACAAACTTGGATTTACGTCTCTATATAATGCCAAAAAGAATGGCACACCGTATAAGGAAACCGATGAGATAGATGAGCTGATATTTTATGCAAACGCGTGTGAAGATCTACAACGTTATATGAATATACGTAGCGAAAGTGATTTATACAAAGCCTTGTGTCGGGTGTTTCCAGACGTGCCCAGCAAAGTGTTCAAGTTTTTCTGGACCTATGCAGGATATCACGACGGACAAGTTAACTTGGATTTTGTCAGACCTCTGATAGAATTGGCCGGTGGTGTGTGGGGAGTGCTGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

26.67

Weight (kDa)

4.92

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 321
AccII CGCG 1 cut(s) 488
AciI CCGC 1 cut(s) 201
AclI AACGTT 1 cut(s) 505
AcoI YGGCCR 1 cut(s) 660
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 2 cut(s) 213, 305
AfiI CCNNNNNNNGG 1 cut(s) 552
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 3 cut(s) 167, 209, 586
AhdI GACNNNNNGTC 1 cut(s) 100
AjiI CACGTC 1 cut(s) 568
AluBI AGCT 2 cut(s) 182, 469
AluI AGCT 2 cut(s) 182, 469
Alw26I GTCTC 1 cut(s) 414
AoxI GGCC 2 cut(s) 293, 660
ApeKI GCWGC 2 cut(s) 336, 682
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AspS9I GGNCC 2 cut(s) 293, 597
AvaII GGWCC 1 cut(s) 597
BaeGI GKGCMC 1 cut(s) 573
BbsI GAAGAC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 323, 669
BccI CCATC 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 414
BfaI CTAG 2 cut(s) 92, 261
BglII AGATCT 1 cut(s) 496
BisI GCNGC 2 cut(s) 337, 683
BlsI GCNGC 2 cut(s) 338, 684
BmcAI AGTACT 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 597
BmeRI GACNNNNNGTC 1 cut(s) 100
BmgBI CACGTC 1 cut(s) 568
BmgT120I GGNCC 2 cut(s) 293, 597
BmiI GGNNCC 1 cut(s) 58
BpiI GAAGAC 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 244
BsaAI YACGTR 1 cut(s) 521
Bsc4I CCNNNNNNNGG 1 cut(s) 552
Bse118I RCCGGY 1 cut(s) 662
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 1 cut(s) 552
BseMII CTCAG 2 cut(s) 176, 246
BseSI GKGCMC 1 cut(s) 573
BseXI GCAGC 2 cut(s) 323, 669
BseYI CCCAGC 1 cut(s) 572
BsgI GTGCAG 1 cut(s) 668
Bsh1236I CGCG 1 cut(s) 488
BshFI GGCC 2 cut(s) 295, 662
BsiSI CCGG 1 cut(s) 663
BslI CCNNNNNNNGG 1 cut(s) 552
BsmAI GTCTC 1 cut(s) 414
BsmBI CGTCTC 1 cut(s) 414
BsnI GGCC 2 cut(s) 295, 662
Bsp1286I GDGCHC 1 cut(s) 573
Bsp143I GATC 1 cut(s) 496
BspACI CCGC 1 cut(s) 201
BspANI GGCC 2 cut(s) 295, 662
BspCNI CTCAG 2 cut(s) 177, 247
BspFNI CGCG 1 cut(s) 488
BspLI GGNNCC 1 cut(s) 58
BsrFI RCCGGY 1 cut(s) 662
BssAI RCCGGY 1 cut(s) 662
BssMI GATC 1 cut(s) 496
BssNAI GTATAC 1 cut(s) 322
Bst1107I GTATAC 1 cut(s) 322
Bst4CI ACNGT 1 cut(s) 441
BstBAI YACGTR 1 cut(s) 521
BstDEI CTNAG 2 cut(s) 185, 255
BstF5I GGATG 1 cut(s) 197
BstFNI CGCG 1 cut(s) 488
BstKTI GATC 1 cut(s) 499
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 1 cut(s) 496
BstSLI GKGCMC 1 cut(s) 573
BstSNI TACGTA 1 cut(s) 521
BstUI CGCG 1 cut(s) 488
BstV1I GCAGC 2 cut(s) 323, 669
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BstZ17I GTATAC 1 cut(s) 322
BsuRI GGCC 2 cut(s) 295, 662
BtrI CACGTC 1 cut(s) 568
BtsCI GGATG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 177
Cfr10I RCCGGY 1 cut(s) 662
Cfr13I GGNCC 2 cut(s) 293, 597
Csp6I GTAC 2 cut(s) 212, 304
CviAII CATG 1 cut(s) 301
CviJI RGCY 9 cut(s) 27, 182, 260, 295, 329, 375, 469, 545, 662
CviKI_1 RGCY 9 cut(s) 27, 182, 260, 295, 329, 375, 469, 545, 662
CviQI GTAC 2 cut(s) 212, 304
DdeI CTNAG 2 cut(s) 185, 255
DpnI GATC 1 cut(s) 498
DpnII GATC 1 cut(s) 496
DriI GACNNNNNGTC 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 660
Eam1105I GACNNNNNGTC 1 cut(s) 100
EciI GGCGGA 1 cut(s) 190
Eco105I TACGTA 1 cut(s) 521
Eco32I GATATC 1 cut(s) 611
Eco47I GGWCC 1 cut(s) 597
Eco57I CTGAAG 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 293
EcoRV GATATC 1 cut(s) 611
Esp3I CGTCTC 1 cut(s) 414
FaeI CATG 1 cut(s) 304
FatI CATG 1 cut(s) 300
FauNDI CATATG 1 cut(s) 106
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 2 cut(s) 337, 683
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 2 cut(s) 337, 683
FspBI CTAG 2 cut(s) 92, 261
GluI GCNGC 2 cut(s) 337, 683
GsaI CCCAGC 1 cut(s) 576
HaeIII GGCC 2 cut(s) 295, 662
HapII CCGG 1 cut(s) 663
Hin1II CATG 1 cut(s) 304
HincII GTYRAC 2 cut(s) 79, 628
HindII GTYRAC 2 cut(s) 79, 628
HinfI GANTC 4 cut(s) 115, 189, 362, 380
HpaI GTTAAC 1 cut(s) 628
HpaII CCGG 1 cut(s) 663
Hpy166II GTNNAC 4 cut(s) 79, 322, 352, 628
Hpy188I TCNGA 5 cut(s) 120, 186, 361, 644, 651
Hpy188III TCNNGA 5 cut(s) 92, 266, 563, 595, 614
Hpy8I GTNNAC 4 cut(s) 79, 322, 352, 628
Hpy99I CGWCG 1 cut(s) 620
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 441
HpyCH4IV ACGT 4 cut(s) 407, 505, 520, 567
HpyCH4V TGCA 5 cut(s) 7, 339, 482, 605, 685
HpyF3I CTNAG 2 cut(s) 185, 255
HpySE526I ACGT 4 cut(s) 407, 505, 520, 567
Hsp92II CATG 1 cut(s) 304
KspAI GTTAAC 1 cut(s) 628
Kzo9I GATC 1 cut(s) 496
LpnPI CCDG 6 cut(s) 309, 576, 580, 586, 591, 676
Lsp1109I GCAGC 2 cut(s) 323, 669
MaeI CTAG 2 cut(s) 92, 261
MaeII ACGT 4 cut(s) 407, 505, 520, 567
MalI GATC 1 cut(s) 498
MboI GATC 1 cut(s) 496
MboII GAAGA 2 cut(s) 133, 506
MflI RGATCY 1 cut(s) 496
MhlI GDGCHC 1 cut(s) 573
MluCI AATT 4 cut(s) 13, 85, 366, 656
MluI ACGCGT 1 cut(s) 486
MlyI GAGTC 1 cut(s) 371
MnlI CCTC 4 cut(s) 16, 219, 250, 657
MseI TTAA 2 cut(s) 216, 627
MspI CCGG 1 cut(s) 663
MvnI CGCG 1 cut(s) 488
NdeI CATATG 1 cut(s) 106
NdeII GATC 1 cut(s) 496
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 1 cut(s) 58
PfeI GAWTC 3 cut(s) 115, 189, 380
PkrI GCNGC 2 cut(s) 338, 684
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
Ppu21I YACGTR 1 cut(s) 521
Psp1406I AACGTT 1 cut(s) 505
PspFI CCCAGC 1 cut(s) 572
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 2 cut(s) 293, 597
PsuI RGATCY 1 cut(s) 496
RsaI GTAC 2 cut(s) 213, 305
RsaNI GTAC 2 cut(s) 212, 304
SaqAI TTAA 2 cut(s) 216, 627
SatI GCNGC 2 cut(s) 337, 683
Sau3AI GATC 1 cut(s) 496
Sau96I GGNCC 2 cut(s) 293, 597
ScaI AGTACT 1 cut(s) 213
SchI GAGTC 1 cut(s) 371
SduI GDGCHC 1 cut(s) 573
SetI ASST 8 cut(s) 184, 410, 471, 508, 523, 570, 602, 649
SinI GGWCC 1 cut(s) 597
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
SnaBI TACGTA 1 cut(s) 521
Sse9I AATT 4 cut(s) 13, 85, 366, 656
SsiI CCGC 1 cut(s) 201
SspMI CTAG 2 cut(s) 92, 261
TaaI ACNGT 1 cut(s) 441
TaiI ACGT 4 cut(s) 410, 508, 523, 570
TasI AATT 4 cut(s) 13, 85, 366, 656
TatI WGTACW 1 cut(s) 211
TfiI GAWTC 3 cut(s) 115, 189, 380
Tru1I TTAA 2 cut(s) 216, 627
Tru9I TTAA 2 cut(s) 216, 627
TscAI CASTG 1 cut(s) 177
TseI GCWGC 2 cut(s) 336, 682
TspDTI ATGAA 4 cut(s) 81, 181, 192, 527
TspGWI ACGGA 1 cut(s) 633
TspRI CASTG 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 597
XbaI TCTAGA 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 321
XspI CTAG 2 cut(s) 92, 261
ZrmI AGTACT 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.